Wall clock time and date at job start Tue Mar 31 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47011 * 2 1 4 4 C 1.36599 * 120.00344 * 264.62916 * 3 2 1 5 5 H 1.07994 * 120.00403 * 141.69481 * 4 3 2 6 6 C 1.39198 * 119.99855 * 321.68776 * 4 3 2 7 7 N 1.31278 * 119.99907 * 339.27750 * 6 4 3 8 8 Si 1.86797 * 120.00070 * 159.27281 * 6 4 3 9 9 H 1.48505 * 109.46944 * 90.00367 * 8 6 4 10 10 H 1.48500 * 109.47402 * 210.00363 * 8 6 4 11 11 H 1.48504 * 109.47262 * 330.00477 * 8 6 4 12 12 C 1.34776 * 119.99688 * 84.62876 * 3 2 1 13 13 O 1.21784 * 119.99795 * 179.97438 * 12 3 2 14 14 C 1.46155 * 120.00190 * 359.97438 * 12 3 2 15 15 C 1.35338 * 119.99888 * 179.97438 * 14 12 3 16 16 C 1.46413 * 119.99888 * 179.97438 * 15 14 12 17 17 N 1.31701 * 126.39953 * 359.97438 * 16 15 14 18 18 N 1.28675 * 109.15099 * 179.74848 * 17 16 15 19 19 C 1.30765 * 109.51445 * 0.44302 * 18 17 16 20 20 C 1.50702 * 126.14278 * 179.82612 * 19 18 17 21 21 C 1.52999 * 109.46739 * 299.68892 * 20 19 18 22 22 C 1.52995 * 109.47228 * 59.68836 * 20 19 18 23 23 O 1.34182 * 107.71518 * 359.55949 * 19 18 17 24 24 H 1.09006 * 109.46911 * 299.99614 * 1 2 3 25 25 H 1.08995 * 109.46972 * 59.99491 * 1 2 3 26 26 H 1.08998 * 109.46809 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47108 * 240.00420 * 2 1 3 28 28 H 1.08995 * 109.47369 * 119.99843 * 2 1 3 29 29 H 0.96999 * 119.99998 * 179.97438 * 7 6 4 30 30 H 1.07992 * 120.00306 * 359.97438 * 14 12 3 31 31 H 1.07998 * 120.00253 * 0.02562 * 15 14 12 32 32 H 1.08995 * 109.47160 * 179.68995 * 20 19 18 33 33 H 1.09003 * 109.47202 * 299.99963 * 21 20 19 34 34 H 1.09002 * 109.46913 * 180.02562 * 21 20 19 35 35 H 1.08995 * 109.47210 * 60.00134 * 21 20 19 36 36 H 1.08995 * 109.47180 * 300.00147 * 22 20 19 37 37 H 1.09008 * 109.47135 * 59.99846 * 22 20 19 38 38 H 1.09002 * 109.46996 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3504 1.9884 -1.1777 5 1 2.1170 3.0314 -1.3323 6 6 2.9898 1.2626 -2.1788 7 7 3.6321 0.1574 -1.8799 8 14 2.9338 1.8612 -3.9473 9 1 4.0897 2.7578 -4.2032 10 1 2.9977 0.6966 -4.8664 11 1 1.6696 2.6053 -4.1783 12 6 2.1399 2.0530 1.1621 13 8 2.5463 3.2010 1.1622 14 6 1.7841 1.4036 2.4222 15 6 1.9067 2.0780 3.5892 16 6 1.5497 1.4277 4.8515 17 7 1.0986 0.1990 4.9974 18 7 0.8977 -0.0312 6.2473 19 6 1.2007 1.0344 6.9420 20 6 1.1017 1.1774 8.4390 21 6 -0.3490 0.9656 8.8766 22 6 1.9949 0.1329 9.1113 23 8 1.6211 1.9757 6.0832 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0774 -0.3486 -2.5775 30 1 1.4233 0.3857 2.4222 31 1 2.2670 3.0961 3.5893 32 1 1.4272 2.1758 8.7309 33 1 -0.9854 1.7097 8.3976 34 1 -0.4207 1.0695 9.9593 35 1 -0.6745 -0.0328 8.5847 36 1 1.6694 -0.8655 8.8194 37 1 3.0285 0.2838 8.7994 38 1 1.9229 0.2361 10.1940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492294381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:44 Heat of formation + Delta-G solvation = -6.756922 kcal Electronic energy + Delta-G solvation = -21133.062342 eV Core-core repulsion = 17784.299176 eV Total energy + Delta-G solvation = -3348.763166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.25820 -40.60092 -37.34937 -37.20341 -36.92284 -35.02513 -34.04119 -31.28889 -30.73456 -28.14069 -27.72612 -25.78899 -25.40682 -24.08874 -22.87141 -21.91323 -20.03372 -19.05824 -18.59237 -18.47353 -17.89951 -17.08607 -16.41108 -16.21419 -15.84363 -15.61243 -15.18804 -14.81727 -14.59890 -14.22274 -13.66667 -13.63908 -13.63165 -13.48027 -13.13852 -13.08730 -12.88030 -12.84195 -12.70332 -12.45096 -12.36715 -12.32158 -12.09612 -11.87971 -11.79975 -11.79163 -10.97216 -10.58579 -9.99384 -9.53006 -8.44754 -6.12652 -0.77982 0.62033 1.01070 1.33241 1.42935 1.45340 1.56074 2.24266 2.41875 2.61726 3.00040 3.03317 3.23116 3.65955 3.89896 3.95755 3.97860 4.03098 4.12738 4.30650 4.42859 4.55409 4.56709 4.74670 4.76591 4.85005 4.87340 4.87374 5.01337 5.03194 5.08215 5.23258 5.28272 5.32134 5.39238 5.49697 6.13052 6.43119 7.06426 7.08277 7.30035 7.93456 8.58072 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.042137 B = 0.003250 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.339770 B = 8614.337766 C = 8825.165330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 N -0.423 5.423 4 C -0.345 4.345 5 H 0.072 0.928 6 C 0.008 3.992 7 N -0.877 5.877 8 Si 0.987 3.013 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.264 1.264 12 C 0.455 3.545 13 O -0.628 6.628 14 C -0.092 4.092 15 C -0.050 4.050 16 C 0.197 3.803 17 N -0.294 5.294 18 N -0.307 5.307 19 C 0.174 3.826 20 C 0.002 3.998 21 C -0.142 4.142 22 C -0.143 4.143 23 O -0.220 6.220 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.279 0.721 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -2.201 18.105 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.031 4.031 3 N -0.139 5.139 4 C -0.473 4.473 5 H 0.090 0.910 6 C -0.196 4.196 7 N -0.513 5.513 8 Si 0.810 3.190 9 H -0.202 1.202 10 H -0.189 1.189 11 H -0.188 1.188 12 C 0.247 3.753 13 O -0.517 6.517 14 C -0.117 4.117 15 C -0.073 4.073 16 C -0.009 4.009 17 N -0.143 5.143 18 N -0.154 5.154 19 C -0.036 4.036 20 C -0.017 4.017 21 C -0.200 4.200 22 C -0.200 4.200 23 O -0.099 6.099 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.436 -3.074 17.692 19.075 hybrid contribution 0.694 1.371 -0.901 1.782 sum -5.741 -1.703 16.790 17.826 Atomic orbital electron populations 1.22126 0.94760 1.02845 1.01520 1.21770 0.94436 0.83167 1.03695 1.43683 1.52632 1.12922 1.04628 1.19484 1.38881 0.97324 0.91630 0.90987 1.26290 0.92705 0.96270 1.04385 1.69939 1.28426 1.17273 1.35646 0.85048 0.79071 0.78355 0.76562 1.20190 1.18929 1.18775 1.18579 0.84164 0.87804 0.84780 1.90623 1.53457 1.20108 1.87527 1.23319 0.95986 1.00823 0.91550 1.20600 1.02047 1.00294 0.84328 1.25518 0.99929 0.89865 0.85627 1.74915 1.16035 1.12603 1.10734 1.74404 1.19998 1.23880 0.97076 1.29251 0.94521 0.82108 0.97740 1.20212 1.00359 1.04400 0.76775 1.21897 0.91582 1.02592 1.03900 1.21900 0.98150 0.97565 1.02415 1.84857 1.65609 1.42862 1.16619 0.93103 0.93251 0.89441 0.89175 0.91535 0.91061 0.83373 0.82634 0.85710 0.92627 0.87334 0.92229 0.92239 0.92744 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 10.08 71.98 0.73 -4.72 16 2 C 0.09 3.99 5.28 86.38 0.46 4.44 16 3 N -0.42 -21.85 2.51 -640.67 -1.61 -23.46 16 4 C -0.35 -19.28 8.87 84.18 0.75 -18.54 16 5 H 0.07 4.26 7.78 -2.91 -0.02 4.23 16 6 C 0.01 0.44 4.91 85.01 0.42 0.85 16 7 N -0.88 -46.27 11.55 21.70 0.25 -46.02 16 8 Si 0.99 40.91 29.60 68.60 2.03 42.94 16 9 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 11 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 12 C 0.45 23.14 7.51 86.30 0.65 23.79 16 13 O -0.63 -36.31 16.11 -4.62 -0.07 -36.39 16 14 C -0.09 -3.73 8.37 23.66 0.20 -3.53 16 15 C -0.05 -1.83 9.75 23.73 0.23 -1.60 16 16 C 0.20 6.70 8.14 86.84 0.71 7.40 16 17 N -0.29 -10.42 11.83 -166.69 -1.97 -12.39 16 18 N -0.31 -9.60 12.24 -165.21 -2.02 -11.63 16 19 C 0.17 4.42 6.98 88.27 0.62 5.03 16 20 C 0.00 0.03 3.39 -11.54 -0.04 0.00 16 21 C -0.14 -1.62 9.17 71.98 0.66 -0.96 16 22 C -0.14 -1.67 9.18 71.98 0.66 -1.01 16 23 O -0.22 -6.50 10.89 -8.33 -0.09 -6.59 16 24 H 0.05 1.73 7.56 -2.38 -0.02 1.71 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.09 4.24 5.62 -2.39 -0.01 4.23 16 28 H 0.07 2.67 6.41 -2.39 -0.02 2.65 16 29 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.15 5.52 5.82 -2.91 -0.02 5.50 16 31 H 0.16 5.65 7.52 -2.91 -0.02 5.62 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -69.83 329.99 3.61 -66.23 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.07 Total: 16.14 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.03 Total: 11.16 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -5.35 Total: -93.49 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.16 Total: -42.98 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -69.83 3.61 -66.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492294381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.469 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds