Wall clock time and date at job start Tue Mar 31 2020 01:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47506 * 103.05210 * 3 2 1 5 5 C 1.37095 * 120.00322 * 95.86308 * 4 3 2 6 6 H 1.07994 * 120.00413 * 162.55728 * 5 4 3 7 7 C 1.38956 * 119.99743 * 342.27863 * 5 4 3 8 8 N 1.31410 * 119.99866 * 337.17936 * 7 5 4 9 9 Si 1.86800 * 119.99713 * 157.18003 * 7 5 4 10 10 H 1.48494 * 109.47488 * 60.00274 * 9 7 5 11 11 H 1.48506 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47372 * 299.99851 * 9 7 5 13 13 C 1.34778 * 119.99888 * 275.86582 * 4 3 2 14 14 O 1.21292 * 119.99980 * 179.97438 * 13 4 3 15 15 C 1.50705 * 119.99829 * 359.97438 * 13 4 3 16 16 N 1.46905 * 109.46939 * 180.02562 * 15 13 4 17 17 C 1.47186 * 110.99710 * 188.93431 * 16 15 13 18 18 C 1.53002 * 108.71328 * 167.61854 * 17 16 15 19 19 N 1.46010 * 110.03865 * 50.30876 * 18 17 16 20 20 C 1.46500 * 118.53594 * 161.86364 * 19 18 17 21 21 C 1.33718 * 122.92670 * 341.83345 * 19 18 17 22 22 O 1.21282 * 118.62368 * 181.68743 * 21 19 18 23 23 C 1.46903 * 110.99981 * 66.04313 * 16 15 13 24 24 H 4.40643 * 5.51459 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46974 * 343.04542 * 3 2 1 26 26 H 1.09000 * 109.46910 * 223.05188 * 3 2 1 27 27 H 0.97006 * 119.99639 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46657 * 299.99583 * 15 13 4 29 29 H 1.09001 * 109.47255 * 60.00147 * 15 13 4 30 30 H 1.08995 * 109.59774 * 287.40657 * 17 16 15 31 31 H 1.09000 * 109.59631 * 47.86687 * 17 16 15 32 32 H 1.08998 * 109.37880 * 290.12991 * 18 17 16 33 33 H 1.09005 * 109.27851 * 170.42185 * 18 17 16 34 34 H 1.08997 * 109.47131 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47039 * 299.97381 * 20 19 18 36 36 H 1.08997 * 109.47451 * 59.97185 * 20 19 18 37 37 H 1.08997 * 109.38824 * 293.81918 * 23 16 15 38 38 H 1.09000 * 109.38460 * 53.61421 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3128 -1.3454 5 6 3.4765 1.6003 -1.6690 6 1 4.0891 1.7944 -2.5370 7 6 3.0305 2.6560 -0.8833 8 7 1.9608 2.5112 -0.1339 9 14 3.9516 4.2812 -0.8924 10 1 3.9605 4.8374 -2.2692 11 1 3.2785 5.2367 0.0237 12 1 5.3482 4.0612 -0.4384 13 6 3.2469 -0.6658 -2.2653 14 8 3.6507 -0.4073 -3.3794 15 6 2.8710 -2.0812 -1.9095 16 7 3.0826 -2.9514 -3.0740 17 6 2.5302 -4.2948 -2.8359 18 6 2.4955 -5.0538 -4.1639 19 7 3.7968 -4.9722 -4.8210 20 6 4.1093 -5.9381 -5.8772 21 6 4.7158 -4.0547 -4.5021 22 8 5.7594 -4.0385 -5.1198 23 6 4.5096 -3.0428 -3.4107 24 1 -1.0501 0.0002 0.0001 25 1 3.0097 -0.9822 0.2997 26 1 3.0089 0.7518 0.7016 27 1 1.6493 3.2484 0.4143 28 1 3.4918 -2.4248 -1.0821 29 1 1.8220 -2.1157 -1.6155 30 1 3.1613 -4.8289 -2.1256 31 1 1.5192 -4.2090 -2.4375 32 1 1.7355 -4.6160 -4.8110 33 1 2.2508 -6.0991 -3.9747 34 1 5.1100 -5.7435 -6.2630 35 1 4.0670 -6.9483 -5.4698 36 1 3.3834 -5.8413 -6.6845 37 1 4.8647 -2.0692 -3.7483 38 1 5.0711 -3.3463 -2.5271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:36 Heat of formation + Delta-G solvation = 3.206636 kcal Electronic energy + Delta-G solvation = -22146.800097 eV Core-core repulsion = 18798.468984 eV Total energy + Delta-G solvation = -3348.331113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61614 -40.44174 -38.21618 -37.03314 -36.09753 -34.00601 -32.97918 -31.13569 -30.49199 -28.38001 -27.61667 -26.23348 -25.37469 -23.56616 -20.81729 -19.71283 -19.60501 -18.54248 -18.15224 -17.72716 -17.56297 -17.10622 -16.46688 -16.18170 -16.04996 -15.55145 -15.36628 -15.05593 -14.50068 -14.27285 -14.13280 -13.93520 -13.54115 -13.41864 -13.34301 -13.13874 -12.85323 -12.76913 -12.62931 -12.35540 -12.28429 -12.13509 -11.10929 -11.04781 -11.00790 -10.59986 -10.27736 -9.78469 -9.74864 -9.38003 -8.29942 -5.88119 1.38797 1.43772 1.45458 1.52495 1.92091 2.00717 2.16840 2.36069 2.42125 2.64973 3.06612 3.27242 3.54317 3.82154 3.90726 4.00739 4.11809 4.23951 4.35614 4.36636 4.47711 4.57844 4.65181 4.72422 4.73198 4.75048 4.93927 4.99965 5.02028 5.38160 5.47501 5.50925 5.65228 5.92693 6.13979 6.31406 6.50512 7.02580 7.19315 7.21107 7.47166 8.05878 8.68277 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.004693 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.672607 B = 5964.877304 C = 6810.472307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.156 4.156 3 C 0.233 3.767 4 N -0.454 5.454 5 C -0.352 4.352 6 H 0.071 0.929 7 C 0.007 3.993 8 N -0.868 5.868 9 Si 0.977 3.023 10 H -0.283 1.283 11 H -0.273 1.273 12 H -0.268 1.268 13 C 0.440 3.560 14 O -0.613 6.613 15 C 0.061 3.939 16 N -0.531 5.531 17 C 0.030 3.970 18 C 0.118 3.882 19 N -0.605 5.605 20 C 0.070 3.930 21 C 0.521 3.479 22 O -0.599 6.599 23 C 0.043 3.957 24 H 0.232 0.768 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.271 0.729 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -16.713 2.023 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.158 4.158 3 C 0.111 3.889 4 N -0.173 5.173 5 C -0.479 4.479 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.505 5.505 9 Si 0.801 3.199 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.193 1.193 13 C 0.229 3.771 14 O -0.498 6.498 15 C -0.069 4.069 16 N -0.258 5.258 17 C -0.097 4.097 18 C -0.004 4.004 19 N -0.337 5.337 20 C -0.072 4.072 21 C 0.310 3.690 22 O -0.480 6.480 23 C -0.087 4.087 24 H 0.248 0.752 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.468 -16.255 0.916 16.646 hybrid contribution 0.612 1.209 0.488 1.440 sum -2.856 -15.046 1.404 15.379 Atomic orbital electron populations 1.25129 0.96321 1.04516 1.00011 1.23412 0.94929 0.97118 1.00302 1.18312 0.84688 1.00765 0.85142 1.43908 1.56401 1.07040 1.09953 1.19441 1.31511 0.82878 1.14082 0.91144 1.25847 0.95379 1.01691 0.96746 1.70172 1.18728 1.33984 1.27616 0.85257 0.78924 0.77825 0.77856 1.20898 1.19729 1.19344 1.20917 0.83249 0.88406 0.84495 1.90485 1.51891 1.84348 1.23107 1.21881 1.03692 0.89539 0.91826 1.62028 1.14014 1.12113 1.37598 1.22771 1.03083 0.86852 0.96998 1.21807 0.82852 1.02596 0.93139 1.47481 1.16667 1.31350 1.38249 1.21885 1.02530 0.92209 0.90552 1.20265 0.83135 0.81366 0.84251 1.90647 1.29110 1.74107 1.54150 1.22221 0.90565 0.99151 0.96782 0.75150 0.88078 0.89290 0.91874 0.90173 0.86798 0.92015 0.85924 0.90712 0.85881 0.91793 0.89032 0.90577 0.88961 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.84 19.25 74.32 1.43 -7.41 16 2 C -0.16 -6.36 10.85 31.13 0.34 -6.02 16 3 C 0.23 9.58 4.91 84.58 0.42 9.99 16 4 N -0.45 -22.40 2.60 -645.41 -1.68 -24.08 16 5 C -0.35 -19.62 9.31 84.04 0.78 -18.84 16 6 H 0.07 4.31 7.40 -2.91 -0.02 4.28 16 7 C 0.01 0.38 4.83 84.93 0.41 0.79 16 8 N -0.87 -44.37 9.58 21.66 0.21 -44.17 16 9 Si 0.98 42.06 29.61 68.60 2.03 44.09 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.44 20.78 7.32 87.66 0.64 21.43 16 14 O -0.61 -34.56 13.96 -3.07 -0.04 -34.61 16 15 C 0.06 2.01 4.04 85.56 0.35 2.36 16 16 N -0.53 -16.57 4.47 -905.44 -4.05 -20.62 16 17 C 0.03 0.57 5.60 86.25 0.48 1.05 16 18 C 0.12 1.99 6.64 86.47 0.57 2.57 16 19 N -0.61 -15.03 3.23 -850.17 -2.74 -17.77 16 20 C 0.07 1.35 10.55 127.77 1.35 2.70 16 21 C 0.52 17.89 7.57 87.68 0.66 18.56 16 22 O -0.60 -24.96 16.07 -3.04 -0.05 -25.01 16 23 C 0.04 1.52 5.14 85.42 0.44 1.96 16 24 H 0.23 6.48 7.80 -4.41 -0.03 6.44 16 25 H 0.10 3.19 6.69 -2.38 -0.02 3.18 16 26 H 0.09 3.96 6.50 -2.39 -0.02 3.94 16 27 H 0.27 13.20 8.31 -92.70 -0.77 12.43 16 28 H 0.08 2.17 7.33 -2.39 -0.02 2.16 16 29 H 0.11 3.41 7.30 -2.39 -0.02 3.39 16 30 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.12 1.74 7.91 -2.39 -0.02 1.72 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 1.05 8.13 -2.38 -0.02 1.03 16 34 H 0.06 1.59 6.67 -2.39 -0.02 1.58 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 4.17 6.01 -2.39 -0.01 4.16 16 38 H 0.08 2.40 8.05 -2.39 -0.02 2.38 16 Total: -1.00 -77.17 317.43 2.61 -74.56 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.06 Total: 18.47 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 7.87 Total: 29.13 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -8.26 Total: -106.63 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -0.09 Total: -59.62 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -77.17 2.61 -74.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.765 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds