Wall clock time and date at job start Tue Mar 31 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46837 * 2 1 4 4 C 1.46505 * 119.99916 * 269.99760 * 3 2 1 5 5 C 1.50701 * 109.47172 * 270.00263 * 4 3 2 6 6 H 1.08003 * 119.99725 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00053 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47439 * 60.00150 * 9 7 5 11 11 H 1.48510 * 109.46812 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47239 * 299.99309 * 9 7 5 13 13 C 1.34776 * 120.00515 * 89.99799 * 3 2 1 14 14 O 1.21582 * 120.00396 * 179.97438 * 13 3 2 15 15 N 1.34774 * 119.99529 * 359.97438 * 13 3 2 16 16 C 1.39583 * 119.99853 * 179.97438 * 15 13 3 17 17 N 1.32274 * 119.72948 * 0.02562 * 16 15 13 18 18 C 1.31971 * 121.69202 * 179.72423 * 17 16 15 19 19 C 1.38069 * 120.95342 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.35225 * 359.97438 * 19 18 17 21 21 C 1.38780 * 118.45209 * 359.97438 * 20 19 18 22 22 O 1.35986 * 120.49572 * 180.02562 * 21 20 19 23 23 C 1.42900 * 117.00062 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47455 * 300.00157 * 1 2 3 26 26 H 1.09000 * 109.47012 * 60.00482 * 1 2 3 27 27 H 1.08993 * 109.47455 * 239.99843 * 2 1 3 28 28 H 1.09000 * 109.47012 * 119.99517 * 2 1 3 29 29 H 1.08999 * 109.46994 * 30.00287 * 4 3 2 30 30 H 1.08996 * 109.47375 * 149.99719 * 4 3 2 31 31 H 0.96991 * 119.99353 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00610 * 0.02562 * 15 13 3 33 33 H 1.07993 * 119.52205 * 180.02562 * 18 17 16 34 34 H 1.07991 * 120.32185 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.76869 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.46834 * 60.00331 * 23 22 21 37 37 H 1.08999 * 109.47020 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.47401 * 300.00664 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1266 -3.6177 9 14 5.9138 2.0975 -3.4163 10 1 6.1418 0.6410 -3.5942 11 1 6.1613 2.7975 -4.7025 12 1 6.8409 2.6209 -2.3810 13 6 2.2429 2.0167 1.1671 14 8 2.6485 3.1628 1.1671 15 7 2.0178 1.3815 2.3343 16 6 2.2508 2.0394 3.5431 17 7 2.6922 3.2863 3.5368 18 6 2.9204 3.9467 4.6564 19 6 2.7058 3.3558 5.8857 20 6 2.2429 2.0485 5.9407 21 6 2.0105 1.3787 4.7477 22 8 1.5563 0.0970 4.7530 23 6 1.3370 -0.5083 6.0288 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0954 3.1410 -1.1385 31 1 3.6755 3.5170 -4.4435 32 1 1.6945 0.4670 2.3344 33 1 3.2802 4.9639 4.6104 34 1 2.8955 3.9058 6.7955 35 1 2.0676 1.5639 6.8898 36 1 0.5948 0.0677 6.5815 37 1 0.9768 -1.5277 5.8903 38 1 2.2725 -0.5267 6.5879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548118615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:36 Heat of formation + Delta-G solvation = -29.887933 kcal Electronic energy + Delta-G solvation = -21965.830508 eV Core-core repulsion = 18616.064306 eV Total energy + Delta-G solvation = -3349.766202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06513 -40.70154 -39.01079 -37.01094 -35.96705 -34.76063 -32.71210 -31.62934 -30.91976 -28.83497 -28.23507 -25.46880 -24.52423 -23.94962 -23.53337 -20.85049 -19.78774 -18.84070 -18.56368 -18.30624 -17.44660 -16.98872 -16.87306 -16.30605 -16.05802 -15.51604 -15.26155 -15.06850 -14.83460 -14.61156 -14.30492 -14.20059 -13.65427 -13.28025 -13.25894 -13.09344 -12.69222 -12.52313 -12.33131 -12.28601 -12.19774 -11.97892 -11.85418 -11.66003 -11.25245 -10.61955 -10.41033 -10.07319 -9.48155 -8.78266 -8.19244 -6.34300 0.19265 0.35710 1.36194 1.41412 1.48111 1.61796 2.20939 2.26074 2.40920 2.91202 2.96908 3.09476 3.60331 3.86080 3.94272 4.07369 4.16286 4.35777 4.44772 4.47802 4.49783 4.52461 4.80663 4.83217 4.94016 4.95100 5.02482 5.13597 5.20840 5.34228 5.37743 5.55000 5.59598 5.79979 5.99587 6.09462 6.31270 6.73576 6.89214 7.29002 7.34752 7.76034 8.87017 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.004768 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.026839 B = 5870.704611 C = 6550.722695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.616 5.616 4 C 0.281 3.719 5 C -0.543 4.543 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.282 1.282 13 C 0.685 3.315 14 O -0.583 6.583 15 N -0.658 5.658 16 C 0.326 3.674 17 N -0.495 5.495 18 C 0.070 3.930 19 C -0.153 4.153 20 C -0.131 4.131 21 C 0.041 3.959 22 O -0.331 6.331 23 C 0.018 3.982 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.029 0.971 30 H -0.004 1.004 31 H 0.267 0.733 32 H 0.424 0.576 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -10.043 22.769 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.352 5.352 4 C 0.159 3.841 5 C -0.582 4.582 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.200 1.200 12 H -0.208 1.208 13 C 0.386 3.614 14 O -0.458 6.458 15 N -0.311 5.311 16 C 0.093 3.907 17 N -0.211 5.211 18 C -0.087 4.087 19 C -0.174 4.174 20 C -0.157 4.157 21 C -0.010 4.010 22 O -0.244 6.244 23 C -0.076 4.076 24 H 0.119 0.881 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.185 0.815 34 H 0.196 0.804 35 H 0.201 0.799 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.501 -8.889 21.503 23.909 hybrid contribution 0.571 -0.430 0.089 0.721 sum -4.930 -9.319 21.592 24.028 Atomic orbital electron populations 1.22159 0.94421 1.03674 1.01544 1.21688 0.95434 0.81536 1.03574 1.47535 1.67912 1.15104 1.04656 1.18622 0.95289 0.91240 0.78902 1.21679 0.97929 1.32089 1.06464 0.93304 1.25828 1.02353 0.94421 0.96342 1.70046 1.37760 1.34118 1.14793 0.85478 0.79012 0.79050 0.77287 1.18372 1.20035 1.20758 1.16210 0.79504 0.84689 0.80969 1.90943 1.51008 1.18113 1.85772 1.42693 1.68627 1.17559 1.02186 1.18003 0.98994 0.89767 0.83903 1.67691 1.13679 1.06466 1.33240 1.23009 0.97870 1.00683 0.87153 1.22272 1.00245 0.95336 0.99595 1.21909 1.00776 0.95768 0.97240 1.19344 1.02124 0.86722 0.92800 1.86012 1.80850 1.22823 1.34737 1.23431 1.02192 0.99377 0.82636 0.88093 0.93168 0.93700 0.89918 0.89670 0.95302 0.98606 0.92373 0.73597 0.81461 0.80400 0.79908 0.91105 0.86107 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 10.24 71.98 0.74 -3.64 16 2 C 0.10 3.37 5.89 86.38 0.51 3.88 16 3 N -0.62 -28.92 2.46 -844.21 -2.07 -30.99 16 4 C 0.28 16.12 5.16 85.63 0.44 16.56 16 5 C -0.54 -32.97 9.39 25.60 0.24 -32.73 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 9 Si 0.97 46.75 29.54 68.60 2.03 48.78 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 13 C 0.69 33.60 8.24 179.06 1.48 35.08 16 14 O -0.58 -34.73 14.17 -3.97 -0.06 -34.79 16 15 N -0.66 -25.18 5.26 -321.77 -1.69 -26.87 16 16 C 0.33 11.89 7.45 132.98 0.99 12.88 16 17 N -0.50 -20.11 7.87 -192.59 -1.52 -21.62 16 18 C 0.07 2.02 11.17 84.63 0.95 2.97 16 19 C -0.15 -2.95 10.10 22.36 0.23 -2.72 16 20 C -0.13 -2.39 9.14 22.53 0.21 -2.18 16 21 C 0.04 1.06 6.72 22.70 0.15 1.21 16 22 O -0.33 -6.87 9.75 -93.39 -0.91 -7.78 16 23 C 0.02 0.17 9.83 113.37 1.11 1.29 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 28 H 0.09 2.35 6.36 -2.39 -0.02 2.33 16 29 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 30 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 31 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.42 13.12 5.78 -92.71 -0.54 12.58 16 33 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.18 1.81 8.06 -2.92 -0.02 1.79 16 35 H 0.18 1.64 6.44 -2.91 -0.02 1.62 16 36 H 0.07 0.47 7.70 -2.39 -0.02 0.46 16 37 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.49 7.70 -2.39 -0.02 0.47 16 Total: -1.00 -86.75 324.78 4.10 -82.65 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.54 Total: 14.62 kcal Atomic # 6 Polarization: 26.12 SS G_CDS: 7.50 Total: 33.62 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -5.00 Total: -137.10 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.97 Total: -42.57 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -86.75 4.10 -82.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548118615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.761 kcal (2) G-P(sol) polarization free energy of solvation -86.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds