Wall clock time and date at job start Tue Mar 31 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47030 * 2 1 4 4 C 1.46504 * 120.00174 * 269.99660 * 3 2 1 5 5 C 1.50700 * 109.47279 * 270.00629 * 4 3 2 6 6 H 1.08000 * 119.99774 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99717 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00137 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99642 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47298 * 90.00091 * 9 7 5 11 11 H 1.48504 * 109.46997 * 209.99667 * 9 7 5 12 12 H 1.48497 * 109.47289 * 329.99613 * 9 7 5 13 13 C 1.38429 * 120.00259 * 90.00441 * 3 2 1 14 14 N 1.32601 * 119.13172 * 359.97055 * 13 3 2 15 15 C 1.32106 * 120.96321 * 180.02562 * 14 13 3 16 16 C 1.50703 * 120.37681 * 179.97438 * 15 14 13 17 17 C 1.38828 * 119.24341 * 359.75051 * 15 14 13 18 18 C 1.39493 * 118.42269 * 0.49404 * 17 15 14 19 19 C 1.48382 * 120.51108 * 179.78133 * 18 17 15 20 20 O 1.21393 * 119.99719 * 359.71812 * 19 18 17 21 21 O 1.34638 * 119.99936 * 179.97438 * 19 18 17 22 22 C 1.45201 * 116.99819 * 179.72711 * 21 19 18 23 23 N 1.32251 * 119.14158 * 179.97438 * 13 3 2 24 24 H 1.09002 * 109.46847 * 300.00172 * 1 2 3 25 25 H 1.09004 * 109.46974 * 59.99839 * 1 2 3 26 26 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46847 * 239.99828 * 2 1 3 28 28 H 1.09004 * 109.46974 * 120.00160 * 2 1 3 29 29 H 1.09000 * 109.46857 * 30.00488 * 4 3 2 30 30 H 1.08996 * 109.47260 * 149.99866 * 4 3 2 31 31 H 0.97001 * 119.99508 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47232 * 89.99869 * 16 15 14 33 33 H 1.09000 * 109.47235 * 210.00241 * 16 15 14 34 34 H 1.09005 * 109.47001 * 329.99807 * 16 15 14 35 35 H 1.08001 * 120.78574 * 180.25261 * 17 15 14 36 36 H 1.08997 * 109.47282 * 59.99663 * 22 21 19 37 37 H 1.09007 * 109.47113 * 179.97438 * 22 21 19 38 38 H 1.09003 * 109.47240 * 299.99654 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1266 -3.6175 9 14 5.9139 2.0974 -3.4164 10 1 5.9777 0.8767 -4.2597 11 1 6.3929 3.2651 -4.1989 12 1 6.7737 1.9174 -2.2191 13 6 2.2492 2.0337 1.1988 14 7 2.0219 1.3925 2.3370 15 6 2.2294 1.9807 3.5016 16 6 1.9662 1.2397 4.7872 17 6 2.6971 3.2876 3.5276 18 6 2.9214 3.9367 2.3134 19 6 3.4164 5.3353 2.2872 20 8 3.6244 5.9251 3.3276 21 8 3.6299 5.9518 1.1094 22 6 4.1085 7.3218 1.1598 23 7 2.6904 3.2803 1.1789 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6758 3.5177 -4.4431 32 1 2.8714 0.7181 5.0978 33 1 1.6715 1.9483 5.5612 34 1 1.1652 0.5167 4.6324 35 1 2.8792 3.7910 4.4656 36 1 5.0632 7.3540 1.6846 37 1 4.2390 7.6986 0.1453 38 1 3.3829 7.9410 1.6872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555906895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:40 Heat of formation + Delta-G solvation = -40.341428 kcal Electronic energy + Delta-G solvation = -22008.943130 eV Core-core repulsion = 18658.723631 eV Total energy + Delta-G solvation = -3350.219499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26450 -41.18914 -38.22581 -37.61571 -35.45304 -34.86786 -33.13631 -31.64768 -29.48034 -28.90765 -28.63737 -25.91712 -25.19965 -24.33831 -22.19536 -21.64740 -19.56766 -18.70233 -18.34249 -17.81621 -17.58613 -17.30123 -16.56285 -16.34578 -16.26899 -15.50121 -14.92666 -14.73731 -14.44913 -14.39833 -14.20055 -13.87950 -13.54916 -13.27576 -13.09268 -13.08211 -13.03067 -12.71389 -12.51752 -12.19859 -12.12863 -11.88497 -11.87155 -11.81150 -11.77966 -11.55664 -10.91673 -10.60304 -10.11247 -8.78632 -8.13674 -6.30917 -0.57505 0.23801 1.30899 1.36681 1.38395 1.45534 1.48508 1.91102 2.39906 2.89176 3.02155 3.12071 3.41687 3.66330 4.01050 4.15271 4.19947 4.28922 4.32472 4.43207 4.45275 4.60584 4.64206 4.80868 4.85277 4.93117 4.97917 5.04306 5.07824 5.11136 5.25758 5.37029 5.45563 5.67554 5.89628 6.02728 6.13257 6.47552 6.63164 6.77981 7.30124 7.41865 8.88712 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.007598 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.769394 B = 3684.159887 C = 5464.064375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 N -0.571 5.571 4 C 0.278 3.722 5 C -0.534 4.534 6 H 0.043 0.957 7 C 0.017 3.983 8 N -0.923 5.923 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.556 3.444 14 N -0.559 5.559 15 C 0.215 3.785 16 C -0.094 4.094 17 C -0.239 4.239 18 C 0.160 3.840 19 C 0.529 3.471 20 O -0.503 6.503 21 O -0.350 6.350 22 C 0.026 3.974 23 N -0.554 5.554 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.178 0.822 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 -0.829 14.459 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.003 3.997 3 N -0.284 5.284 4 C 0.157 3.843 5 C -0.573 4.573 6 H 0.062 0.938 7 C -0.183 4.183 8 N -0.562 5.562 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.201 3.799 14 N -0.284 5.284 15 C 0.064 3.936 16 C -0.151 4.151 17 C -0.266 4.266 18 C 0.012 3.988 19 C 0.372 3.628 20 O -0.391 6.391 21 O -0.265 6.265 22 C -0.067 4.067 23 N -0.280 5.280 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.195 0.805 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.928 -1.054 13.434 13.790 hybrid contribution 1.174 0.909 -0.196 1.498 sum -1.754 -0.145 13.238 13.355 Atomic orbital electron populations 1.22027 0.94782 1.03068 1.00931 1.21487 0.94995 0.80337 1.02881 1.46893 1.65417 1.13955 1.02116 1.18797 0.94991 0.92103 0.78444 1.21577 0.97669 1.31710 1.06363 0.93838 1.25673 1.01686 0.94540 0.96356 1.70034 1.37406 1.34073 1.14721 0.85547 0.79789 0.78176 0.78034 1.19200 1.20348 1.20367 1.19394 0.88303 0.85050 0.87175 1.67813 1.24571 1.38443 0.97610 1.22328 0.86642 0.90270 0.94377 1.20914 1.04479 1.00751 0.88989 1.22492 1.07919 0.97458 0.98723 1.20417 0.96339 0.91772 0.90256 1.20907 0.74006 0.85991 0.81937 1.90764 1.48797 1.65778 1.33771 1.86790 1.76150 1.31030 1.32485 1.23685 1.00183 0.77059 1.05757 1.67970 1.19088 1.10023 1.30913 0.93378 0.94062 0.88863 0.90873 0.89533 0.96182 0.96482 0.92455 0.87906 0.87256 0.89257 0.80505 0.90856 0.86029 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 10.24 71.98 0.74 -3.74 16 2 C 0.13 4.51 6.13 86.38 0.53 5.04 16 3 N -0.57 -25.93 2.56 -715.29 -1.83 -27.76 16 4 C 0.28 15.01 5.16 85.63 0.44 15.45 16 5 C -0.53 -30.83 9.39 25.60 0.24 -30.59 16 6 H 0.04 2.55 7.81 -2.91 -0.02 2.53 16 7 C 0.02 0.97 5.46 84.66 0.46 1.43 16 8 N -0.92 -55.02 13.29 21.45 0.28 -54.74 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.56 24.47 8.17 261.54 2.14 26.61 16 14 N -0.56 -20.09 9.02 -186.05 -1.68 -21.77 16 15 C 0.22 6.14 6.83 42.66 0.29 6.43 16 16 C -0.09 -1.52 10.21 71.24 0.73 -0.79 16 17 C -0.24 -7.25 9.40 22.71 0.21 -7.04 16 18 C 0.16 6.25 6.79 41.96 0.28 6.54 16 19 C 0.53 19.84 7.97 70.52 0.56 20.40 16 20 O -0.50 -17.82 16.21 20.18 0.33 -17.49 16 21 O -0.35 -13.44 10.42 -55.47 -0.58 -14.02 16 22 C 0.03 0.68 10.56 113.37 1.20 1.88 16 23 N -0.55 -25.81 8.92 -187.16 -1.67 -27.48 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 28 H 0.09 2.88 7.33 -2.39 -0.02 2.87 16 29 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 30 H 0.02 1.03 7.33 -2.39 -0.02 1.01 16 31 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.16 8.10 -2.39 -0.02 1.15 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.18 4.22 7.73 -2.91 -0.02 4.20 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -72.47 335.45 5.77 -66.71 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.06 Total: 7.81 kcal Atomic # 6 Polarization: 33.79 SS G_CDS: 7.83 Total: 41.61 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -4.89 Total: -131.75 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.25 Total: -31.51 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -72.47 5.77 -66.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555906895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.366 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds