Wall clock time and date at job start Tue Mar 31 2020 01:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47598 * 2 1 4 4 C 1.34744 * 117.00174 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00495 * 359.97438 * 4 3 2 6 6 C 1.47419 * 119.99670 * 180.02562 * 4 3 2 7 7 C 1.40190 * 120.87588 * 353.92112 * 6 4 3 8 8 N 1.31932 * 119.00461 * 179.72536 * 7 6 4 9 9 C 1.32691 * 120.90385 * 0.02562 * 8 7 6 10 10 N 1.37906 * 119.03602 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00037 * 359.97438 * 10 9 8 12 12 H 1.08993 * 109.46979 * 325.00235 * 11 10 9 13 13 C 1.53008 * 109.47183 * 84.99969 * 11 10 9 14 14 C 1.50700 * 109.47320 * 204.99713 * 11 10 9 15 15 H 1.07999 * 119.99774 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99983 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00135 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99834 * 180.02562 * 16 14 11 19 19 H 1.48509 * 109.47115 * 90.00131 * 18 16 14 20 20 H 1.48493 * 109.46981 * 209.99986 * 18 16 14 21 21 H 1.48503 * 109.47137 * 330.00137 * 18 16 14 22 22 N 1.32667 * 121.92804 * 0.02562 * 9 8 7 23 23 C 1.31960 * 120.90624 * 359.96021 * 22 9 8 24 24 C 1.50703 * 120.49645 * 180.02562 * 23 22 9 25 25 H 1.08997 * 109.47004 * 59.99760 * 1 2 3 26 26 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46421 * 299.99714 * 1 2 3 28 28 H 1.09006 * 109.47069 * 240.00146 * 2 1 3 29 29 H 1.09003 * 109.47666 * 120.00406 * 2 1 3 30 30 H 1.08001 * 120.49148 * 359.75047 * 7 6 4 31 31 H 0.97008 * 119.99866 * 179.97438 * 10 9 8 32 32 H 1.08996 * 109.46724 * 59.99766 * 13 11 10 33 33 H 1.08997 * 109.46904 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.46595 * 300.00284 * 13 11 10 35 35 H 0.97000 * 119.99914 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46943 * 263.65961 * 24 23 22 37 37 H 1.08994 * 109.46991 * 23.65906 * 24 23 22 38 38 H 1.09001 * 109.46689 * 143.66204 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5454 -0.0005 5 8 4.0902 0.5818 -0.0005 6 6 3.9134 2.9077 0.0000 7 6 3.0827 4.0299 -0.1264 8 7 3.6257 5.2322 -0.1158 9 6 4.9375 5.3864 0.0114 10 7 5.4642 6.6610 0.0171 11 6 4.5784 7.8201 -0.1168 12 1 3.7534 7.5717 -0.7843 13 6 4.0252 8.2008 1.2580 14 6 5.3528 8.9811 -0.6856 15 1 6.4000 8.8667 -0.9239 16 6 4.7243 10.1889 -0.9027 17 7 3.4490 10.3279 -0.6129 18 14 5.6841 11.6277 -1.6084 19 1 5.5995 11.5998 -3.0908 20 1 5.1100 12.9008 -1.1037 21 1 7.1059 11.5263 -1.1917 22 7 5.7573 4.3504 0.1324 23 6 5.2932 3.1151 0.1314 24 6 6.2328 1.9450 0.2700 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0142 3.9118 -0.2303 31 1 6.4212 6.7899 0.1097 32 1 4.8503 8.4491 1.9256 33 1 3.3658 9.0630 1.1583 34 1 3.4651 7.3610 1.6694 35 1 3.0069 11.1778 -0.7653 36 1 6.4741 1.5538 -0.7183 37 1 7.1476 2.2704 0.7653 38 1 5.7561 1.1647 0.8633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537567665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:49 Heat of formation + Delta-G solvation = -54.323000 kcal Electronic energy + Delta-G solvation = -21300.564542 eV Core-core repulsion = 17949.738757 eV Total energy + Delta-G solvation = -3350.825786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27105 -40.99733 -38.06455 -37.48739 -35.27924 -34.95467 -33.07459 -32.35123 -30.26985 -29.66149 -27.37230 -25.64809 -24.42058 -23.84479 -22.54897 -21.82084 -19.87649 -18.93993 -18.12797 -17.92320 -17.60208 -17.48641 -16.78510 -16.32445 -15.42726 -15.38972 -15.02379 -14.72045 -14.47877 -14.21104 -14.14050 -13.73704 -13.58683 -13.32904 -13.04621 -12.94059 -12.84718 -12.77281 -12.61505 -12.39363 -12.29535 -12.12282 -11.75685 -11.45574 -11.27279 -11.11829 -11.06156 -10.57453 -10.12665 -9.07339 -8.20029 -6.36476 -0.39211 0.19764 1.44066 1.44776 1.53562 1.55220 1.65945 2.00981 2.42449 2.83262 3.10312 3.12605 3.49321 3.66992 3.76625 4.07022 4.10517 4.16577 4.43622 4.54538 4.71188 4.71312 4.80714 4.89371 4.91373 5.00275 5.02639 5.07386 5.16105 5.28608 5.44523 5.52501 5.59644 5.74323 5.94649 5.99242 6.18016 6.64478 6.71781 6.76015 7.28477 7.40392 8.85786 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028652 B = 0.003624 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.000065 B = 7724.017574 C = 8411.621452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.359 6.359 4 C 0.540 3.460 5 O -0.526 6.526 6 C -0.333 4.333 7 C 0.257 3.743 8 N -0.596 5.596 9 C 0.578 3.422 10 N -0.658 5.658 11 C 0.283 3.717 12 H 0.026 0.974 13 C -0.131 4.131 14 C -0.556 4.556 15 H 0.065 0.935 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.266 1.266 22 N -0.597 5.597 23 C 0.276 3.724 24 C -0.102 4.102 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.201 0.799 31 H 0.411 0.589 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -18.281 1.795 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.276 6.276 4 C 0.386 3.614 5 O -0.418 6.418 6 C -0.344 4.344 7 C 0.086 3.914 8 N -0.320 5.320 9 C 0.222 3.778 10 N -0.286 5.286 11 C 0.180 3.820 12 H 0.044 0.956 13 C -0.190 4.190 14 C -0.594 4.594 15 H 0.083 0.917 16 C -0.178 4.178 17 N -0.547 5.547 18 Si 0.793 3.207 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.191 1.191 22 N -0.323 5.323 23 C 0.125 3.875 24 C -0.158 4.158 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.218 0.782 31 H 0.248 0.752 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.777 -17.197 1.782 17.511 hybrid contribution 0.318 0.163 -0.327 0.484 sum -2.459 -17.034 1.455 17.272 Atomic orbital electron populations 1.21839 0.90699 1.04355 1.03633 1.23317 0.96767 0.78682 1.02907 1.86539 1.22772 1.34184 1.84086 1.20231 0.80871 0.88277 0.72037 1.90749 1.60216 1.42672 1.48125 1.20242 0.95823 0.93033 1.25296 1.23778 1.01463 0.84726 0.81478 1.68198 1.11846 1.27307 1.24647 1.19895 0.85760 0.87258 0.84930 1.45120 1.11143 1.01395 1.70928 1.18558 0.88919 0.80619 0.93853 0.95590 1.21904 0.99681 1.00355 0.97077 1.21503 0.97261 0.96449 1.44170 0.91690 1.25648 0.95855 1.01010 0.95277 1.70006 1.10802 1.26334 1.47523 0.85404 0.78848 0.78075 0.78367 1.20286 1.20584 1.19068 1.67988 1.38787 0.98757 1.26734 1.22042 0.91474 0.92239 0.81729 1.21081 0.97484 0.92541 1.04732 0.91442 0.88032 0.91446 0.90946 0.90880 0.78230 0.75157 0.95157 0.90903 0.96021 0.92325 0.88415 0.89709 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 71.98 0.74 -0.91 16 2 C 0.06 0.93 6.20 71.98 0.45 1.38 16 3 O -0.36 -8.18 9.58 -56.55 -0.54 -8.72 16 4 C 0.54 14.46 7.84 70.24 0.55 15.01 16 5 O -0.53 -14.79 13.30 19.80 0.26 -14.53 16 6 C -0.33 -10.08 5.90 -19.92 -0.12 -10.19 16 7 C 0.26 8.19 10.89 85.15 0.93 9.12 16 8 N -0.60 -23.97 9.15 -197.07 -1.80 -25.77 16 9 C 0.58 23.84 8.39 261.57 2.19 26.03 16 10 N -0.66 -28.73 5.19 -334.17 -1.74 -30.47 16 11 C 0.28 14.19 2.54 44.25 0.11 14.30 16 12 H 0.03 1.47 7.49 -2.39 -0.02 1.46 16 13 C -0.13 -6.39 9.27 71.98 0.67 -5.73 16 14 C -0.56 -29.23 8.73 25.60 0.22 -29.01 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.02 1.22 5.30 84.65 0.45 1.67 16 17 N -0.91 -50.09 11.32 21.45 0.24 -49.85 16 18 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 N -0.60 -22.09 10.37 -185.18 -1.92 -24.01 16 23 C 0.28 8.77 6.87 43.00 0.30 9.06 16 24 C -0.10 -2.51 8.99 71.24 0.64 -1.87 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.20 5.01 7.72 -2.91 -0.02 4.99 16 31 H 0.41 16.73 8.65 -92.70 -0.80 15.93 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 34 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.10 2.52 5.94 -2.39 -0.01 2.50 16 Total: -1.00 -61.25 326.18 3.94 -57.31 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.28 Total: 23.52 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 7.13 Total: 28.86 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -5.22 Total: -130.10 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.28 Total: -23.25 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -61.25 3.94 -57.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537567665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.984 kcal (2) G-P(sol) polarization free energy of solvation -61.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds