Wall clock time and date at job start Tue Mar 31 2020 01:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47052 * 2 1 4 4 C 1.34732 * 117.00097 * 180.02562 * 3 2 1 5 5 O 1.21476 * 120.00034 * 0.02562 * 4 3 2 6 6 C 1.47699 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.39491 * 120.00721 * 180.02562 * 6 4 3 8 8 N 1.32021 * 119.98077 * 179.70093 * 7 6 4 9 9 C 1.32798 * 119.98667 * 0.54022 * 8 7 6 10 10 N 1.38367 * 119.99140 * 179.72556 * 9 8 7 11 11 C 1.46503 * 119.99963 * 9.78769 * 10 9 8 12 12 C 1.46499 * 119.99982 * 189.79030 * 10 9 8 13 13 H 1.08993 * 109.47445 * 6.01142 * 12 10 9 14 14 C 1.52995 * 109.46821 * 246.00829 * 12 10 9 15 15 C 1.50699 * 109.47217 * 126.01096 * 12 10 9 16 16 H 1.08002 * 120.00200 * 5.17027 * 15 12 10 17 17 C 1.37874 * 120.00074 * 185.16713 * 15 12 10 18 18 N 1.31512 * 119.99957 * 2.07347 * 17 15 12 19 19 Si 1.86800 * 120.00168 * 182.07036 * 17 15 12 20 20 H 1.48504 * 109.47203 * 94.98799 * 19 17 15 21 21 H 1.48498 * 109.47408 * 214.98837 * 19 17 15 22 22 H 1.48501 * 109.47152 * 334.98890 * 19 17 15 23 23 C 1.39883 * 120.01377 * 359.46002 * 9 8 7 24 24 N 1.31454 * 120.02180 * 0.26416 * 23 9 8 25 25 H 1.08993 * 109.47044 * 59.99622 * 1 2 3 26 26 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46905 * 299.99634 * 1 2 3 28 28 H 1.08997 * 109.46905 * 240.00366 * 2 1 3 29 29 H 1.08997 * 109.47753 * 120.00461 * 2 1 3 30 30 H 1.07999 * 120.01379 * 359.97069 * 7 6 4 31 31 H 1.09000 * 109.47164 * 270.00041 * 11 10 9 32 32 H 1.09000 * 109.47056 * 30.00087 * 11 10 9 33 33 H 1.08997 * 109.47182 * 149.99477 * 11 10 9 34 34 H 1.09001 * 109.47866 * 301.22997 * 14 12 10 35 35 H 1.09007 * 109.47451 * 61.23537 * 14 12 10 36 36 H 1.09004 * 109.47218 * 181.23341 * 14 12 10 37 37 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 38 38 H 1.07999 * 119.98456 * 180.24915 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 -0.0005 5 8 4.0897 0.5822 -0.0015 6 6 3.9142 2.9104 0.0000 7 6 5.2970 3.0934 -0.0011 8 7 5.8011 4.3136 -0.0066 9 6 4.9914 5.3662 -0.0002 10 7 5.5196 6.6451 -0.0002 11 6 6.9537 6.8453 -0.2228 12 6 4.6447 7.7989 0.2224 13 1 3.6424 7.4519 0.4733 14 6 4.5872 8.6480 -1.0489 15 6 5.1874 8.6292 1.3569 16 1 6.1359 8.3752 1.8065 17 6 4.4729 9.7133 1.8210 18 7 3.2990 9.9985 1.3011 19 14 5.1722 10.7769 3.1881 20 1 5.8765 11.9430 2.5971 21 1 4.0675 11.2547 4.0579 22 1 6.1286 9.9785 3.9964 23 6 3.6047 5.1823 0.0009 24 7 3.1023 3.9675 0.0009 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9553 2.2372 -0.0019 31 1 7.4760 6.8261 0.7337 32 1 7.3367 6.0498 -0.8620 33 1 7.1153 7.8089 -0.7059 34 1 5.5925 8.9770 -1.3121 35 1 4.1742 8.0540 -1.8643 36 1 3.9537 9.5182 -0.8764 37 1 2.7966 10.7614 1.6273 38 1 2.9467 6.0386 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562356112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:25 Heat of formation + Delta-G solvation = -30.461099 kcal Electronic energy + Delta-G solvation = -21379.853419 eV Core-core repulsion = 18030.062363 eV Total energy + Delta-G solvation = -3349.791056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88628 -39.80546 -37.08555 -36.38567 -34.05266 -32.94186 -31.77800 -30.67047 -29.45415 -26.77844 -25.45565 -24.59863 -23.52201 -22.87864 -21.39236 -20.17069 -18.16574 -17.40672 -16.81059 -16.56111 -16.47943 -16.22539 -14.91042 -14.82813 -14.64840 -14.05919 -13.91936 -13.65429 -13.12615 -12.99499 -12.81906 -12.72088 -11.95882 -11.82392 -11.67549 -11.60013 -11.26572 -11.16138 -11.04875 -10.94025 -10.83753 -10.66712 -10.52688 -10.49093 -10.30559 -9.74657 -9.27211 -8.79257 -8.64649 -7.17428 -6.31844 -4.41190 0.90043 1.54503 2.71899 2.72937 3.14732 3.23133 3.24934 3.43169 4.16556 4.22989 4.44388 4.66386 4.83131 4.86449 4.91701 5.01328 5.14006 5.18746 5.43782 5.62439 5.69749 5.77322 5.87127 5.90281 6.03498 6.26420 6.39472 6.44657 6.53501 6.56888 6.68766 6.97006 7.17738 7.42833 7.61967 7.65396 7.79936 7.99423 8.09210 8.25831 8.64026 9.26891 10.73841 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.003863 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.914250 B = 7245.952265 C = 7773.956853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.337 6.337 4 C 0.544 3.456 5 O -0.522 6.522 6 C -0.088 4.088 7 C 0.186 3.814 8 N -0.527 5.527 9 C 0.392 3.608 10 N -0.547 5.547 11 C 0.099 3.901 12 C 0.258 3.742 13 H 0.062 0.938 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.070 3.930 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.003 4.003 24 N -0.356 5.356 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.173 0.827 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.019 0.981 36 H 0.089 0.911 37 H 0.267 0.733 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -11.550 -3.749 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.253 6.253 4 C 0.389 3.611 5 O -0.411 6.411 6 C -0.225 4.225 7 C 0.022 3.978 8 N -0.251 5.251 9 C 0.147 3.853 10 N -0.249 5.249 11 C -0.045 4.045 12 C 0.158 3.842 13 H 0.079 0.921 14 C -0.207 4.207 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.729 3.271 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.181 4.181 24 N -0.071 5.071 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.190 0.810 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.994 -11.512 -3.740 12.145 hybrid contribution 0.386 0.538 0.824 1.057 sum -0.607 -10.973 -2.916 11.370 Atomic orbital electron populations 1.21786 0.92714 1.02593 1.03779 1.23013 0.95398 0.80676 1.02330 1.86705 1.23585 1.31305 1.83704 1.20478 0.80527 0.88281 0.71848 1.90801 1.60636 1.41654 1.48004 1.20238 0.91792 0.90982 1.19511 1.23312 0.92319 0.94744 0.87442 1.68283 1.37217 0.97823 1.21735 1.19901 0.90686 0.87267 0.87434 1.47544 1.09413 1.02395 1.65545 1.21540 0.80413 1.01583 1.00944 1.19313 0.90081 0.80594 0.94225 0.92056 1.22112 1.00835 1.01695 0.96030 1.21233 1.06996 1.12157 1.16953 0.91697 1.24882 0.94585 0.97197 0.96768 1.69883 1.11862 1.28342 1.42104 0.86409 0.78809 0.80375 0.81481 1.20445 1.20906 1.19757 1.23456 0.92668 0.95375 1.06578 1.68144 1.38008 0.98156 1.02823 0.91404 0.90490 0.91374 0.91407 0.91385 0.81040 0.92893 0.91848 0.90795 0.94424 0.96195 0.89231 0.92272 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.68 6.20 37.16 0.23 0.91 16 3 O -0.34 -5.22 10.05 -40.58 -0.41 -5.63 16 4 C 0.54 9.08 7.94 34.60 0.27 9.35 16 5 O -0.52 -8.95 16.12 -19.25 -0.31 -9.26 16 6 C -0.09 -1.56 6.74 -82.90 -0.56 -2.12 16 7 C 0.19 3.10 10.76 -17.00 -0.18 2.91 16 8 N -0.53 -9.57 9.38 -11.94 -0.11 -9.68 16 9 C 0.39 7.54 7.33 -155.01 -1.14 6.40 16 10 N -0.55 -10.74 2.85 -175.27 -0.50 -11.24 16 11 C 0.10 1.69 9.34 59.85 0.56 2.25 16 12 C 0.26 5.65 2.37 -69.09 -0.16 5.49 16 13 H 0.06 1.43 5.49 -51.93 -0.29 1.15 16 14 C -0.15 -3.07 9.13 37.16 0.34 -2.73 16 15 C -0.54 -13.06 8.29 -34.44 -0.29 -13.34 16 16 H 0.06 1.60 7.20 -52.49 -0.38 1.22 16 17 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.88 -22.66 11.80 55.43 0.65 -22.01 16 19 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.00 -0.06 10.39 -17.10 -0.18 -0.24 16 24 N -0.36 -6.69 10.26 -9.46 -0.10 -6.79 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.17 2.41 7.63 -52.49 -0.40 2.01 16 31 H 0.05 0.91 7.96 -51.93 -0.41 0.50 16 32 H 0.06 0.99 7.55 -51.93 -0.39 0.60 16 33 H 0.07 1.22 6.74 -51.93 -0.35 0.87 16 34 H 0.04 0.74 6.88 -51.93 -0.36 0.38 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 2.04 6.55 -51.93 -0.34 1.70 16 37 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 38 H 0.18 3.33 5.95 -52.49 -0.31 3.02 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -27.19 324.49 -6.62 -33.81 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.90 Total: 1.66 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.81 Total: 9.59 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.06 Total: -49.72 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.72 Total: -14.88 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.19 -6.62 -33.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562356112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.350 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds