Wall clock time and date at job start Tue Mar 31 2020 00:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47388 * 343.39321 * 3 2 1 5 5 C 1.36936 * 120.00104 * 264.25360 * 4 3 2 6 6 H 1.07996 * 120.00016 * 196.83340 * 5 4 3 7 7 C 1.38816 * 119.99855 * 16.83034 * 5 4 3 8 8 N 1.31621 * 119.99994 * 22.19376 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 202.19595 * 7 5 4 10 10 H 1.48498 * 109.47074 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47148 * 119.99793 * 9 7 5 12 12 H 1.48493 * 109.46873 * 240.00056 * 9 7 5 13 13 C 1.46501 * 119.99669 * 84.25466 * 4 3 2 14 14 C 1.50704 * 109.46924 * 269.99752 * 13 4 3 15 15 N 1.31134 * 126.55006 * 89.71384 * 14 13 4 16 16 C 1.34497 * 105.61370 * 179.91689 * 15 14 13 17 17 C 1.50697 * 126.28750 * 180.12891 * 16 15 14 18 18 H 1.09005 * 109.46772 * 345.28950 * 17 16 15 19 19 C 1.52999 * 109.47284 * 105.28856 * 17 16 15 20 20 O 1.42894 * 109.47127 * 225.28934 * 17 16 15 21 21 C 1.42900 * 114.00069 * 149.99917 * 20 17 16 22 22 C 1.53003 * 109.47236 * 179.97438 * 21 20 17 23 23 N 1.29944 * 107.42219 * 0.35152 * 16 15 14 24 24 O 1.21302 * 110.25638 * 359.77848 * 23 16 15 25 25 H 4.40641 * 5.51386 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.46921 * 223.39427 * 3 2 1 27 27 H 1.09007 * 109.47367 * 103.39526 * 3 2 1 28 28 H 0.97004 * 119.99697 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47098 * 29.99815 * 13 4 3 30 30 H 1.09000 * 109.46825 * 150.00620 * 13 4 3 31 31 H 1.08996 * 109.47246 * 180.02562 * 19 17 16 32 32 H 1.09007 * 109.46707 * 300.00172 * 19 17 16 33 33 H 1.08993 * 109.47023 * 59.99898 * 19 17 16 34 34 H 1.09003 * 109.47383 * 300.00166 * 21 20 17 35 35 H 1.08993 * 109.47366 * 59.99940 * 21 20 17 36 36 H 1.09001 * 109.47054 * 60.00378 * 22 21 20 37 37 H 1.08999 * 109.46831 * 180.02562 * 22 21 20 38 38 H 1.08995 * 109.47131 * 299.99757 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3227 0.3948 5 6 3.4753 -1.5660 1.6987 6 1 4.0801 -2.4254 1.9475 7 6 3.0429 -0.7080 2.7005 8 7 1.9889 0.0554 2.5037 9 14 3.9571 -0.6366 4.3280 10 1 5.0980 -1.5865 4.2970 11 1 4.4652 0.7409 4.5504 12 1 3.0343 -1.0078 5.4306 13 6 3.2599 -2.3858 -0.6055 14 6 1.9701 -3.1619 -0.6774 15 7 0.9454 -2.9035 -1.4539 16 6 0.0336 -3.8529 -1.1780 17 6 -1.3253 -3.9959 -1.8134 18 1 -1.5777 -3.0767 -2.3421 19 6 -1.3060 -5.1637 -2.8016 20 8 -2.3012 -4.2457 -0.7999 21 6 -3.6041 -3.7490 -1.1125 22 6 -4.5620 -4.0716 0.0362 23 7 0.5378 -4.6213 -0.2594 24 8 1.6497 -4.2415 0.0421 25 1 -1.0497 -0.0004 -0.0001 26 1 3.0090 0.7476 0.7060 27 1 3.0093 0.2389 -0.9998 28 1 1.6870 0.6553 3.2037 29 1 3.4736 -1.9451 -1.5793 30 1 4.0720 -3.0561 -0.3238 31 1 -2.2887 -5.2669 -3.2616 32 1 -0.5615 -4.9731 -3.5748 33 1 -1.0536 -6.0828 -2.2730 34 1 -3.5570 -2.6693 -1.2544 35 1 -3.9628 -4.2204 -2.0274 36 1 -4.2036 -3.6005 0.9514 37 1 -5.5559 -3.6932 -0.2025 38 1 -4.6091 -5.1513 0.1776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491698849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:14 Heat of formation + Delta-G solvation = 104.797211 kcal Electronic energy + Delta-G solvation = -22145.990706 eV Core-core repulsion = 18802.064891 eV Total energy + Delta-G solvation = -3343.925816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.68364 -38.42103 -36.45942 -35.04856 -32.97677 -31.76551 -31.59305 -30.55789 -29.88535 -27.02810 -26.04453 -24.68457 -22.99677 -22.73778 -21.83044 -20.21647 -17.58751 -17.31996 -16.89087 -16.68172 -16.42660 -15.64658 -15.16448 -15.06303 -14.15076 -13.80397 -13.69365 -13.42984 -13.19612 -12.73410 -12.67506 -12.15705 -12.06219 -11.74899 -11.64017 -11.52391 -11.41332 -11.06347 -10.90349 -10.85870 -10.73498 -10.36050 -10.24664 -10.14351 -9.67695 -9.28153 -8.97481 -8.84361 -8.48160 -7.34615 -5.98407 -3.42196 1.98871 2.85722 3.29437 3.38473 3.40765 3.53047 3.79238 4.14134 4.31826 4.38733 4.48631 4.80545 4.93383 5.01391 5.13926 5.20645 5.25407 5.29684 5.45320 5.45705 5.61843 5.69338 5.81164 5.85274 5.97027 6.02025 6.07185 6.12456 6.20014 6.49403 6.60560 6.81217 7.09757 7.18953 7.37078 7.61518 8.03421 8.87534 9.01037 9.21338 9.50814 9.93937 11.03334 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.005296 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.703982 B = 5285.944142 C = 5649.015460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.100 4.100 3 C 0.266 3.734 4 N -0.557 5.557 5 C -0.282 4.282 6 H 0.086 0.914 7 C 0.012 3.988 8 N -0.876 5.876 9 Si 0.909 3.091 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.290 1.290 13 C 0.221 3.779 14 C 0.183 3.817 15 N -0.488 5.488 16 C 0.155 3.845 17 C 0.188 3.812 18 H 0.086 0.914 19 C -0.165 4.165 20 O -0.372 6.372 21 C 0.057 3.943 22 C -0.150 4.150 23 N -0.380 5.380 24 O 0.072 5.928 25 H 0.184 0.816 26 H 0.101 0.899 27 H 0.045 0.955 28 H 0.258 0.742 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -4.872 -9.743 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.102 4.102 3 C 0.141 3.859 4 N -0.275 5.275 5 C -0.410 4.410 6 H 0.104 0.896 7 C -0.190 4.190 8 N -0.517 5.517 9 Si 0.738 3.262 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.217 1.217 13 C 0.089 3.911 14 C -0.041 4.041 15 N -0.224 5.224 16 C -0.119 4.119 17 C 0.128 3.872 18 H 0.104 0.896 19 C -0.223 4.223 20 O -0.291 6.291 21 C -0.020 4.020 22 C -0.208 4.208 23 N -0.090 5.090 24 O 0.015 5.985 25 H 0.201 0.799 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.667 -5.279 -9.392 12.174 hybrid contribution -0.363 0.266 1.025 1.119 sum -6.031 -5.013 -8.368 11.468 Atomic orbital electron populations 1.23990 0.95165 1.03531 1.07666 1.23892 0.95013 0.97230 0.94095 1.17992 0.83101 0.87671 0.97097 1.44800 1.71766 1.04875 1.06090 1.19438 1.26927 1.12409 0.82247 0.89611 1.25079 0.95905 0.99737 0.98257 1.70187 1.20814 1.26931 1.33727 0.86127 0.79439 0.77737 0.82902 1.19794 1.21205 1.21702 1.20162 0.86448 0.88919 0.95578 1.31637 1.01273 0.85842 0.85310 1.71777 1.01005 1.23306 1.26274 1.25209 0.98862 0.91265 0.96548 1.19802 0.81443 0.98820 0.87121 0.89574 1.22222 1.02532 0.98775 0.98785 1.88024 1.18207 1.79693 1.43131 1.22541 0.83218 0.98009 0.98195 1.21729 0.97668 1.02689 0.98674 1.74484 0.95346 1.23148 1.15997 1.85280 1.24289 1.37493 1.51475 0.79863 0.88082 0.93692 0.93132 0.89038 0.89262 0.91501 0.91106 0.91322 0.93101 0.93329 0.91657 0.91109 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.79 19.25 29.55 0.57 -6.22 16 2 C -0.10 -2.43 11.29 -37.12 -0.42 -2.85 16 3 C 0.27 6.01 5.45 -6.83 -0.04 5.98 16 4 N -0.56 -12.75 2.49 -177.94 -0.44 -13.20 16 5 C -0.28 -7.10 9.66 -15.06 -0.15 -7.24 16 6 H 0.09 2.09 7.90 -52.49 -0.41 1.68 16 7 C 0.01 0.31 4.85 -17.43 -0.08 0.22 16 8 N -0.88 -24.20 9.50 55.49 0.53 -23.67 16 9 Si 0.91 20.69 29.61 -169.99 -5.03 15.66 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.22 4.16 6.32 -5.19 -0.03 4.13 16 14 C 0.18 3.84 7.78 -13.06 -0.10 3.74 16 15 N -0.49 -10.29 11.55 -9.86 -0.11 -10.41 16 16 C 0.15 3.16 7.10 -156.37 -1.11 2.05 16 17 C 0.19 3.08 3.27 -27.88 -0.09 2.99 16 18 H 0.09 1.31 7.79 -51.93 -0.40 0.91 16 19 C -0.16 -2.13 9.51 37.16 0.35 -1.78 16 20 O -0.37 -6.36 9.97 -35.23 -0.35 -6.71 16 21 C 0.06 0.72 6.47 37.16 0.24 0.96 16 22 C -0.15 -1.69 10.28 37.16 0.38 -1.31 16 23 N -0.38 -8.41 12.16 30.90 0.38 -8.03 16 24 O 0.07 1.61 11.31 18.10 0.20 1.81 16 25 H 0.18 3.89 7.80 -54.10 -0.42 3.47 16 26 H 0.10 2.46 6.42 -51.93 -0.33 2.13 16 27 H 0.05 0.87 7.98 -51.93 -0.41 0.45 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.09 1.46 7.95 -51.93 -0.41 1.05 16 30 H 0.09 1.47 8.02 -51.93 -0.42 1.05 16 31 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -31.63 335.84 -5.55 -37.19 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.30 Total: 1.65 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.48 Total: 0.66 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.35 Total: -55.31 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.15 Total: -4.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.63 -5.55 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491698849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.986 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds