Wall clock time and date at job start Tue Mar 31 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47030 * 2 1 4 4 C 1.46504 * 120.00174 * 269.99660 * 3 2 1 5 5 C 1.50700 * 109.47279 * 270.00629 * 4 3 2 6 6 H 1.08000 * 119.99774 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99717 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00137 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99642 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47298 * 90.00091 * 9 7 5 11 11 H 1.48504 * 109.46997 * 209.99667 * 9 7 5 12 12 H 1.48497 * 109.47289 * 329.99613 * 9 7 5 13 13 C 1.38429 * 120.00259 * 90.00441 * 3 2 1 14 14 N 1.32601 * 119.13172 * 359.97055 * 13 3 2 15 15 C 1.32106 * 120.96321 * 180.02562 * 14 13 3 16 16 C 1.50703 * 120.37681 * 179.97438 * 15 14 13 17 17 C 1.38828 * 119.24341 * 359.75051 * 15 14 13 18 18 C 1.39493 * 118.42269 * 0.49404 * 17 15 14 19 19 C 1.48382 * 120.51108 * 179.78133 * 18 17 15 20 20 O 1.21393 * 119.99719 * 359.71812 * 19 18 17 21 21 O 1.34638 * 119.99936 * 179.97438 * 19 18 17 22 22 C 1.45201 * 116.99819 * 179.72711 * 21 19 18 23 23 N 1.32251 * 119.14158 * 179.97438 * 13 3 2 24 24 H 1.09002 * 109.46847 * 300.00172 * 1 2 3 25 25 H 1.09004 * 109.46974 * 59.99839 * 1 2 3 26 26 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46847 * 239.99828 * 2 1 3 28 28 H 1.09004 * 109.46974 * 120.00160 * 2 1 3 29 29 H 1.09000 * 109.46857 * 30.00488 * 4 3 2 30 30 H 1.08996 * 109.47260 * 149.99866 * 4 3 2 31 31 H 0.97001 * 119.99508 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47232 * 89.99869 * 16 15 14 33 33 H 1.09000 * 109.47235 * 210.00241 * 16 15 14 34 34 H 1.09005 * 109.47001 * 329.99807 * 16 15 14 35 35 H 1.08001 * 120.78574 * 180.25261 * 17 15 14 36 36 H 1.08997 * 109.47282 * 59.99663 * 22 21 19 37 37 H 1.09007 * 109.47113 * 179.97438 * 22 21 19 38 38 H 1.09003 * 109.47240 * 299.99654 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1266 -3.6175 9 14 5.9139 2.0974 -3.4164 10 1 5.9777 0.8767 -4.2597 11 1 6.3929 3.2651 -4.1989 12 1 6.7737 1.9174 -2.2191 13 6 2.2492 2.0337 1.1988 14 7 2.0219 1.3925 2.3370 15 6 2.2294 1.9807 3.5016 16 6 1.9662 1.2397 4.7872 17 6 2.6971 3.2876 3.5276 18 6 2.9214 3.9367 2.3134 19 6 3.4164 5.3353 2.2872 20 8 3.6244 5.9251 3.3276 21 8 3.6299 5.9518 1.1094 22 6 4.1085 7.3218 1.1598 23 7 2.6904 3.2803 1.1789 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6758 3.5177 -4.4431 32 1 2.8714 0.7181 5.0978 33 1 1.6715 1.9483 5.5612 34 1 1.1652 0.5167 4.6324 35 1 2.8792 3.7910 4.4656 36 1 5.0632 7.3540 1.6846 37 1 4.2390 7.6986 0.1453 38 1 3.3829 7.9410 1.6872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555906895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:41 Heat of formation + Delta-G solvation = -22.738020 kcal Electronic energy + Delta-G solvation = -22008.179789 eV Core-core repulsion = 18658.723631 eV Total energy + Delta-G solvation = -3349.456158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83935 -39.78402 -36.67923 -36.20433 -34.08423 -32.80186 -31.76358 -30.08450 -28.24235 -27.76037 -26.78721 -24.61829 -23.32247 -22.90115 -20.81245 -20.11515 -18.14181 -17.04351 -16.48634 -16.40223 -16.20692 -15.74095 -14.99647 -14.88304 -14.62185 -13.93155 -13.65391 -13.28352 -13.20438 -13.14517 -12.80931 -12.43303 -12.28223 -12.00841 -11.92599 -11.68516 -11.20588 -10.93215 -10.72601 -10.63625 -10.60393 -10.50527 -10.43724 -10.20768 -10.11383 -9.92001 -9.26330 -8.66929 -8.41284 -7.13021 -6.02960 -4.08383 0.85486 1.59964 2.74068 2.75183 3.29524 3.35946 3.38032 3.46246 4.32463 4.34633 4.44448 4.71070 4.98931 5.24005 5.30141 5.31535 5.32905 5.47833 5.51525 5.59152 5.62610 5.67134 5.77539 5.84456 5.93730 5.97672 6.21977 6.32369 6.41759 6.55225 6.65047 6.99010 7.28905 7.47401 7.65866 7.88247 7.93092 8.21941 8.25489 8.78488 8.98373 9.55768 11.03541 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.007598 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.769394 B = 3684.159887 C = 5464.064375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 N -0.555 5.555 4 C 0.254 3.746 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.065 3.935 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.574 3.426 14 N -0.561 5.561 15 C 0.214 3.786 16 C -0.100 4.100 17 C -0.258 4.258 18 C 0.188 3.812 19 C 0.529 3.471 20 O -0.503 6.503 21 O -0.320 6.320 22 C 0.034 3.966 23 N -0.504 5.504 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.263 0.737 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 -0.012 12.340 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.003 3.997 3 N -0.266 5.266 4 C 0.135 3.865 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.137 4.137 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.218 3.782 14 N -0.287 5.287 15 C 0.062 3.938 16 C -0.157 4.157 17 C -0.287 4.287 18 C 0.037 3.963 19 C 0.371 3.629 20 O -0.391 6.391 21 O -0.234 6.234 22 C -0.060 4.060 23 N -0.229 5.229 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.345 -0.250 11.268 11.757 hybrid contribution 1.319 0.598 0.305 1.480 sum -2.027 0.348 11.572 11.754 Atomic orbital electron populations 1.22137 0.96818 1.01225 1.01946 1.21322 0.93381 0.82225 1.02782 1.47057 1.63778 1.12757 1.02963 1.19437 0.96365 0.93848 0.76853 1.21390 0.96732 1.31843 1.06268 0.92659 1.24871 0.97637 0.94884 0.96336 1.69928 1.35569 1.33351 1.14301 0.86541 0.84896 0.77668 0.78558 1.20685 1.21081 1.20048 1.19248 0.87551 0.84902 0.86471 1.67705 1.24671 1.38662 0.97619 1.21314 0.88770 0.90194 0.93479 1.20712 1.03245 1.00232 0.91523 1.22054 1.10450 0.97352 0.98808 1.20008 0.95412 0.91179 0.89678 1.20938 0.74007 0.86028 0.81881 1.90790 1.48483 1.65752 1.34033 1.86820 1.75956 1.28595 1.32015 1.23344 0.99362 0.79176 1.04114 1.68076 1.16947 1.08959 1.28870 0.92924 0.92601 0.92257 0.90180 0.90604 0.94730 0.92958 0.92752 0.89898 0.90294 0.90122 0.83545 0.91938 0.87707 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 37.16 0.38 -2.10 16 2 C 0.13 2.27 6.13 -4.04 -0.02 2.24 16 3 N -0.55 -12.18 2.56 -177.44 -0.45 -12.63 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 5 C -0.52 -14.59 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.57 12.37 8.17 -322.95 -2.64 9.73 16 14 N -0.56 -10.36 9.02 -10.16 -0.09 -10.45 16 15 C 0.21 3.31 6.83 -82.25 -0.56 2.75 16 16 C -0.10 -1.02 10.21 36.01 0.37 -0.65 16 17 C -0.26 -4.18 9.40 -38.90 -0.37 -4.55 16 18 C 0.19 3.66 6.79 -82.68 -0.56 3.10 16 19 C 0.53 9.87 7.97 34.91 0.28 10.15 16 20 O -0.50 -9.16 16.21 -19.18 -0.31 -9.47 16 21 O -0.32 -6.00 10.42 -40.33 -0.42 -6.42 16 22 C 0.03 0.45 10.56 101.05 1.07 1.52 16 23 N -0.50 -11.34 8.92 -10.51 -0.09 -11.44 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 28 H 0.08 1.29 7.33 -51.93 -0.38 0.91 16 29 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.48 7.33 -51.93 -0.38 1.10 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.15 2.01 7.73 -52.49 -0.41 1.60 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -32.23 335.45 -8.46 -40.69 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.35 Total: -2.32 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -2.51 Total: 15.50 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.10 Total: -59.73 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.73 Total: -15.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.23 -8.46 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555906895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.949 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds