Wall clock time and date at job start Tue Mar 31 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47011 * 2 1 4 4 C 1.36599 * 120.00344 * 264.62916 * 3 2 1 5 5 H 1.07994 * 120.00403 * 141.69481 * 4 3 2 6 6 C 1.39198 * 119.99855 * 321.68776 * 4 3 2 7 7 N 1.31278 * 119.99907 * 339.27750 * 6 4 3 8 8 Si 1.86797 * 120.00070 * 159.27281 * 6 4 3 9 9 H 1.48505 * 109.46944 * 90.00367 * 8 6 4 10 10 H 1.48500 * 109.47402 * 210.00363 * 8 6 4 11 11 H 1.48504 * 109.47262 * 330.00477 * 8 6 4 12 12 C 1.34776 * 119.99688 * 84.62876 * 3 2 1 13 13 O 1.21784 * 119.99795 * 179.97438 * 12 3 2 14 14 C 1.46155 * 120.00190 * 359.97438 * 12 3 2 15 15 C 1.35338 * 119.99888 * 179.97438 * 14 12 3 16 16 C 1.46413 * 119.99888 * 179.97438 * 15 14 12 17 17 N 1.31701 * 126.39953 * 359.97438 * 16 15 14 18 18 N 1.28675 * 109.15099 * 179.74848 * 17 16 15 19 19 C 1.30765 * 109.51445 * 0.44302 * 18 17 16 20 20 C 1.50702 * 126.14278 * 179.82612 * 19 18 17 21 21 C 1.52999 * 109.46739 * 299.68892 * 20 19 18 22 22 C 1.52995 * 109.47228 * 59.68836 * 20 19 18 23 23 O 1.34182 * 107.71518 * 359.55949 * 19 18 17 24 24 H 1.09006 * 109.46911 * 299.99614 * 1 2 3 25 25 H 1.08995 * 109.46972 * 59.99491 * 1 2 3 26 26 H 1.08998 * 109.46809 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47108 * 240.00420 * 2 1 3 28 28 H 1.08995 * 109.47369 * 119.99843 * 2 1 3 29 29 H 0.96999 * 119.99998 * 179.97438 * 7 6 4 30 30 H 1.07992 * 120.00306 * 359.97438 * 14 12 3 31 31 H 1.07998 * 120.00253 * 0.02562 * 15 14 12 32 32 H 1.08995 * 109.47160 * 179.68995 * 20 19 18 33 33 H 1.09003 * 109.47202 * 299.99963 * 21 20 19 34 34 H 1.09002 * 109.46913 * 180.02562 * 21 20 19 35 35 H 1.08995 * 109.47210 * 60.00134 * 21 20 19 36 36 H 1.08995 * 109.47180 * 300.00147 * 22 20 19 37 37 H 1.09008 * 109.47135 * 59.99846 * 22 20 19 38 38 H 1.09002 * 109.46996 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3504 1.9884 -1.1777 5 1 2.1170 3.0314 -1.3323 6 6 2.9898 1.2626 -2.1788 7 7 3.6321 0.1574 -1.8799 8 14 2.9338 1.8612 -3.9473 9 1 4.0897 2.7578 -4.2032 10 1 2.9977 0.6966 -4.8664 11 1 1.6696 2.6053 -4.1783 12 6 2.1399 2.0530 1.1621 13 8 2.5463 3.2010 1.1622 14 6 1.7841 1.4036 2.4222 15 6 1.9067 2.0780 3.5892 16 6 1.5497 1.4277 4.8515 17 7 1.0986 0.1990 4.9974 18 7 0.8977 -0.0312 6.2473 19 6 1.2007 1.0344 6.9420 20 6 1.1017 1.1774 8.4390 21 6 -0.3490 0.9656 8.8766 22 6 1.9949 0.1329 9.1113 23 8 1.6211 1.9757 6.0832 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0774 -0.3486 -2.5775 30 1 1.4233 0.3857 2.4222 31 1 2.2670 3.0961 3.5893 32 1 1.4272 2.1758 8.7309 33 1 -0.9854 1.7097 8.3976 34 1 -0.4207 1.0695 9.9593 35 1 -0.6745 -0.0328 8.5847 36 1 1.6694 -0.8655 8.8194 37 1 3.0285 0.2838 8.7994 38 1 1.9229 0.2361 10.1940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492294381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:44 Heat of formation + Delta-G solvation = 16.041714 kcal Electronic energy + Delta-G solvation = -21132.073719 eV Core-core repulsion = 17784.299176 eV Total energy + Delta-G solvation = -3347.774543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.96390 -38.73268 -36.24286 -36.00787 -35.22115 -33.48411 -32.18270 -29.60911 -29.36349 -27.56609 -25.97652 -24.31838 -24.17578 -22.45211 -21.37035 -20.89222 -18.33352 -17.48909 -17.18934 -16.89583 -16.45077 -15.38500 -15.06515 -14.86659 -14.40835 -14.08334 -13.76827 -13.56477 -13.07032 -12.95383 -12.58558 -12.29817 -12.27302 -12.05571 -11.82929 -11.82001 -11.74441 -11.67737 -11.49724 -11.15654 -11.03991 -10.70734 -10.64318 -10.45365 -10.40841 -10.17519 -9.09799 -8.60709 -8.51783 -7.62437 -6.53447 -4.09359 0.64303 1.94818 2.25146 2.78884 3.11568 3.17969 3.23131 3.79299 4.02368 4.26504 4.32229 4.62854 4.62933 4.75381 4.79117 4.92804 5.19175 5.26511 5.37038 5.45027 5.46965 5.51253 5.54742 5.65926 5.84823 5.88040 5.93837 5.99085 6.14518 6.23060 6.42330 6.52201 6.62615 6.80027 7.12848 7.40114 8.09298 8.33997 8.38553 9.01673 9.19094 9.85143 10.49382 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.042137 B = 0.003250 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.339770 B = 8614.337766 C = 8825.165330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.410 5.410 4 C -0.305 4.305 5 H 0.097 0.903 6 C 0.040 3.960 7 N -0.852 5.852 8 Si 0.923 3.077 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.266 1.266 12 C 0.461 3.539 13 O -0.584 6.584 14 C -0.075 4.075 15 C -0.088 4.088 16 C 0.215 3.785 17 N -0.287 5.287 18 N -0.279 5.279 19 C 0.149 3.851 20 C 0.007 3.993 21 C -0.145 4.145 22 C -0.145 4.145 23 O -0.220 6.220 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.273 0.727 30 H 0.134 0.866 31 H 0.155 0.845 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 -1.686 15.942 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.126 5.126 4 C -0.433 4.433 5 H 0.115 0.885 6 C -0.167 4.167 7 N -0.488 5.488 8 Si 0.748 3.252 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.191 1.191 12 C 0.252 3.748 13 O -0.470 6.470 14 C -0.100 4.100 15 C -0.111 4.111 16 C 0.010 3.990 17 N -0.135 5.135 18 N -0.127 5.127 19 C -0.062 4.062 20 C -0.014 4.014 21 C -0.203 4.203 22 C -0.203 4.203 23 O -0.100 6.100 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.673 -2.514 15.513 16.708 hybrid contribution 0.474 1.209 -0.584 1.424 sum -5.199 -1.305 14.929 15.862 Atomic orbital electron populations 1.22230 0.97463 1.00863 1.01804 1.21684 0.92244 0.85061 1.04181 1.43477 1.52374 1.11778 1.04961 1.19530 1.36337 0.97642 0.89791 0.88540 1.25546 0.93807 0.96293 1.01083 1.69883 1.28156 1.16457 1.34326 0.85997 0.79341 0.78526 0.81309 1.19960 1.20551 1.19055 1.17984 0.85145 0.88270 0.83437 1.90675 1.51560 1.18218 1.86571 1.23721 0.92931 1.00210 0.93154 1.20609 1.05575 1.00719 0.84203 1.25877 0.98168 0.89678 0.85289 1.74963 1.16739 1.12395 1.09422 1.74406 1.18017 1.22673 0.97591 1.27989 0.98419 0.83568 0.96194 1.19687 0.98835 1.02427 0.80409 1.21870 0.93091 1.03516 1.01803 1.21871 0.99090 0.98858 1.00486 1.84831 1.65624 1.42493 1.17048 0.93572 0.92265 0.92648 0.87341 0.92588 0.91636 0.84798 0.82762 0.88232 0.92114 0.90702 0.91006 0.90997 0.92080 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.08 37.16 0.37 -2.59 16 2 C 0.09 1.97 5.28 -4.04 -0.02 1.94 16 3 N -0.41 -10.24 2.51 -116.50 -0.29 -10.53 16 4 C -0.30 -8.18 8.87 -15.07 -0.13 -8.31 16 5 H 0.10 2.69 7.78 -52.49 -0.41 2.28 16 6 C 0.04 1.01 4.91 -17.43 -0.09 0.92 16 7 N -0.85 -22.12 11.55 55.51 0.64 -21.48 16 8 Si 0.92 19.66 29.60 -169.99 -5.03 14.63 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 C 0.46 11.34 7.51 -13.08 -0.10 11.24 16 13 O -0.58 -16.21 16.11 5.11 0.08 -16.13 16 14 C -0.08 -1.51 8.37 -37.44 -0.31 -1.82 16 15 C -0.09 -1.62 9.75 -37.33 -0.36 -1.98 16 16 C 0.21 3.76 8.14 -14.32 -0.12 3.65 16 17 N -0.29 -5.23 11.83 31.84 0.38 -4.86 16 18 N -0.28 -4.57 12.24 32.60 0.40 -4.17 16 19 C 0.15 2.05 6.98 -12.73 -0.09 1.96 16 20 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 21 C -0.15 -1.07 9.17 37.16 0.34 -0.73 16 22 C -0.15 -1.09 9.18 37.16 0.34 -0.75 16 23 O -0.22 -3.46 10.89 4.08 0.04 -3.42 16 24 H 0.05 0.80 7.56 -51.93 -0.39 0.41 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.11 2.51 5.62 -51.93 -0.29 2.22 16 28 H 0.06 1.12 6.41 -51.93 -0.33 0.78 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.13 2.51 5.82 -52.49 -0.31 2.20 16 31 H 0.15 2.80 7.52 -52.49 -0.39 2.40 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -31.11 329.99 -4.35 -35.46 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.07 Total: 2.22 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.48 Total: 3.29 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 1.12 Total: -41.04 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.13 Total: -19.54 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.11 -4.35 -35.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492294381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.504 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds