Wall clock time and date at job start Tue Mar 31 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 117.00055 * 2 1 4 4 C 1.38781 * 120.49576 * 0.02562 * 3 2 1 5 5 C 1.38793 * 118.45209 * 180.02562 * 4 3 2 6 6 C 1.38069 * 119.35225 * 0.02562 * 5 4 3 7 7 N 1.31971 * 120.95342 * 359.97438 * 6 5 4 8 8 C 1.32274 * 121.69202 * 0.02562 * 7 6 5 9 9 N 1.39574 * 119.73147 * 179.71915 * 8 7 6 10 10 C 1.34783 * 119.99874 * 0.02562 * 9 8 7 11 11 O 1.21582 * 119.99856 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00120 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00279 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47302 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47087 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47147 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00173 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00219 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00082 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47526 * 89.99011 * 20 18 16 22 22 H 1.48498 * 109.47261 * 209.99922 * 20 18 16 23 23 H 1.48500 * 109.46945 * 329.99596 * 20 18 16 24 24 H 1.08998 * 109.47183 * 59.99584 * 1 2 3 25 25 H 1.08999 * 109.47012 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46901 * 299.99632 * 1 2 3 27 27 H 1.08008 * 120.77499 * 359.97438 * 4 3 2 28 28 H 1.07991 * 120.32590 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.52458 * 180.02562 * 6 5 4 30 30 H 0.96998 * 120.00326 * 179.97438 * 9 8 7 31 31 H 0.97008 * 120.00068 * 359.97438 * 12 10 9 32 32 H 1.09006 * 109.46505 * 299.99891 * 13 12 10 33 33 H 1.08992 * 109.47109 * 59.99498 * 13 12 10 34 34 H 1.09006 * 109.47161 * 299.99378 * 14 13 12 35 35 H 1.08998 * 109.47786 * 59.99278 * 14 13 12 36 36 H 1.09000 * 109.46379 * 299.99267 * 15 14 13 37 37 H 1.08992 * 109.47269 * 59.99421 * 15 14 13 38 38 H 0.97008 * 119.99966 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.3006 2.3821 0.0005 5 6 1.9744 3.5954 0.0000 6 6 3.3551 3.6029 -0.0016 7 7 4.0400 2.4748 -0.0021 8 6 3.4385 1.2967 -0.0016 9 7 4.2032 0.1291 -0.0081 10 6 5.5489 0.2049 -0.0144 11 8 6.0966 1.2903 -0.0148 12 7 6.2873 -0.9225 -0.0201 13 6 7.7500 -0.8402 -0.0263 14 6 8.3402 -2.2517 -0.0327 15 6 9.8678 -2.1656 -0.0386 16 6 10.4493 -3.5560 -0.0442 17 1 9.7947 -4.4150 -0.0433 18 6 11.8168 -3.7313 -0.0506 19 7 12.3242 -4.9446 -0.0550 20 14 12.9490 -2.2455 -0.0515 21 1 13.2549 -1.8553 1.3482 22 1 14.2104 -2.5847 -0.7579 23 1 12.2816 -1.1151 -0.7457 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2210 2.3495 0.0005 28 1 1.4242 4.5247 -0.0001 29 1 3.8822 4.5454 -0.0017 30 1 3.7662 -0.7369 -0.0074 31 1 5.8503 -1.7886 -0.0194 32 1 8.0799 -0.3047 -0.9167 33 1 8.0877 -0.3087 0.8633 34 1 8.0104 -2.7875 0.8574 35 1 8.0024 -2.7829 -0.9225 36 1 10.1980 -1.6297 -0.9284 37 1 10.2053 -1.6347 0.8515 38 1 13.2864 -5.0679 -0.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547787626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:24 Heat of formation + Delta-G solvation = -48.306397 kcal Electronic energy + Delta-G solvation = -20653.844607 eV Core-core repulsion = 17303.279721 eV Total energy + Delta-G solvation = -3350.564886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07894 -40.68452 -39.02599 -37.13096 -35.87329 -35.13736 -33.34462 -32.66193 -30.85305 -28.80357 -28.26772 -25.28100 -24.07130 -23.81584 -22.24829 -21.71042 -19.84388 -19.22383 -18.84455 -18.50589 -17.42227 -17.14299 -16.65725 -16.61407 -16.12602 -15.76319 -15.59391 -15.31393 -15.06572 -14.76374 -14.63171 -14.34898 -13.79719 -13.65536 -13.29271 -12.73542 -12.69505 -12.36924 -12.31560 -11.93773 -11.87047 -11.77140 -11.57441 -11.50107 -11.31661 -10.75231 -10.46368 -10.20499 -10.07324 -8.84814 -8.28621 -6.32286 0.14841 0.31431 1.37924 1.39329 1.42664 1.51658 2.10064 2.17917 2.37398 2.91498 2.99852 3.07266 3.58004 3.84183 3.98819 4.10674 4.14978 4.22918 4.41758 4.44887 4.49101 4.51883 4.79468 4.87677 4.91130 4.94325 5.05331 5.12531 5.28719 5.39336 5.48495 5.53083 5.57488 5.65996 5.81396 6.25872 6.28513 6.75113 6.77588 7.21530 7.32560 7.55418 8.87775 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036173 B = 0.002784 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.868147 B =10056.327869 C =10799.140547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.043 3.957 4 C -0.135 4.135 5 C -0.152 4.152 6 C 0.071 3.929 7 N -0.488 5.488 8 C 0.326 3.674 9 N -0.656 5.656 10 C 0.690 3.310 11 O -0.580 6.580 12 N -0.727 5.727 13 C 0.148 3.852 14 C -0.099 4.099 15 C -0.012 4.012 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.005 3.995 19 N -0.951 5.951 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.248 1.248 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.172 0.828 30 H 0.429 0.571 31 H 0.411 0.589 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.402 15.551 0.128 34.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C -0.008 4.008 4 C -0.161 4.161 5 C -0.173 4.173 6 C -0.085 4.085 7 N -0.203 5.203 8 C 0.093 3.907 9 N -0.307 5.307 10 C 0.389 3.611 11 O -0.454 6.454 12 N -0.384 5.384 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.172 1.172 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.088 0.912 27 H 0.196 0.804 28 H 0.193 0.807 29 H 0.190 0.810 30 H 0.268 0.732 31 H 0.248 0.752 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.677 16.196 0.121 32.935 hybrid contribution -0.373 -0.723 0.021 0.813 sum -29.050 15.473 0.142 32.914 Atomic orbital electron populations 1.23412 0.75658 1.05920 1.02610 1.86011 1.24014 1.25137 1.89119 1.19393 0.90082 0.87396 1.03949 1.21919 1.02167 0.90455 1.01564 1.22288 0.94546 0.99871 1.00612 1.23007 0.92741 0.95441 0.97333 1.67657 1.40375 0.97650 1.14653 1.17868 0.85291 0.86767 1.00776 1.42436 1.04375 1.08332 1.75591 1.16185 0.81511 0.84846 0.78543 1.90994 1.71071 1.27707 1.55671 1.45079 1.06947 1.07414 1.78984 1.21182 0.77263 0.97895 1.01307 1.21476 0.95722 0.94167 1.02287 1.19466 0.93489 0.95198 0.96870 1.21462 0.92186 0.92958 1.50148 0.94334 1.25972 1.00219 0.98782 0.94245 1.70059 1.12904 1.23404 1.52783 0.85704 0.77960 0.80122 0.79177 1.19252 1.21011 1.17162 0.91230 0.86304 0.91233 0.80398 0.80709 0.81049 0.73241 0.75245 0.92613 0.92536 0.91584 0.91593 0.96053 0.96165 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.83 113.37 1.11 1.22 16 2 O -0.33 -4.95 9.75 -93.39 -0.91 -5.86 16 3 C 0.04 0.80 6.72 22.70 0.15 0.96 16 4 C -0.13 -1.71 9.14 22.53 0.21 -1.50 16 5 C -0.15 -1.99 10.10 22.36 0.23 -1.76 16 6 C 0.07 1.50 11.17 84.63 0.95 2.44 16 7 N -0.49 -14.77 7.87 -192.59 -1.52 -16.28 16 8 C 0.33 8.71 7.45 132.99 0.99 9.70 16 9 N -0.66 -17.08 5.40 -321.76 -1.74 -18.82 16 10 C 0.69 22.55 8.53 179.05 1.53 24.07 16 11 O -0.58 -24.14 14.59 -3.97 -0.06 -24.19 16 12 N -0.73 -20.84 5.56 -478.55 -2.66 -23.50 16 13 C 0.15 5.00 5.67 86.38 0.49 5.49 16 14 C -0.10 -3.66 5.27 30.59 0.16 -3.49 16 15 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 16 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 17 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 18 C 0.00 0.27 5.47 84.65 0.46 0.73 16 19 N -0.95 -59.98 13.96 21.44 0.30 -59.68 16 20 Si 0.95 45.11 27.47 68.60 1.88 47.00 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 24 H 0.07 0.23 7.70 -2.39 -0.02 0.21 16 25 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.07 0.23 7.70 -2.38 -0.02 0.21 16 27 H 0.18 0.84 6.44 -2.91 -0.02 0.82 16 28 H 0.18 0.88 8.06 -2.92 -0.02 0.86 16 29 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.43 8.25 8.06 -92.71 -0.75 7.51 16 31 H 0.41 9.02 8.49 -92.70 -0.79 8.24 16 32 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 37 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 38 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -81.41 324.68 1.45 -79.96 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -0.50 Total: 14.18 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.64 Total: 7.21 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.61 Total: -118.28 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.97 Total: -30.06 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -81.41 1.45 -79.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547787626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.651 kcal (2) G-P(sol) polarization free energy of solvation -81.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds