Wall clock time and date at job start Tue Mar 31 2020 00:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45209 * 109.47047 * 2 1 4 4 C 1.34723 * 116.99652 * 180.02562 * 3 2 1 5 5 O 1.21483 * 120.00531 * 359.97438 * 4 3 2 6 6 C 1.47703 * 119.99681 * 179.97438 * 4 3 2 7 7 C 1.39506 * 120.00730 * 179.97438 * 6 4 3 8 8 N 1.32010 * 119.97958 * 179.97438 * 7 6 4 9 9 C 1.32796 * 119.99264 * 0.02562 * 8 7 6 10 10 N 1.38373 * 119.99585 * 179.97438 * 9 8 7 11 11 C 1.46497 * 119.99693 * 5.00555 * 10 9 8 12 12 C 1.53008 * 109.46926 * 269.99690 * 11 10 9 13 13 C 1.46493 * 120.00072 * 184.99779 * 10 9 8 14 14 C 1.50706 * 109.47128 * 90.00306 * 13 10 9 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00436 * 179.72498 * 14 13 10 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99418 * 18 16 14 20 20 H 1.48493 * 109.47010 * 209.99942 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99638 * 18 16 14 22 22 C 1.39884 * 120.01252 * 0.25104 * 9 8 7 23 23 N 1.31458 * 120.01893 * 359.47715 * 22 9 8 24 24 H 1.09000 * 109.46871 * 60.00232 * 1 2 3 25 25 H 1.08997 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47153 * 300.00199 * 1 2 3 27 27 H 1.08995 * 109.47263 * 239.99640 * 2 1 3 28 28 H 1.09006 * 109.47143 * 119.99111 * 2 1 3 29 29 H 1.08002 * 120.00949 * 359.95802 * 7 6 4 30 30 H 1.08998 * 109.47569 * 29.99439 * 11 10 9 31 31 H 1.08997 * 109.47185 * 150.00110 * 11 10 9 32 32 H 1.08998 * 109.46792 * 300.00225 * 12 11 10 33 33 H 1.08997 * 109.46846 * 60.00212 * 12 11 10 34 34 H 1.08993 * 109.47111 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47786 * 330.00579 * 13 10 9 36 36 H 1.08998 * 109.47558 * 210.00442 * 13 10 9 37 37 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.99374 * 179.72246 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3497 1.5455 -0.0005 5 8 4.0897 0.5821 -0.0005 6 6 3.9142 2.9104 -0.0011 7 6 5.2972 3.0934 -0.0012 8 7 5.8012 4.3135 -0.0022 9 6 4.9916 5.3661 -0.0027 10 7 5.5198 6.6451 -0.0033 11 6 6.9676 6.8395 -0.1140 12 6 7.5878 6.8599 1.2845 13 6 4.6312 7.8046 0.1066 14 6 4.4409 8.1556 1.5598 15 1 4.9324 7.5729 2.3249 16 6 3.6436 9.2237 1.9124 17 7 3.0495 9.9365 0.9804 18 14 3.4083 9.6593 3.7136 19 1 4.4573 10.6241 4.1307 20 1 2.0688 10.2714 3.9039 21 1 3.5117 8.4285 4.5380 22 6 3.6049 5.1823 0.0031 23 7 3.1025 3.9675 -0.0012 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 5.9554 2.2371 0.0000 30 1 7.4008 6.0230 -0.6917 31 1 7.1697 7.7862 -0.6149 32 1 7.1546 7.6764 1.8622 33 1 7.3856 5.9132 1.7854 34 1 8.6650 7.0041 1.2022 35 1 3.6655 7.5659 -0.3389 36 1 5.0733 8.6521 -0.4170 37 1 2.4888 10.6883 1.2284 38 1 2.9467 6.0386 0.0072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548287606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:32 Heat of formation + Delta-G solvation = -50.876576 kcal Electronic energy + Delta-G solvation = -21424.198043 eV Core-core repulsion = 18073.521705 eV Total energy + Delta-G solvation = -3350.676337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.26181 -41.08167 -38.46894 -37.61300 -35.37831 -34.62913 -33.01453 -32.41582 -31.12262 -28.99699 -26.33188 -25.88188 -24.51345 -23.94128 -22.90566 -21.89530 -19.46875 -18.78134 -18.56784 -18.10625 -17.77668 -17.61837 -16.57369 -16.08922 -16.04818 -15.50225 -15.17856 -15.12467 -14.54451 -14.44839 -14.16734 -13.78245 -13.58221 -13.31592 -13.02788 -12.91833 -12.83079 -12.61234 -12.57756 -12.47187 -12.38341 -12.20470 -11.88129 -11.78828 -11.64397 -11.49577 -11.00343 -10.63375 -10.14844 -8.76376 -8.18513 -6.36723 -0.47257 0.13940 1.37634 1.39428 1.43309 1.50863 1.56782 1.94665 2.39294 2.79292 3.07809 3.13134 3.30497 3.42914 3.90711 4.04459 4.05733 4.11088 4.20469 4.36949 4.44652 4.55496 4.61242 4.76390 4.84831 4.93806 4.94529 5.07528 5.11142 5.13291 5.20565 5.39420 5.44372 5.62059 5.82342 5.98967 6.23181 6.39221 6.62498 6.75706 6.88943 7.34262 8.82220 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.004554 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.978598 B = 6146.990344 C = 7193.875148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.546 3.454 5 O -0.527 6.527 6 C -0.092 4.092 7 C 0.190 3.810 8 N -0.523 5.523 9 C 0.390 3.610 10 N -0.557 5.557 11 C 0.117 3.883 12 C -0.155 4.155 13 C 0.255 3.745 14 C -0.542 4.542 15 H 0.054 0.946 16 C 0.026 3.974 17 N -0.917 5.917 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.276 1.276 22 C -0.008 4.008 23 N -0.370 5.370 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.201 0.799 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.037 0.963 37 H 0.269 0.731 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -13.140 -2.656 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.391 3.609 5 O -0.417 6.417 6 C -0.230 4.230 7 C 0.026 3.974 8 N -0.246 5.246 9 C 0.146 3.854 10 N -0.261 5.261 11 C -0.005 4.005 12 C -0.213 4.213 13 C 0.134 3.866 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.175 4.175 17 N -0.556 5.556 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.184 4.184 23 N -0.085 5.085 24 H 0.084 0.916 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.218 0.782 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.601 -13.091 -2.702 13.462 hybrid contribution -0.342 0.527 0.981 1.165 sum 1.259 -12.564 -1.721 12.744 Atomic orbital electron populations 1.21827 0.90665 1.04424 1.03428 1.23404 0.97033 0.78804 1.03033 1.86697 1.22784 1.33943 1.83224 1.20313 0.81046 0.87756 0.71765 1.90789 1.60889 1.41625 1.48428 1.20590 0.92432 0.91241 1.18703 1.23726 0.92346 0.94994 0.86361 1.68298 1.36894 0.97889 1.21506 1.19830 0.90660 0.87424 0.87497 1.47362 1.08454 1.01972 1.68273 1.21615 0.77986 1.02654 0.98228 1.22029 1.01200 1.01188 0.96864 1.19302 0.89073 0.81762 0.96441 1.21621 1.29679 1.14064 0.92705 0.92785 1.25556 0.94972 0.95824 1.01149 1.69984 1.31766 1.19643 1.34237 0.85640 0.77696 0.78286 0.80583 1.19762 1.20692 1.20125 1.23342 0.93030 0.95253 1.06807 1.68122 1.38730 0.98434 1.03197 0.91638 0.87502 0.91842 0.90567 0.90793 0.78228 0.89335 0.89708 0.93523 0.94026 0.89610 0.94939 0.94523 0.92227 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.29 71.98 0.74 -1.60 16 2 C 0.05 1.09 6.20 71.98 0.45 1.54 16 3 O -0.35 -10.74 10.05 -56.33 -0.57 -11.31 16 4 C 0.55 17.87 7.94 70.32 0.56 18.43 16 5 O -0.53 -17.36 16.12 19.89 0.32 -17.04 16 6 C -0.09 -3.22 6.74 41.73 0.28 -2.94 16 7 C 0.19 6.03 10.76 84.97 0.91 6.94 16 8 N -0.52 -18.13 9.30 -191.69 -1.78 -19.91 16 9 C 0.39 14.91 7.36 133.34 0.98 15.89 16 10 N -0.56 -21.42 2.55 -707.76 -1.81 -23.22 16 11 C 0.12 3.72 6.15 86.38 0.53 4.25 16 12 C -0.15 -4.77 10.24 71.98 0.74 -4.03 16 13 C 0.25 11.42 5.04 85.64 0.43 11.86 16 14 C -0.54 -27.01 8.92 25.60 0.23 -26.78 16 15 H 0.05 2.76 7.42 -2.91 -0.02 2.74 16 16 C 0.03 1.32 5.46 84.65 0.46 1.78 16 17 N -0.92 -49.08 13.29 21.45 0.28 -48.79 16 18 Si 0.95 41.32 29.54 68.60 2.03 43.34 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 C -0.01 -0.32 10.42 85.15 0.89 0.57 16 23 N -0.37 -14.25 10.26 -183.82 -1.89 -16.14 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.20 5.11 7.63 -2.91 -0.02 5.09 16 30 H 0.09 2.56 7.45 -2.39 -0.02 2.54 16 31 H 0.08 2.49 7.89 -2.39 -0.02 2.48 16 32 H 0.05 1.66 7.26 -2.39 -0.02 1.64 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.03 1.54 5.99 -2.39 -0.01 1.52 16 36 H 0.04 1.71 7.89 -2.39 -0.02 1.69 16 37 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.17 7.06 6.03 -2.91 -0.02 7.05 16 Total: -1.00 -58.21 330.82 4.85 -53.36 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.07 Total: 13.80 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 7.20 Total: 25.91 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -5.19 Total: -108.07 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.25 Total: -28.34 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -58.21 4.85 -53.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548287606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.480 kcal (2) G-P(sol) polarization free energy of solvation -58.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds