Wall clock time and date at job start Tue Mar 31 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 117.00055 * 2 1 4 4 C 1.38781 * 120.49576 * 0.02562 * 3 2 1 5 5 C 1.38793 * 118.45209 * 180.02562 * 4 3 2 6 6 C 1.38069 * 119.35225 * 0.02562 * 5 4 3 7 7 N 1.31971 * 120.95342 * 359.97438 * 6 5 4 8 8 C 1.32274 * 121.69202 * 0.02562 * 7 6 5 9 9 N 1.39574 * 119.73147 * 179.71915 * 8 7 6 10 10 C 1.34783 * 119.99874 * 0.02562 * 9 8 7 11 11 O 1.21582 * 119.99856 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00120 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00279 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47302 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47087 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47147 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00173 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00219 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00082 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47526 * 89.99011 * 20 18 16 22 22 H 1.48498 * 109.47261 * 209.99922 * 20 18 16 23 23 H 1.48500 * 109.46945 * 329.99596 * 20 18 16 24 24 H 1.08998 * 109.47183 * 59.99584 * 1 2 3 25 25 H 1.08999 * 109.47012 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46901 * 299.99632 * 1 2 3 27 27 H 1.08008 * 120.77499 * 359.97438 * 4 3 2 28 28 H 1.07991 * 120.32590 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.52458 * 180.02562 * 6 5 4 30 30 H 0.96998 * 120.00326 * 179.97438 * 9 8 7 31 31 H 0.97008 * 120.00068 * 359.97438 * 12 10 9 32 32 H 1.09006 * 109.46505 * 299.99891 * 13 12 10 33 33 H 1.08992 * 109.47109 * 59.99498 * 13 12 10 34 34 H 1.09006 * 109.47161 * 299.99378 * 14 13 12 35 35 H 1.08998 * 109.47786 * 59.99278 * 14 13 12 36 36 H 1.09000 * 109.46379 * 299.99267 * 15 14 13 37 37 H 1.08992 * 109.47269 * 59.99421 * 15 14 13 38 38 H 0.97008 * 119.99966 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.3006 2.3821 0.0005 5 6 1.9744 3.5954 0.0000 6 6 3.3551 3.6029 -0.0016 7 7 4.0400 2.4748 -0.0021 8 6 3.4385 1.2967 -0.0016 9 7 4.2032 0.1291 -0.0081 10 6 5.5489 0.2049 -0.0144 11 8 6.0966 1.2903 -0.0148 12 7 6.2873 -0.9225 -0.0201 13 6 7.7500 -0.8402 -0.0263 14 6 8.3402 -2.2517 -0.0327 15 6 9.8678 -2.1656 -0.0386 16 6 10.4493 -3.5560 -0.0442 17 1 9.7947 -4.4150 -0.0433 18 6 11.8168 -3.7313 -0.0506 19 7 12.3242 -4.9446 -0.0550 20 14 12.9490 -2.2455 -0.0515 21 1 13.2549 -1.8553 1.3482 22 1 14.2104 -2.5847 -0.7579 23 1 12.2816 -1.1151 -0.7457 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2210 2.3495 0.0005 28 1 1.4242 4.5247 -0.0001 29 1 3.8822 4.5454 -0.0017 30 1 3.7662 -0.7369 -0.0074 31 1 5.8503 -1.7886 -0.0194 32 1 8.0799 -0.3047 -0.9167 33 1 8.0877 -0.3087 0.8633 34 1 8.0104 -2.7875 0.8574 35 1 8.0024 -2.7829 -0.9225 36 1 10.1980 -1.6297 -0.9284 37 1 10.2053 -1.6347 0.8515 38 1 13.2864 -5.0679 -0.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547787626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:24 Heat of formation + Delta-G solvation = -21.490832 kcal Electronic energy + Delta-G solvation = -20652.681797 eV Core-core repulsion = 17303.279721 eV Total energy + Delta-G solvation = -3349.402076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23961 -39.63325 -38.33230 -35.74733 -34.71558 -33.28199 -32.04103 -31.39674 -29.96723 -27.84221 -27.06768 -24.05202 -23.25560 -22.51162 -20.85975 -20.25104 -18.92230 -18.21601 -17.79670 -16.72671 -16.58280 -16.37407 -15.58079 -15.44377 -14.74463 -14.65274 -14.47707 -14.15339 -13.93530 -13.63518 -13.61921 -12.71152 -12.66851 -12.05996 -11.92403 -11.87363 -11.82885 -11.04078 -10.98925 -10.79180 -10.45279 -10.03356 -9.84472 -9.69399 -9.68288 -9.25035 -9.19935 -8.80446 -8.53034 -8.04113 -6.04005 -4.02590 0.91709 1.01550 2.46270 2.74266 3.22952 3.34147 3.41510 3.46550 3.76746 4.00493 4.28251 4.40365 4.47139 4.65889 4.70587 4.74536 4.89381 5.04573 5.10776 5.30355 5.52105 5.60247 5.72650 5.77645 6.04943 6.08629 6.23463 6.38192 6.50142 6.66685 6.83931 6.85066 6.91355 7.26665 7.40006 7.71828 7.79057 8.13792 8.52590 8.70235 8.99867 9.58439 11.09220 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036173 B = 0.002784 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.868147 B =10056.327869 C =10799.140547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.036 3.964 4 C -0.138 4.138 5 C -0.174 4.174 6 C 0.098 3.902 7 N -0.439 5.439 8 C 0.370 3.630 9 N -0.666 5.666 10 C 0.690 3.310 11 O -0.533 6.533 12 N -0.738 5.738 13 C 0.133 3.867 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.416 0.584 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.817 13.721 0.103 31.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C -0.015 4.015 4 C -0.164 4.164 5 C -0.196 4.196 6 C -0.059 4.059 7 N -0.154 5.154 8 C 0.136 3.864 9 N -0.316 5.316 10 C 0.389 3.611 11 O -0.404 6.404 12 N -0.393 5.393 13 C 0.010 3.990 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.074 0.926 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.253 0.747 31 H 0.229 0.771 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.010 14.391 0.096 29.726 hybrid contribution -0.967 -0.119 0.027 0.975 sum -26.977 14.271 0.123 30.519 Atomic orbital electron populations 1.23071 0.77931 1.04267 1.01316 1.86019 1.21731 1.25784 1.89440 1.19386 0.91024 0.85974 1.05129 1.21435 1.00417 0.91475 1.03110 1.21884 0.95651 0.98153 1.03915 1.22633 0.91079 0.95955 0.96268 1.67827 1.37984 0.96191 1.13398 1.17624 0.83900 0.87114 0.97808 1.42689 1.05615 1.07364 1.75889 1.16059 0.80547 0.85444 0.79007 1.91035 1.69866 1.26060 1.53477 1.45371 1.07969 1.06770 1.79237 1.21553 0.75813 0.99589 1.02016 1.21712 0.98704 0.92932 1.01746 1.19503 0.90497 0.98174 0.96736 1.21100 0.92238 0.91591 1.51001 0.91019 1.25026 0.98282 0.95718 0.94476 1.69915 1.12330 1.20935 1.51108 0.86773 0.80220 0.83718 0.78595 1.20243 1.21410 1.18814 0.92599 0.87917 0.92608 0.84155 0.84557 0.82172 0.74701 0.77120 0.91783 0.91786 0.92113 0.92078 0.96237 0.96674 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.83 101.05 0.99 1.13 16 2 O -0.32 -2.72 9.75 -19.70 -0.19 -2.91 16 3 C 0.04 0.37 6.72 -38.92 -0.26 0.10 16 4 C -0.14 -1.10 9.14 -39.18 -0.36 -1.46 16 5 C -0.17 -1.40 10.10 -39.44 -0.40 -1.80 16 6 C 0.10 1.06 11.17 -17.55 -0.20 0.86 16 7 N -0.44 -6.55 7.87 -12.23 -0.10 -6.64 16 8 C 0.37 4.97 7.45 -154.44 -1.15 3.82 16 9 N -0.67 -8.64 5.40 -15.67 -0.08 -8.73 16 10 C 0.69 11.15 8.53 -86.92 -0.74 10.41 16 11 O -0.53 -10.79 14.59 5.29 0.08 -10.72 16 12 N -0.74 -10.72 5.56 -65.23 -0.36 -11.08 16 13 C 0.13 2.29 5.67 -4.04 -0.02 2.26 16 14 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 16 C -0.52 -14.79 9.66 -34.44 -0.33 -15.13 16 17 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 20 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.06 0.20 7.70 -51.93 -0.40 -0.20 16 25 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.20 7.70 -51.93 -0.40 -0.20 16 27 H 0.14 0.68 6.44 -52.48 -0.34 0.35 16 28 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.42 4.09 8.06 -40.82 -0.33 3.76 16 31 H 0.40 4.52 8.49 -40.82 -0.35 4.18 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 37 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -36.32 324.68 -7.60 -43.93 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.13 Total: 1.75 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.82 Total: -0.60 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.23 Total: -53.64 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.11 Total: -13.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.32 -7.60 -43.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547787626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.438 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds