Wall clock time and date at job start Tue Mar 31 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47598 * 2 1 4 4 C 1.34744 * 117.00174 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00495 * 359.97438 * 4 3 2 6 6 C 1.47419 * 119.99670 * 180.02562 * 4 3 2 7 7 C 1.40190 * 120.87588 * 353.92112 * 6 4 3 8 8 N 1.31932 * 119.00461 * 179.72536 * 7 6 4 9 9 C 1.32691 * 120.90385 * 0.02562 * 8 7 6 10 10 N 1.37906 * 119.03602 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00037 * 359.97438 * 10 9 8 12 12 H 1.08993 * 109.46979 * 325.00235 * 11 10 9 13 13 C 1.53008 * 109.47183 * 84.99969 * 11 10 9 14 14 C 1.50700 * 109.47320 * 204.99713 * 11 10 9 15 15 H 1.07999 * 119.99774 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99983 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00135 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99834 * 180.02562 * 16 14 11 19 19 H 1.48509 * 109.47115 * 90.00131 * 18 16 14 20 20 H 1.48493 * 109.46981 * 209.99986 * 18 16 14 21 21 H 1.48503 * 109.47137 * 330.00137 * 18 16 14 22 22 N 1.32667 * 121.92804 * 0.02562 * 9 8 7 23 23 C 1.31960 * 120.90624 * 359.96021 * 22 9 8 24 24 C 1.50703 * 120.49645 * 180.02562 * 23 22 9 25 25 H 1.08997 * 109.47004 * 59.99760 * 1 2 3 26 26 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46421 * 299.99714 * 1 2 3 28 28 H 1.09006 * 109.47069 * 240.00146 * 2 1 3 29 29 H 1.09003 * 109.47666 * 120.00406 * 2 1 3 30 30 H 1.08001 * 120.49148 * 359.75047 * 7 6 4 31 31 H 0.97008 * 119.99866 * 179.97438 * 10 9 8 32 32 H 1.08996 * 109.46724 * 59.99766 * 13 11 10 33 33 H 1.08997 * 109.46904 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.46595 * 300.00284 * 13 11 10 35 35 H 0.97000 * 119.99914 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46943 * 263.65961 * 24 23 22 37 37 H 1.08994 * 109.46991 * 23.65906 * 24 23 22 38 38 H 1.09001 * 109.46689 * 143.66204 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5454 -0.0005 5 8 4.0902 0.5818 -0.0005 6 6 3.9134 2.9077 0.0000 7 6 3.0827 4.0299 -0.1264 8 7 3.6257 5.2322 -0.1158 9 6 4.9375 5.3864 0.0114 10 7 5.4642 6.6610 0.0171 11 6 4.5784 7.8201 -0.1168 12 1 3.7534 7.5717 -0.7843 13 6 4.0252 8.2008 1.2580 14 6 5.3528 8.9811 -0.6856 15 1 6.4000 8.8667 -0.9239 16 6 4.7243 10.1889 -0.9027 17 7 3.4490 10.3279 -0.6129 18 14 5.6841 11.6277 -1.6084 19 1 5.5995 11.5998 -3.0908 20 1 5.1100 12.9008 -1.1037 21 1 7.1059 11.5263 -1.1917 22 7 5.7573 4.3504 0.1324 23 6 5.2932 3.1151 0.1314 24 6 6.2328 1.9450 0.2700 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0142 3.9118 -0.2303 31 1 6.4212 6.7899 0.1097 32 1 4.8503 8.4491 1.9256 33 1 3.3658 9.0630 1.1583 34 1 3.4651 7.3610 1.6694 35 1 3.0069 11.1778 -0.7653 36 1 6.4741 1.5538 -0.7183 37 1 7.1476 2.2704 0.7653 38 1 5.7561 1.1647 0.8633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537567665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:50 Heat of formation + Delta-G solvation = -39.410415 kcal Electronic energy + Delta-G solvation = -21299.917884 eV Core-core repulsion = 17949.738757 eV Total energy + Delta-G solvation = -3350.179127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94212 -39.80943 -36.75687 -36.04054 -33.89315 -33.20671 -31.94002 -31.13415 -28.57422 -28.43270 -25.40680 -24.33052 -23.36068 -22.52802 -21.35892 -20.18832 -18.39984 -17.61571 -16.77452 -16.58547 -16.33029 -16.10646 -15.03156 -14.89572 -14.05269 -13.99862 -13.78244 -13.63170 -13.08648 -12.93358 -12.86170 -12.54604 -12.25889 -12.01048 -11.96095 -11.78286 -11.30921 -11.22601 -11.09387 -10.85513 -10.59405 -10.43657 -10.30651 -10.29350 -9.94777 -9.71879 -9.14758 -8.74049 -8.55581 -7.49713 -6.21891 -4.31449 0.95420 1.55013 2.68279 2.77567 3.20450 3.27131 3.29128 3.54071 4.23374 4.28399 4.44578 4.72959 4.77216 4.77859 4.90922 5.09535 5.11090 5.15599 5.28024 5.56692 5.59834 5.73459 5.76668 5.80470 5.96233 6.16153 6.38078 6.57186 6.72439 6.90048 6.99792 7.19047 7.44518 7.57491 7.59572 7.80598 7.87739 8.03618 8.33506 8.62841 8.89387 9.35651 10.84039 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028652 B = 0.003624 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.000065 B = 7724.017574 C = 8411.621452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.358 6.358 4 C 0.533 3.467 5 O -0.521 6.521 6 C -0.341 4.341 7 C 0.258 3.742 8 N -0.565 5.565 9 C 0.589 3.411 10 N -0.647 5.647 11 C 0.269 3.731 12 H 0.060 0.940 13 C -0.146 4.146 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 N -0.590 5.590 23 C 0.287 3.713 24 C -0.109 4.109 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.173 0.827 31 H 0.407 0.593 32 H 0.026 0.974 33 H 0.094 0.906 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -16.802 1.895 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.275 6.275 4 C 0.380 3.620 5 O -0.411 6.411 6 C -0.353 4.353 7 C 0.084 3.916 8 N -0.288 5.288 9 C 0.233 3.767 10 N -0.272 5.272 11 C 0.168 3.832 12 H 0.078 0.922 13 C -0.205 4.205 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 N -0.316 5.316 23 C 0.135 3.865 24 C -0.166 4.166 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.190 0.810 31 H 0.244 0.756 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.801 -15.637 1.877 15.996 hybrid contribution 0.431 -0.056 -0.359 0.564 sum -2.370 -15.693 1.517 15.943 Atomic orbital electron populations 1.21810 0.92763 1.02784 1.03684 1.22964 0.95173 0.80326 1.02442 1.86548 1.24211 1.32044 1.84690 1.20559 0.80119 0.89179 0.72144 1.90750 1.59768 1.42700 1.47922 1.20039 0.95907 0.92149 1.27160 1.23314 1.00152 0.85570 0.82576 1.68202 1.11729 1.25439 1.23421 1.19820 0.85250 0.87238 0.84381 1.45516 1.11452 1.01530 1.68733 1.19015 0.89570 0.79955 0.94661 0.92220 1.22101 1.00115 1.01231 0.97040 1.21188 0.96957 0.95653 1.43988 0.91923 1.24848 0.95014 0.98561 0.95022 1.69887 1.09494 1.25704 1.46767 0.86402 0.79949 0.81252 0.79260 1.20468 1.20961 1.19783 1.67965 1.38906 0.98358 1.26359 1.21448 0.90371 0.92197 0.82459 1.21042 0.97742 0.93893 1.03969 0.91388 0.90423 0.91410 0.91344 0.91366 0.80976 0.75632 0.95448 0.88753 0.96437 0.92419 0.89532 0.90787 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.67 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.36 -4.46 9.58 -40.61 -0.39 -4.85 16 4 C 0.53 7.68 7.84 34.47 0.27 7.95 16 5 O -0.52 -7.91 13.30 -19.27 -0.26 -8.16 16 6 C -0.34 -5.39 5.90 -104.71 -0.62 -6.00 16 7 C 0.26 4.21 10.89 -16.78 -0.18 4.03 16 8 N -0.57 -11.27 9.15 -13.64 -0.12 -11.40 16 9 C 0.59 12.05 8.39 -323.05 -2.71 9.34 16 10 N -0.65 -13.86 5.19 -56.98 -0.30 -14.15 16 11 C 0.27 6.57 2.54 -69.08 -0.18 6.40 16 12 H 0.06 1.62 7.49 -51.93 -0.39 1.23 16 13 C -0.15 -3.48 9.27 37.16 0.34 -3.14 16 14 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 17 N -0.88 -23.91 11.32 55.43 0.63 -23.29 16 18 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 N -0.59 -11.04 10.37 -9.88 -0.10 -11.14 16 23 C 0.29 4.74 6.87 -81.82 -0.56 4.18 16 24 C -0.11 -1.46 8.99 36.01 0.32 -1.14 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.17 2.28 7.72 -52.49 -0.41 1.87 16 31 H 0.41 8.13 8.65 -40.82 -0.35 7.78 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.32 5.94 -51.93 -0.31 1.01 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -28.71 326.18 -8.85 -37.56 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.12 Total: 6.02 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -3.09 Total: 9.21 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.10 Total: -59.98 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.65 Total: -13.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.71 -8.85 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537567665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.848 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds