Wall clock time and date at job start Tue Mar 31 2020 01:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47052 * 2 1 4 4 C 1.34732 * 117.00097 * 180.02562 * 3 2 1 5 5 O 1.21476 * 120.00034 * 0.02562 * 4 3 2 6 6 C 1.47699 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.39491 * 120.00721 * 180.02562 * 6 4 3 8 8 N 1.32021 * 119.98077 * 179.70093 * 7 6 4 9 9 C 1.32798 * 119.98667 * 0.54022 * 8 7 6 10 10 N 1.38367 * 119.99140 * 179.72556 * 9 8 7 11 11 C 1.46503 * 119.99963 * 9.78769 * 10 9 8 12 12 C 1.46499 * 119.99982 * 189.79030 * 10 9 8 13 13 H 1.08993 * 109.47445 * 6.01142 * 12 10 9 14 14 C 1.52995 * 109.46821 * 246.00829 * 12 10 9 15 15 C 1.50699 * 109.47217 * 126.01096 * 12 10 9 16 16 H 1.08002 * 120.00200 * 5.17027 * 15 12 10 17 17 C 1.37874 * 120.00074 * 185.16713 * 15 12 10 18 18 N 1.31512 * 119.99957 * 2.07347 * 17 15 12 19 19 Si 1.86800 * 120.00168 * 182.07036 * 17 15 12 20 20 H 1.48504 * 109.47203 * 94.98799 * 19 17 15 21 21 H 1.48498 * 109.47408 * 214.98837 * 19 17 15 22 22 H 1.48501 * 109.47152 * 334.98890 * 19 17 15 23 23 C 1.39883 * 120.01377 * 359.46002 * 9 8 7 24 24 N 1.31454 * 120.02180 * 0.26416 * 23 9 8 25 25 H 1.08993 * 109.47044 * 59.99622 * 1 2 3 26 26 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46905 * 299.99634 * 1 2 3 28 28 H 1.08997 * 109.46905 * 240.00366 * 2 1 3 29 29 H 1.08997 * 109.47753 * 120.00461 * 2 1 3 30 30 H 1.07999 * 120.01379 * 359.97069 * 7 6 4 31 31 H 1.09000 * 109.47164 * 270.00041 * 11 10 9 32 32 H 1.09000 * 109.47056 * 30.00087 * 11 10 9 33 33 H 1.08997 * 109.47182 * 149.99477 * 11 10 9 34 34 H 1.09001 * 109.47866 * 301.22997 * 14 12 10 35 35 H 1.09007 * 109.47451 * 61.23537 * 14 12 10 36 36 H 1.09004 * 109.47218 * 181.23341 * 14 12 10 37 37 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 38 38 H 1.07999 * 119.98456 * 180.24915 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 -0.0005 5 8 4.0897 0.5822 -0.0015 6 6 3.9142 2.9104 0.0000 7 6 5.2970 3.0934 -0.0011 8 7 5.8011 4.3136 -0.0066 9 6 4.9914 5.3662 -0.0002 10 7 5.5196 6.6451 -0.0002 11 6 6.9537 6.8453 -0.2228 12 6 4.6447 7.7989 0.2224 13 1 3.6424 7.4519 0.4733 14 6 4.5872 8.6480 -1.0489 15 6 5.1874 8.6292 1.3569 16 1 6.1359 8.3752 1.8065 17 6 4.4729 9.7133 1.8210 18 7 3.2990 9.9985 1.3011 19 14 5.1722 10.7769 3.1881 20 1 5.8765 11.9430 2.5971 21 1 4.0675 11.2547 4.0579 22 1 6.1286 9.9785 3.9964 23 6 3.6047 5.1823 0.0009 24 7 3.1023 3.9675 0.0009 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9553 2.2372 -0.0019 31 1 7.4760 6.8261 0.7337 32 1 7.3367 6.0498 -0.8620 33 1 7.1153 7.8089 -0.7059 34 1 5.5925 8.9770 -1.3121 35 1 4.1742 8.0540 -1.8643 36 1 3.9537 9.5182 -0.8764 37 1 2.7966 10.7614 1.6273 38 1 2.9467 6.0386 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562356112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:25 Heat of formation + Delta-G solvation = -44.935341 kcal Electronic energy + Delta-G solvation = -21380.481069 eV Core-core repulsion = 18030.062363 eV Total energy + Delta-G solvation = -3350.418706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.28518 -41.09081 -38.60591 -37.62531 -35.59260 -34.63546 -32.75525 -32.08535 -31.03376 -28.18242 -27.29190 -25.95549 -24.88754 -24.02347 -22.69809 -21.71798 -19.49808 -18.90831 -18.37166 -18.01286 -17.72713 -17.62515 -16.59384 -16.25890 -16.08666 -15.25619 -15.21517 -15.15991 -14.53250 -14.38075 -14.16324 -13.58156 -13.53491 -13.13796 -12.98070 -12.91304 -12.80264 -12.66509 -12.47799 -12.44641 -12.40298 -12.27304 -12.09264 -11.88256 -11.49431 -11.32313 -10.94105 -10.56330 -10.18580 -8.69776 -8.18002 -6.34231 -0.49764 0.10668 1.36708 1.42047 1.45696 1.52967 1.56221 1.94393 2.41490 2.75799 3.07467 3.12941 3.30928 3.39373 3.88786 4.04919 4.05358 4.11730 4.35862 4.37968 4.48406 4.65714 4.74160 4.82249 4.90334 4.95123 4.96487 4.99310 5.07660 5.13447 5.32269 5.39391 5.58822 5.64597 5.90815 6.01275 6.24483 6.46991 6.61681 6.75053 6.87537 7.36600 8.84673 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.003863 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.914250 B = 7245.952265 C = 7773.956853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.350 6.350 4 C 0.547 3.453 5 O -0.527 6.527 6 C -0.092 4.092 7 C 0.192 3.808 8 N -0.527 5.527 9 C 0.383 3.617 10 N -0.556 5.556 11 C 0.101 3.899 12 C 0.263 3.737 13 H 0.044 0.956 14 C -0.136 4.136 15 C -0.544 4.544 16 H 0.059 0.941 17 C 0.029 3.971 18 N -0.908 5.908 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.015 4.015 24 N -0.365 5.365 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.201 0.799 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.267 0.733 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -12.797 -3.817 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.391 3.609 5 O -0.417 6.417 6 C -0.229 4.229 7 C 0.028 3.972 8 N -0.250 5.250 9 C 0.139 3.861 10 N -0.259 5.259 11 C -0.041 4.041 12 C 0.162 3.838 13 H 0.061 0.939 14 C -0.195 4.195 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.173 4.173 18 N -0.546 5.546 19 Si 0.782 3.218 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.191 4.191 24 N -0.081 5.081 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.562 -12.768 -3.815 13.338 hybrid contribution 0.200 0.748 0.836 1.139 sum -0.362 -12.021 -2.980 12.390 Atomic orbital electron populations 1.21824 0.90633 1.04424 1.03454 1.23403 0.97046 0.78795 1.03033 1.86692 1.22717 1.33940 1.83223 1.20290 0.81074 0.87712 0.71788 1.90792 1.60910 1.41630 1.48377 1.20574 0.92365 0.91274 1.18735 1.23738 0.92434 0.94927 0.86097 1.68321 1.37085 0.98032 1.21590 1.19942 0.90840 0.87452 0.87820 1.47391 1.10012 1.01987 1.66505 1.21610 0.79023 1.02452 1.01062 1.19037 0.89535 0.81159 0.94047 0.93879 1.21931 1.00871 1.00738 0.95956 1.21479 1.06702 1.12484 1.17626 0.92323 1.25514 0.94883 0.98289 0.98568 1.69976 1.12703 1.28781 1.43151 0.85573 0.78007 0.79032 0.79208 1.19831 1.21053 1.19894 1.23382 0.92774 0.95440 1.07504 1.68121 1.38620 0.98370 1.02952 0.91617 0.87541 0.91791 0.90602 0.90789 0.78224 0.93306 0.90318 0.90326 0.93604 0.94769 0.91491 0.92324 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.29 71.98 0.74 -1.50 16 2 C 0.05 1.06 6.20 71.98 0.45 1.50 16 3 O -0.35 -10.40 10.05 -56.42 -0.57 -10.97 16 4 C 0.55 17.47 7.94 70.32 0.56 18.03 16 5 O -0.53 -17.07 16.12 19.91 0.32 -16.75 16 6 C -0.09 -3.13 6.74 41.73 0.28 -2.85 16 7 C 0.19 6.04 10.76 84.97 0.91 6.96 16 8 N -0.53 -18.38 9.38 -191.70 -1.80 -20.18 16 9 C 0.38 14.54 7.33 133.34 0.98 15.52 16 10 N -0.56 -21.60 2.85 -708.42 -2.02 -23.62 16 11 C 0.10 3.36 9.34 127.77 1.19 4.55 16 12 C 0.26 11.60 2.37 44.24 0.10 11.71 16 13 H 0.04 2.07 5.49 -2.39 -0.01 2.05 16 14 C -0.14 -5.63 9.13 71.98 0.66 -4.97 16 15 C -0.54 -26.62 8.29 25.60 0.21 -26.40 16 16 H 0.06 2.88 7.20 -2.91 -0.02 2.86 16 17 C 0.03 1.43 5.30 84.65 0.45 1.88 16 18 N -0.91 -46.96 11.80 21.45 0.25 -46.71 16 19 Si 0.96 40.22 29.54 68.60 2.03 42.25 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.01 -0.56 10.39 85.15 0.88 0.33 16 24 N -0.37 -13.59 10.26 -183.84 -1.89 -15.48 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.20 5.07 7.63 -2.91 -0.02 5.05 16 31 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 32 H 0.08 2.34 7.55 -2.39 -0.02 2.32 16 33 H 0.08 2.50 6.74 -2.39 -0.02 2.48 16 34 H 0.04 1.77 6.88 -2.39 -0.02 1.75 16 35 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 3.08 6.55 -2.38 -0.02 3.06 16 37 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 38 H 0.17 6.68 5.95 -2.91 -0.02 6.66 16 Total: -1.00 -56.48 324.49 4.82 -51.66 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.07 Total: 15.04 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 7.42 Total: 24.76 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -5.45 Total: -105.98 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.25 Total: -27.72 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -56.48 4.82 -51.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562356112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.726 kcal (2) G-P(sol) polarization free energy of solvation -56.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds