Wall clock time and date at job start Tue Mar 31 2020 00:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.47100 * 2 1 4 4 C 1.34954 * 116.99901 * 179.97438 * 3 2 1 5 5 C 1.34185 * 120.00140 * 179.97438 * 4 3 2 6 6 C 1.46588 * 119.99852 * 0.28574 * 5 4 3 7 7 O 1.22013 * 119.99733 * 359.71864 * 6 5 4 8 8 N 1.34156 * 120.00007 * 179.71897 * 6 5 4 9 9 C 1.32839 * 119.99914 * 179.97438 * 8 6 5 10 10 C 1.41234 * 126.38601 * 0.03389 * 9 8 6 11 11 C 1.34958 * 108.24577 * 179.97438 * 10 9 8 12 12 C 1.50693 * 125.52016 * 179.97438 * 11 10 9 13 13 N 1.36478 * 108.96145 * 359.97438 * 11 10 9 14 14 C 1.46501 * 125.84534 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47337 * 85.00146 * 14 13 11 16 16 H 1.08004 * 119.99728 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99943 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00134 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46932 * 59.99655 * 19 17 15 21 21 H 1.48493 * 109.47244 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47262 * 299.99963 * 19 17 15 23 23 N 1.37505 * 126.38218 * 179.71383 * 9 8 6 24 24 H 0.96998 * 126.37729 * 0.02562 * 23 9 8 25 25 H 1.08996 * 109.47065 * 300.00233 * 1 2 3 26 26 H 1.08996 * 109.46551 * 59.99959 * 1 2 3 27 27 H 1.08994 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47065 * 239.99767 * 2 1 3 29 29 H 1.09007 * 109.46906 * 119.99698 * 2 1 3 30 30 H 1.07999 * 119.99956 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.99849 * 180.02562 * 5 4 3 32 32 H 1.07996 * 125.87820 * 359.93458 * 10 9 8 33 33 H 1.08999 * 109.47091 * 90.02083 * 12 11 10 34 34 H 1.08999 * 109.47545 * 210.02192 * 12 11 10 35 35 H 1.09001 * 109.47064 * 330.02110 * 12 11 10 36 36 H 1.09002 * 109.46716 * 204.99713 * 14 13 11 37 37 H 1.08999 * 109.47050 * 324.99546 * 14 13 11 38 38 H 0.96999 * 120.00507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3443 1.5241 0.0005 5 6 3.8573 2.7640 0.0000 6 6 2.9643 3.9266 0.0053 7 8 1.7547 3.7667 0.0049 8 7 3.4771 5.1662 0.0105 9 6 2.6679 6.2197 0.0147 10 6 1.2559 6.1915 0.0150 11 6 0.8078 7.4646 0.0205 12 6 -0.6397 7.8833 0.0222 13 7 1.8782 8.3114 0.0243 14 6 1.8141 9.7750 0.0312 15 6 1.6687 10.2648 1.4490 16 1 1.6277 9.5566 2.2634 17 6 1.5871 11.6169 1.7062 18 7 1.6366 12.4791 0.7145 19 14 1.4061 12.2240 3.4635 20 1 2.5736 11.7761 4.2646 21 1 1.3414 13.7075 3.4705 22 1 0.1603 11.6709 4.0525 23 7 3.0490 7.5409 0.0257 24 1 3.9588 7.8772 0.0316 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.0022 0.6676 0.0005 31 1 4.9280 2.9055 0.0001 32 1 0.6405 5.3041 0.0108 33 1 -0.9888 7.9801 1.0502 34 1 -0.7416 8.8412 -0.4878 35 1 -1.2360 7.1313 -0.4947 36 1 2.7288 10.1806 -0.4013 37 1 0.9572 10.1039 -0.5566 38 1 1.5795 13.4304 0.8955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493093727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:43 Heat of formation + Delta-G solvation = 36.256345 kcal Electronic energy + Delta-G solvation = -21001.889920 eV Core-core repulsion = 17654.991950 eV Total energy + Delta-G solvation = -3346.897970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73902 -39.10372 -37.75216 -34.25163 -33.04803 -32.50863 -32.03703 -30.66991 -29.98698 -27.42722 -26.70504 -23.85642 -23.09904 -22.55963 -20.73304 -19.52961 -18.85259 -17.35186 -16.93159 -16.43855 -15.89693 -15.54539 -15.08777 -14.79595 -14.57455 -13.93729 -13.51751 -13.46517 -12.87241 -12.77382 -12.74233 -12.58896 -12.45264 -12.29897 -12.17041 -11.90759 -11.72504 -11.32733 -11.22797 -11.00278 -10.95344 -10.48675 -10.28143 -9.34960 -9.13739 -8.87722 -8.73310 -8.23204 -8.09402 -6.78178 -6.42481 -4.60877 1.59598 2.17564 2.31805 3.09910 3.15276 3.18752 3.34728 3.49166 4.09132 4.35919 4.70608 4.85324 4.85754 4.92754 5.00986 5.12508 5.15792 5.45960 5.56301 5.63060 5.77615 5.91948 5.94863 6.05433 6.17067 6.19750 6.34734 6.52182 6.59529 6.66854 6.79460 6.92179 7.43211 7.56188 7.59180 7.71661 7.84169 8.13491 8.46815 8.55597 9.09227 9.62367 10.56938 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.003297 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.433113 B = 8490.309774 C = 8734.582642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.283 6.283 4 C 0.080 3.920 5 C -0.237 4.237 6 C 0.522 3.478 7 O -0.567 6.567 8 N -0.700 5.700 9 C 0.471 3.529 10 C -0.335 4.335 11 C 0.186 3.814 12 C -0.092 4.092 13 N -0.345 5.345 14 C 0.255 3.745 15 C -0.555 4.555 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.888 5.888 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.473 5.473 24 H 0.443 0.557 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.182 0.818 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -15.479 -2.348 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.195 6.195 4 C 0.014 3.986 5 C -0.259 4.259 6 C 0.311 3.689 7 O -0.449 6.449 8 N -0.463 5.463 9 C 0.221 3.779 10 C -0.367 4.367 11 C 0.060 3.940 12 C -0.150 4.150 13 N -0.132 5.132 14 C 0.139 3.861 15 C -0.593 4.593 16 H 0.086 0.914 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.197 1.197 23 N -0.195 5.195 24 H 0.290 0.710 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.199 0.801 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.812 -14.849 -2.407 15.065 hybrid contribution 0.242 0.357 0.971 1.063 sum -0.570 -14.492 -1.436 14.574 Atomic orbital electron populations 1.21706 0.93033 1.01962 1.03984 1.22827 0.96536 0.82865 1.00396 1.86308 1.19777 1.26850 1.86527 1.22958 0.83717 0.97051 0.94887 1.22211 0.99938 0.90612 1.13114 1.18847 0.86543 0.87041 0.76483 1.90647 1.17079 1.88804 1.48406 1.68994 1.36339 0.97199 1.43792 1.19193 0.90180 0.83665 0.84906 1.22260 0.94475 0.97015 1.22920 1.21288 0.90102 0.89947 0.92621 1.20574 0.87591 1.02701 1.04160 1.47836 0.95208 1.05618 1.64496 1.19975 1.00276 0.66489 0.99361 1.21364 1.53772 0.92436 0.91727 0.91363 1.24940 0.93949 0.96145 0.98417 1.69887 1.48019 1.02941 1.31606 0.86364 0.79240 0.77656 0.83231 1.19873 1.20828 1.19671 1.44510 1.02107 1.01756 1.71170 0.70963 0.91419 0.91435 0.91082 0.92799 0.92793 0.85940 0.84403 0.80090 0.89277 0.90205 0.89664 0.93219 0.91600 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.51 6.74 37.16 0.25 0.76 16 3 O -0.28 -4.41 7.92 -39.41 -0.31 -4.72 16 4 C 0.08 1.12 10.41 29.30 0.31 1.42 16 5 C -0.24 -3.97 10.14 -37.64 -0.38 -4.35 16 6 C 0.52 11.19 7.66 -13.17 -0.10 11.09 16 7 O -0.57 -13.16 11.90 -17.92 -0.21 -13.37 16 8 N -0.70 -15.21 10.53 -12.50 -0.13 -15.34 16 9 C 0.47 10.05 8.07 -155.28 -1.25 8.80 16 10 C -0.33 -6.91 9.41 -39.61 -0.37 -7.28 16 11 C 0.19 3.53 6.92 -81.69 -0.57 2.97 16 12 C -0.09 -1.38 10.09 36.00 0.36 -1.01 16 13 N -0.34 -6.95 3.64 -58.03 -0.21 -7.16 16 14 C 0.26 5.58 5.93 -5.19 -0.03 5.55 16 15 C -0.55 -13.54 9.39 -34.44 -0.32 -13.87 16 16 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -22.86 13.29 55.43 0.74 -22.13 16 19 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 N -0.47 -9.25 7.38 31.34 0.23 -9.02 16 24 H 0.44 7.65 8.96 -182.55 -1.64 6.01 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.12 1.13 8.00 -52.49 -0.42 0.71 16 31 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.18 3.90 5.77 -52.49 -0.30 3.60 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.17 7.14 -51.93 -0.37 0.80 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.44 7.18 -51.93 -0.37 1.07 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.56 332.39 -8.19 -39.75 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.45 Total: 7.77 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.83 Total: 4.66 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.63 Total: -53.64 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.53 Total: -18.09 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.56 -8.19 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493093727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.003 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds