Wall clock time and date at job start Tue Mar 31 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45209 * 109.47047 * 2 1 4 4 C 1.34723 * 116.99652 * 180.02562 * 3 2 1 5 5 O 1.21483 * 120.00531 * 359.97438 * 4 3 2 6 6 C 1.47703 * 119.99681 * 179.97438 * 4 3 2 7 7 C 1.39506 * 120.00730 * 179.97438 * 6 4 3 8 8 N 1.32010 * 119.97958 * 179.97438 * 7 6 4 9 9 C 1.32796 * 119.99264 * 0.02562 * 8 7 6 10 10 N 1.38373 * 119.99585 * 179.97438 * 9 8 7 11 11 C 1.46497 * 119.99693 * 5.00555 * 10 9 8 12 12 C 1.53008 * 109.46926 * 269.99690 * 11 10 9 13 13 C 1.46493 * 120.00072 * 184.99779 * 10 9 8 14 14 C 1.50706 * 109.47128 * 90.00306 * 13 10 9 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00436 * 179.72498 * 14 13 10 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99418 * 18 16 14 20 20 H 1.48493 * 109.47010 * 209.99942 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99638 * 18 16 14 22 22 C 1.39884 * 120.01252 * 0.25104 * 9 8 7 23 23 N 1.31458 * 120.01893 * 359.47715 * 22 9 8 24 24 H 1.09000 * 109.46871 * 60.00232 * 1 2 3 25 25 H 1.08997 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47153 * 300.00199 * 1 2 3 27 27 H 1.08995 * 109.47263 * 239.99640 * 2 1 3 28 28 H 1.09006 * 109.47143 * 119.99111 * 2 1 3 29 29 H 1.08002 * 120.00949 * 359.95802 * 7 6 4 30 30 H 1.08998 * 109.47569 * 29.99439 * 11 10 9 31 31 H 1.08997 * 109.47185 * 150.00110 * 11 10 9 32 32 H 1.08998 * 109.46792 * 300.00225 * 12 11 10 33 33 H 1.08997 * 109.46846 * 60.00212 * 12 11 10 34 34 H 1.08993 * 109.47111 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47786 * 330.00579 * 13 10 9 36 36 H 1.08998 * 109.47558 * 210.00442 * 13 10 9 37 37 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.99374 * 179.72246 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3497 1.5455 -0.0005 5 8 4.0897 0.5821 -0.0005 6 6 3.9142 2.9104 -0.0011 7 6 5.2972 3.0934 -0.0012 8 7 5.8012 4.3135 -0.0022 9 6 4.9916 5.3661 -0.0027 10 7 5.5198 6.6451 -0.0033 11 6 6.9676 6.8395 -0.1140 12 6 7.5878 6.8599 1.2845 13 6 4.6312 7.8046 0.1066 14 6 4.4409 8.1556 1.5598 15 1 4.9324 7.5729 2.3249 16 6 3.6436 9.2237 1.9124 17 7 3.0495 9.9365 0.9804 18 14 3.4083 9.6593 3.7136 19 1 4.4573 10.6241 4.1307 20 1 2.0688 10.2714 3.9039 21 1 3.5117 8.4285 4.5380 22 6 3.6049 5.1823 0.0031 23 7 3.1025 3.9675 -0.0012 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 5.9554 2.2371 0.0000 30 1 7.4008 6.0230 -0.6917 31 1 7.1697 7.7862 -0.6149 32 1 7.1546 7.6764 1.8622 33 1 7.3856 5.9132 1.7854 34 1 8.6650 7.0041 1.2022 35 1 3.6655 7.5659 -0.3389 36 1 5.0733 8.6521 -0.4170 37 1 2.4888 10.6883 1.2284 38 1 2.9467 6.0386 0.0072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548287606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:33 Heat of formation + Delta-G solvation = -36.218075 kcal Electronic energy + Delta-G solvation = -21423.562402 eV Core-core repulsion = 18073.521705 eV Total energy + Delta-G solvation = -3350.040697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84237 -39.77373 -36.99378 -36.34764 -33.82316 -32.83062 -31.83873 -31.30015 -29.59416 -27.31938 -24.90874 -24.37428 -23.20860 -22.54489 -21.64988 -20.48766 -18.11533 -17.26329 -16.83708 -16.57444 -16.45842 -16.43100 -14.82397 -14.68516 -14.59522 -14.07364 -13.92912 -13.84309 -13.14754 -12.99109 -12.87160 -12.67356 -12.22722 -11.93594 -11.64859 -11.57590 -11.44939 -11.16347 -11.11639 -10.95024 -10.85490 -10.55912 -10.53668 -10.46730 -10.20031 -9.99398 -9.37855 -8.75205 -8.62733 -7.20715 -6.28017 -4.37866 0.94488 1.60833 2.75497 2.75997 3.17479 3.25591 3.28203 3.43763 4.21924 4.27326 4.50239 4.66702 4.88476 4.88908 4.94104 5.04985 5.18013 5.20695 5.43965 5.52157 5.68392 5.71823 5.75637 5.88480 5.92110 5.96142 6.14001 6.32480 6.47408 6.55990 6.75202 6.78440 6.93588 7.29222 7.63981 7.69725 7.86665 7.88352 8.05399 8.30917 8.69218 9.30346 10.77043 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.004554 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.978598 B = 6146.990344 C = 7193.875148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.337 6.337 4 C 0.544 3.456 5 O -0.523 6.523 6 C -0.087 4.087 7 C 0.182 3.818 8 N -0.527 5.527 9 C 0.397 3.603 10 N -0.551 5.551 11 C 0.121 3.879 12 C -0.164 4.164 13 C 0.241 3.759 14 C -0.541 4.541 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.008 3.992 23 N -0.360 5.360 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.171 0.829 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.267 0.733 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -11.721 -2.919 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.253 6.253 4 C 0.389 3.611 5 O -0.412 6.412 6 C -0.224 4.224 7 C 0.018 3.982 8 N -0.251 5.251 9 C 0.152 3.848 10 N -0.254 5.254 11 C -0.003 4.003 12 C -0.222 4.222 13 C 0.122 3.878 14 C -0.579 4.579 15 H 0.082 0.918 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.169 4.169 23 N -0.075 5.075 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.188 0.812 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.016 -11.669 -2.965 12.083 hybrid contribution -0.141 0.252 1.091 1.129 sum 0.875 -11.418 -1.873 11.603 Atomic orbital electron populations 1.21787 0.92728 1.02568 1.03792 1.23012 0.95395 0.80709 1.02299 1.86710 1.23607 1.31261 1.83687 1.20505 0.80510 0.88323 0.71809 1.90799 1.60642 1.41685 1.48069 1.20248 0.91802 0.91015 1.19290 1.23278 0.92297 0.94725 0.87883 1.68244 1.37246 0.97809 1.21769 1.19819 0.90679 0.87079 0.87183 1.47488 1.07651 1.02652 1.67617 1.21411 0.79664 1.01507 0.97677 1.22122 0.99380 1.02972 0.97745 1.19693 0.89025 0.81071 0.98053 1.21441 1.30335 1.14511 0.91646 0.91779 1.24921 0.94975 0.95667 0.98017 1.69905 1.30924 1.19068 1.32781 0.86472 0.77698 0.78771 0.84468 1.20456 1.20890 1.19738 1.23509 0.92777 0.95318 1.05334 1.68172 1.37982 0.98196 1.03118 0.91400 0.90511 0.91369 0.91422 0.91409 0.81155 0.90758 0.90745 0.91068 0.92806 0.92779 0.93841 0.93591 0.92283 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.70 6.20 37.16 0.23 0.93 16 3 O -0.34 -5.34 10.05 -40.55 -0.41 -5.75 16 4 C 0.54 9.25 7.94 34.60 0.27 9.53 16 5 O -0.52 -9.10 16.12 -19.25 -0.31 -9.41 16 6 C -0.09 -1.56 6.74 -82.90 -0.56 -2.12 16 7 C 0.18 3.05 10.76 -17.00 -0.18 2.87 16 8 N -0.53 -9.50 9.30 -11.94 -0.11 -9.61 16 9 C 0.40 7.64 7.36 -155.01 -1.14 6.50 16 10 N -0.55 -10.61 2.55 -175.06 -0.45 -11.06 16 11 C 0.12 1.98 6.15 -4.04 -0.02 1.96 16 12 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 13 C 0.24 5.30 5.04 -5.19 -0.03 5.27 16 14 C -0.54 -13.31 8.92 -34.44 -0.31 -13.62 16 15 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.53 13.29 55.43 0.74 -22.79 16 18 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.01 0.16 10.42 -17.10 -0.18 -0.02 16 23 N -0.36 -6.94 10.26 -9.45 -0.10 -7.04 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.17 2.42 7.63 -52.49 -0.40 2.02 16 30 H 0.07 1.15 7.45 -51.93 -0.39 0.76 16 31 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 32 H 0.07 1.29 7.26 -51.93 -0.38 0.91 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.99 5.99 -51.93 -0.31 0.68 16 36 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 37 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.18 3.62 6.03 -52.48 -0.32 3.30 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -27.70 330.82 -7.02 -34.72 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.09 Total: 1.17 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -1.25 Total: 9.71 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.08 Total: -50.50 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.72 Total: -15.16 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.70 -7.02 -34.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548287606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.497 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds