Wall clock time and date at job start Tue Mar 31 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46837 * 2 1 4 4 C 1.46505 * 119.99916 * 269.99760 * 3 2 1 5 5 C 1.50701 * 109.47172 * 270.00263 * 4 3 2 6 6 H 1.08003 * 119.99725 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00053 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47439 * 60.00150 * 9 7 5 11 11 H 1.48510 * 109.46812 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47239 * 299.99309 * 9 7 5 13 13 C 1.34776 * 120.00515 * 89.99799 * 3 2 1 14 14 O 1.21582 * 120.00396 * 179.97438 * 13 3 2 15 15 N 1.34774 * 119.99529 * 359.97438 * 13 3 2 16 16 C 1.39583 * 119.99853 * 179.97438 * 15 13 3 17 17 N 1.32274 * 119.72948 * 0.02562 * 16 15 13 18 18 C 1.31971 * 121.69202 * 179.72423 * 17 16 15 19 19 C 1.38069 * 120.95342 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.35225 * 359.97438 * 19 18 17 21 21 C 1.38780 * 118.45209 * 359.97438 * 20 19 18 22 22 O 1.35986 * 120.49572 * 180.02562 * 21 20 19 23 23 C 1.42900 * 117.00062 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47455 * 300.00157 * 1 2 3 26 26 H 1.09000 * 109.47012 * 60.00482 * 1 2 3 27 27 H 1.08993 * 109.47455 * 239.99843 * 2 1 3 28 28 H 1.09000 * 109.47012 * 119.99517 * 2 1 3 29 29 H 1.08999 * 109.46994 * 30.00287 * 4 3 2 30 30 H 1.08996 * 109.47375 * 149.99719 * 4 3 2 31 31 H 0.96991 * 119.99353 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00610 * 0.02562 * 15 13 3 33 33 H 1.07993 * 119.52205 * 180.02562 * 18 17 16 34 34 H 1.07991 * 120.32185 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.76869 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.46834 * 60.00331 * 23 22 21 37 37 H 1.08999 * 109.47020 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.47401 * 300.00664 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1266 -3.6177 9 14 5.9138 2.0975 -3.4163 10 1 6.1418 0.6410 -3.5942 11 1 6.1613 2.7975 -4.7025 12 1 6.8409 2.6209 -2.3810 13 6 2.2429 2.0167 1.1671 14 8 2.6485 3.1628 1.1671 15 7 2.0178 1.3815 2.3343 16 6 2.2508 2.0394 3.5431 17 7 2.6922 3.2863 3.5368 18 6 2.9204 3.9467 4.6564 19 6 2.7058 3.3558 5.8857 20 6 2.2429 2.0485 5.9407 21 6 2.0105 1.3787 4.7477 22 8 1.5563 0.0970 4.7530 23 6 1.3370 -0.5083 6.0288 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0954 3.1410 -1.1385 31 1 3.6755 3.5170 -4.4435 32 1 1.6945 0.4670 2.3344 33 1 3.2802 4.9639 4.6104 34 1 2.8955 3.9058 6.7955 35 1 2.0676 1.5639 6.8898 36 1 0.5948 0.0677 6.5815 37 1 0.9768 -1.5277 5.8903 38 1 2.2725 -0.5267 6.5879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548118615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:36 Heat of formation + Delta-G solvation = -4.344545 kcal Electronic energy + Delta-G solvation = -21964.722863 eV Core-core repulsion = 18616.064306 eV Total energy + Delta-G solvation = -3348.658557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87310 -39.22264 -38.02321 -35.33836 -34.40187 -32.64660 -31.63691 -30.03956 -29.75430 -27.58935 -26.85410 -23.80748 -23.01152 -22.89777 -22.05653 -19.31934 -18.52513 -17.76336 -16.91185 -16.40490 -16.24319 -16.04147 -15.23882 -14.73942 -14.58489 -14.35374 -13.98265 -13.65472 -13.55780 -13.41358 -12.97417 -12.40381 -12.39104 -11.98961 -11.68258 -11.63994 -11.56125 -11.12346 -10.89373 -10.73322 -10.46161 -10.45659 -10.05012 -9.71414 -9.54691 -9.31755 -8.65044 -8.35042 -7.78035 -7.46123 -5.96081 -4.00151 1.27606 1.35147 3.03010 3.07330 3.37697 3.41773 3.46159 3.78039 4.27146 4.35862 4.53573 4.59780 4.68585 4.91453 4.92448 5.00684 5.18518 5.24721 5.35770 5.38095 5.42068 5.65169 5.73254 5.86713 6.03451 6.08308 6.26046 6.41291 6.51787 6.67197 6.84610 7.26927 7.39799 7.61605 7.69382 8.01631 8.25642 8.32732 8.74844 9.01108 9.43140 9.65535 11.11764 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.004768 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.026839 B = 5870.704611 C = 6550.722695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.610 5.610 4 C 0.262 3.738 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.688 3.312 14 O -0.524 6.524 15 N -0.669 5.669 16 C 0.379 3.621 17 N -0.437 5.437 18 C 0.101 3.899 19 C -0.184 4.184 20 C -0.137 4.137 21 C 0.026 3.974 22 O -0.318 6.318 23 C 0.030 3.970 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 -7.824 19.775 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.346 5.346 4 C 0.143 3.857 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.389 3.611 14 O -0.394 6.394 15 N -0.321 5.321 16 C 0.144 3.856 17 N -0.152 5.152 18 C -0.057 4.057 19 C -0.206 4.206 20 C -0.164 4.164 21 C -0.025 4.025 22 O -0.230 6.230 23 C -0.065 4.065 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.176 0.824 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.639 -6.599 18.442 20.382 hybrid contribution 0.685 -1.095 0.801 1.520 sum -4.954 -7.694 19.243 21.308 Atomic orbital electron populations 1.22251 0.96780 1.01383 1.02491 1.21363 0.93532 0.84546 1.02360 1.47646 1.67620 1.13204 1.06145 1.19197 0.96078 0.93524 0.76890 1.21440 0.97046 1.31760 1.06105 0.92594 1.24912 0.97734 0.94969 0.96415 1.69926 1.35667 1.33538 1.14381 0.86573 0.85017 0.78137 0.77745 1.20355 1.21226 1.20228 1.16023 0.80068 0.85185 0.79854 1.91005 1.48320 1.15503 1.84621 1.43123 1.68538 1.17307 1.03083 1.17772 0.95547 0.89088 0.83227 1.67932 1.12329 1.04829 1.30125 1.22649 0.96441 0.99937 0.86659 1.21814 1.03958 0.95308 0.99543 1.21361 1.02466 0.96021 0.96535 1.19401 1.03591 0.85865 0.93597 1.86018 1.81384 1.23965 1.31673 1.23023 1.00795 0.98422 0.84259 0.92147 0.93169 0.91804 0.89541 0.92568 0.94845 0.93731 0.92745 0.75041 0.82384 0.84879 0.84475 0.92783 0.88175 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.11 1.79 5.89 -4.04 -0.02 1.77 16 3 N -0.61 -13.63 2.46 -180.81 -0.44 -14.07 16 4 C 0.26 7.07 5.16 -5.19 -0.03 7.04 16 5 C -0.52 -15.30 9.39 -34.44 -0.32 -15.62 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.69 15.93 8.24 -86.92 -0.72 15.22 16 14 O -0.52 -14.47 14.17 5.29 0.08 -14.40 16 15 N -0.67 -12.44 5.26 -15.67 -0.08 -12.52 16 16 C 0.38 6.79 7.45 -154.43 -1.15 5.64 16 17 N -0.44 -8.50 7.87 -12.22 -0.10 -8.59 16 18 C 0.10 1.47 11.17 -17.55 -0.20 1.27 16 19 C -0.18 -2.07 10.10 -39.44 -0.40 -2.47 16 20 C -0.14 -1.53 9.14 -39.18 -0.36 -1.89 16 21 C 0.03 0.36 6.72 -38.92 -0.26 0.10 16 22 O -0.32 -3.74 9.75 -19.70 -0.19 -3.93 16 23 C 0.03 0.21 9.83 101.05 0.99 1.21 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 28 H 0.06 0.80 6.36 -51.93 -0.33 0.47 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.36 7.42 -51.93 -0.39 0.97 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.41 6.39 5.78 -40.82 -0.24 6.16 16 33 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 1.05 6.44 -52.48 -0.34 0.71 16 36 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -36.46 324.78 -7.32 -43.78 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.01 Total: 1.86 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -2.18 Total: 11.94 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.11 Total: -61.57 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.12 Total: -18.33 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.46 -7.32 -43.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548118615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.434 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds