Wall clock time and date at job start Tue Mar 31 2020 00:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.47100 * 2 1 4 4 C 1.34954 * 116.99901 * 179.97438 * 3 2 1 5 5 C 1.34185 * 120.00140 * 179.97438 * 4 3 2 6 6 C 1.46588 * 119.99852 * 0.28574 * 5 4 3 7 7 O 1.22013 * 119.99733 * 359.71864 * 6 5 4 8 8 N 1.34156 * 120.00007 * 179.71897 * 6 5 4 9 9 C 1.32839 * 119.99914 * 179.97438 * 8 6 5 10 10 C 1.41234 * 126.38601 * 0.03389 * 9 8 6 11 11 C 1.34958 * 108.24577 * 179.97438 * 10 9 8 12 12 C 1.50693 * 125.52016 * 179.97438 * 11 10 9 13 13 N 1.36478 * 108.96145 * 359.97438 * 11 10 9 14 14 C 1.46501 * 125.84534 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47337 * 85.00146 * 14 13 11 16 16 H 1.08004 * 119.99728 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99943 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00134 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46932 * 59.99655 * 19 17 15 21 21 H 1.48493 * 109.47244 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47262 * 299.99963 * 19 17 15 23 23 N 1.37505 * 126.38218 * 179.71383 * 9 8 6 24 24 H 0.96998 * 126.37729 * 0.02562 * 23 9 8 25 25 H 1.08996 * 109.47065 * 300.00233 * 1 2 3 26 26 H 1.08996 * 109.46551 * 59.99959 * 1 2 3 27 27 H 1.08994 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47065 * 239.99767 * 2 1 3 29 29 H 1.09007 * 109.46906 * 119.99698 * 2 1 3 30 30 H 1.07999 * 119.99956 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.99849 * 180.02562 * 5 4 3 32 32 H 1.07996 * 125.87820 * 359.93458 * 10 9 8 33 33 H 1.08999 * 109.47091 * 90.02083 * 12 11 10 34 34 H 1.08999 * 109.47545 * 210.02192 * 12 11 10 35 35 H 1.09001 * 109.47064 * 330.02110 * 12 11 10 36 36 H 1.09002 * 109.46716 * 204.99713 * 14 13 11 37 37 H 1.08999 * 109.47050 * 324.99546 * 14 13 11 38 38 H 0.96999 * 120.00507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3443 1.5241 0.0005 5 6 3.8573 2.7640 0.0000 6 6 2.9643 3.9266 0.0053 7 8 1.7547 3.7667 0.0049 8 7 3.4771 5.1662 0.0105 9 6 2.6679 6.2197 0.0147 10 6 1.2559 6.1915 0.0150 11 6 0.8078 7.4646 0.0205 12 6 -0.6397 7.8833 0.0222 13 7 1.8782 8.3114 0.0243 14 6 1.8141 9.7750 0.0312 15 6 1.6687 10.2648 1.4490 16 1 1.6277 9.5566 2.2634 17 6 1.5871 11.6169 1.7062 18 7 1.6366 12.4791 0.7145 19 14 1.4061 12.2240 3.4635 20 1 2.5736 11.7761 4.2646 21 1 1.3414 13.7075 3.4705 22 1 0.1603 11.6709 4.0525 23 7 3.0490 7.5409 0.0257 24 1 3.9588 7.8772 0.0316 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.0022 0.6676 0.0005 31 1 4.9280 2.9055 0.0001 32 1 0.6405 5.3041 0.0108 33 1 -0.9888 7.9801 1.0502 34 1 -0.7416 8.8412 -0.4878 35 1 -1.2360 7.1313 -0.4947 36 1 2.7288 10.1806 -0.4013 37 1 0.9572 10.1039 -0.5566 38 1 1.5795 13.4304 0.8955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493093727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:42 Heat of formation + Delta-G solvation = 16.168790 kcal Electronic energy + Delta-G solvation = -21002.760982 eV Core-core repulsion = 17654.991950 eV Total energy + Delta-G solvation = -3347.769032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.32865 -40.32468 -39.18030 -35.98071 -34.74168 -33.70818 -33.40117 -32.28412 -31.12933 -28.81153 -28.45700 -25.44013 -24.21335 -23.87996 -22.19778 -21.03720 -20.20572 -18.94261 -18.57129 -17.90684 -17.05413 -16.80784 -16.71212 -16.42046 -16.02071 -15.43322 -15.05486 -14.70937 -14.40638 -14.24339 -14.09410 -13.82558 -13.69362 -13.59818 -13.39774 -13.19134 -13.05942 -12.92622 -12.71105 -12.29280 -12.16185 -12.05871 -11.77041 -11.05519 -10.77909 -10.68844 -10.29331 -9.72614 -9.41801 -8.53400 -8.19797 -6.55866 0.10895 0.60539 0.98398 1.39554 1.41767 1.49366 1.81776 2.30760 2.54697 2.79613 2.95239 3.33440 3.64847 3.71451 4.10027 4.15245 4.25850 4.30818 4.38705 4.45177 4.67341 4.79190 4.83690 4.87678 4.94325 4.98995 4.99972 5.09612 5.23019 5.29781 5.37051 5.49802 5.51679 5.70606 6.03755 6.20110 6.44700 6.64140 6.75051 6.96631 7.17676 8.03258 8.66955 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.003297 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.433113 B = 8490.309774 C = 8734.582642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 O -0.322 6.322 4 C 0.118 3.882 5 C -0.286 4.286 6 C 0.503 3.497 7 O -0.599 6.599 8 N -0.713 5.713 9 C 0.454 3.546 10 C -0.350 4.350 11 C 0.195 3.805 12 C -0.091 4.091 13 N -0.350 5.350 14 C 0.268 3.732 15 C -0.564 4.564 16 H 0.056 0.944 17 C 0.032 3.968 18 N -0.913 5.913 19 Si 0.963 3.037 20 H -0.277 1.277 21 H -0.278 1.278 22 H -0.266 1.266 23 N -0.470 5.470 24 H 0.451 0.549 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.180 0.820 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -17.029 -1.939 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 O -0.234 6.234 4 C 0.051 3.949 5 C -0.308 4.308 6 C 0.295 3.705 7 O -0.484 6.484 8 N -0.477 5.477 9 C 0.204 3.796 10 C -0.382 4.382 11 C 0.069 3.931 12 C -0.149 4.149 13 N -0.137 5.137 14 C 0.151 3.849 15 C -0.602 4.602 16 H 0.074 0.926 17 C -0.170 4.170 18 N -0.550 5.550 19 Si 0.788 3.212 20 H -0.202 1.202 21 H -0.203 1.203 22 H -0.191 1.191 23 N -0.194 5.194 24 H 0.299 0.701 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.197 0.803 31 H 0.173 0.827 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.020 -16.414 -2.003 16.567 hybrid contribution 0.258 0.682 0.822 1.099 sum -0.762 -15.732 -1.181 15.795 Atomic orbital electron populations 1.21765 0.93069 1.03603 1.02325 1.23196 0.96647 0.80801 1.02807 1.86272 1.21018 1.30481 1.85624 1.23615 0.83846 0.97770 0.89664 1.22238 1.00253 0.90121 1.18189 1.19706 0.87071 0.88047 0.75672 1.90610 1.18316 1.89228 1.50217 1.69105 1.36699 0.97664 1.44206 1.19464 0.90833 0.84098 0.85236 1.22157 0.94326 0.97361 1.24387 1.21851 0.91423 0.89150 0.90642 1.20761 0.85206 1.03779 1.05111 1.47773 0.95758 1.05344 1.64840 1.19695 0.99840 0.67196 0.98147 1.21506 1.53701 0.92491 0.92485 0.92556 1.25585 0.93641 0.96274 1.01518 1.69952 1.48741 1.03228 1.33105 0.85514 0.79039 0.77340 0.79319 1.20238 1.20261 1.19123 1.44495 1.02415 1.01289 1.71193 0.70082 0.93153 0.93028 0.87755 0.90214 0.90333 0.80287 0.82708 0.81113 0.88435 0.89683 0.86935 0.94109 0.91304 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.04 0.71 6.74 71.98 0.48 1.20 16 3 O -0.32 -9.56 7.92 -60.42 -0.48 -10.04 16 4 C 0.12 3.00 10.41 66.89 0.70 3.70 16 5 C -0.29 -9.44 10.14 23.52 0.24 -9.20 16 6 C 0.50 22.12 7.66 86.52 0.66 22.78 16 7 O -0.60 -28.66 11.90 16.47 0.20 -28.46 16 8 N -0.71 -31.90 10.53 -311.90 -3.28 -35.18 16 9 C 0.45 19.91 8.07 133.96 1.08 20.99 16 10 C -0.35 -14.79 9.41 22.25 0.21 -14.58 16 11 C 0.20 7.39 6.92 41.08 0.28 7.67 16 12 C -0.09 -2.60 10.09 71.23 0.72 -1.88 16 13 N -0.35 -14.19 3.64 -337.52 -1.23 -15.42 16 14 C 0.27 11.72 5.93 85.63 0.51 12.23 16 15 C -0.56 -27.38 9.39 25.60 0.24 -27.14 16 16 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 17 C 0.03 1.58 5.46 84.65 0.46 2.04 16 18 N -0.91 -46.57 13.29 21.45 0.28 -46.29 16 19 Si 0.96 39.50 29.54 68.60 2.03 41.52 16 20 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 23 N -0.47 -18.76 7.38 -54.77 -0.40 -19.16 16 24 H 0.45 15.94 8.96 -213.28 -1.91 14.03 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.18 2.41 8.00 -2.91 -0.02 2.39 16 31 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.17 7.63 5.77 -2.91 -0.02 7.61 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.08 2.37 7.14 -2.39 -0.02 2.36 16 35 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.99 7.18 -2.39 -0.02 2.97 16 38 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -69.46 332.39 2.60 -66.85 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.84 Total: 30.29 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.33 Total: 15.88 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -4.63 Total: -116.05 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.28 Total: -38.50 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.52 kcal Total: -69.46 2.60 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493093727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.024 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds