Wall clock time and date at job start Tue Mar 31 2020 01:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47502 * 2 1 4 4 C 1.34734 * 117.00354 * 180.02562 * 3 2 1 5 5 O 1.21480 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.47690 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.39503 * 120.00418 * 179.97438 * 6 4 3 8 8 N 1.32018 * 119.97726 * 180.02562 * 7 6 4 9 9 C 1.32797 * 119.99098 * 0.02562 * 8 7 6 10 10 N 1.38368 * 119.99141 * 179.97438 * 9 8 7 11 11 C 1.46506 * 120.00089 * 11.23232 * 10 9 8 12 12 C 1.46502 * 120.00143 * 191.23229 * 10 9 8 13 13 H 1.08994 * 109.46714 * 5.28947 * 12 10 9 14 14 C 1.52994 * 109.46901 * 125.28664 * 12 10 9 15 15 C 1.50696 * 109.47197 * 245.28544 * 12 10 9 16 16 H 1.08007 * 120.00292 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00344 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00290 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 119.99631 * 0.02562 * 17 15 12 20 20 H 1.48507 * 109.47333 * 89.99526 * 19 17 15 21 21 H 1.48501 * 109.47364 * 209.99568 * 19 17 15 22 22 H 1.48504 * 109.47223 * 329.99617 * 19 17 15 23 23 C 1.39879 * 120.01446 * 0.02562 * 9 8 7 24 24 N 1.31448 * 120.02471 * 359.97438 * 23 9 8 25 25 H 1.08997 * 109.47296 * 59.99313 * 1 2 3 26 26 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46509 * 299.99708 * 1 2 3 28 28 H 1.09002 * 109.46509 * 240.00292 * 2 1 3 29 29 H 1.08997 * 109.47296 * 120.00687 * 2 1 3 30 30 H 1.08001 * 120.01302 * 0.04136 * 7 6 4 31 31 H 1.09000 * 109.46918 * 89.99751 * 11 10 9 32 32 H 1.08998 * 109.47375 * 210.00294 * 11 10 9 33 33 H 1.09001 * 109.46660 * 329.99996 * 11 10 9 34 34 H 1.09001 * 109.47362 * 299.99948 * 14 12 10 35 35 H 1.09001 * 109.47499 * 59.99972 * 14 12 10 36 36 H 1.09002 * 109.47299 * 179.97438 * 14 12 10 37 37 H 0.96999 * 119.99980 * 180.02562 * 18 17 15 38 38 H 1.08008 * 119.98574 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3498 1.5454 -0.0005 5 8 4.0898 0.5819 -0.0015 6 6 3.9143 2.9102 0.0000 7 6 5.2973 3.0930 0.0000 8 7 5.8014 4.3132 0.0010 9 6 4.9918 5.3658 0.0025 10 7 5.5200 6.6447 0.0041 11 6 6.9499 6.8470 -0.2431 12 6 4.6496 7.7965 0.2529 13 1 3.6487 7.4474 0.5065 14 6 5.2120 8.6194 1.4136 15 6 4.5842 8.6534 -0.9850 16 1 5.1355 8.3684 -1.8689 17 6 3.8197 9.8008 -0.9897 18 7 3.7622 10.5484 -2.0702 19 14 2.8656 10.2935 0.5388 20 1 3.7151 11.1603 1.3947 21 1 1.6429 11.0366 0.1411 22 1 2.4803 9.0755 1.2959 23 6 3.6051 5.1820 0.0036 24 7 3.1026 3.9674 0.0026 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9555 2.2367 -0.0011 31 1 7.1192 6.9748 -1.3122 32 1 7.2880 7.7371 0.2874 33 1 7.5061 5.9794 0.1117 34 1 5.2593 7.9997 2.3090 35 1 6.2130 8.9685 1.1601 36 1 4.5646 9.4767 1.5985 37 1 3.2247 11.3558 -2.0733 38 1 2.9471 6.0385 0.0053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562356118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:27 Heat of formation + Delta-G solvation = -17.920261 kcal Electronic energy + Delta-G solvation = -21472.221950 eV Core-core repulsion = 18122.974705 eV Total energy + Delta-G solvation = -3349.247244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98158 -39.87854 -37.29191 -36.45203 -34.15026 -32.90399 -31.82649 -31.06981 -29.96880 -26.98116 -25.41797 -24.69367 -23.60456 -22.97134 -21.45919 -20.18008 -18.22958 -17.59000 -16.84002 -16.78678 -16.53876 -16.50802 -15.33108 -14.75128 -14.69353 -14.04580 -14.00022 -13.80532 -13.26720 -13.06330 -12.92615 -12.84459 -12.45271 -12.03649 -11.98892 -11.75768 -11.64429 -11.47926 -11.14812 -11.01930 -10.79989 -10.67722 -10.53260 -10.35097 -10.05070 -9.78288 -9.34979 -8.88214 -8.82208 -7.26493 -6.34942 -4.39736 0.80764 1.45228 2.64602 2.66814 3.07020 3.15116 3.21879 3.25804 4.08160 4.13179 4.36258 4.56658 4.72003 4.83160 4.87763 4.94646 5.06655 5.15404 5.34102 5.56218 5.64612 5.66599 5.77050 5.86561 5.91717 6.01673 6.06501 6.12610 6.26983 6.35794 6.44132 6.49676 6.75092 7.08144 7.28005 7.54345 7.70996 7.90413 8.13247 8.25759 8.67935 9.22124 10.77289 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.004279 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.637915 B = 6542.506572 C = 7342.159980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.337 6.337 4 C 0.544 3.456 5 O -0.520 6.520 6 C -0.083 4.083 7 C 0.186 3.814 8 N -0.525 5.525 9 C 0.394 3.606 10 N -0.544 5.544 11 C 0.092 3.908 12 C 0.233 3.767 13 H 0.054 0.946 14 C -0.166 4.166 15 C -0.539 4.539 16 H 0.083 0.917 17 C 0.081 3.919 18 N -0.885 5.885 19 Si 0.881 3.119 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.264 1.264 23 C -0.002 4.002 24 N -0.356 5.356 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.174 0.826 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.269 0.731 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -13.507 6.009 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.253 6.253 4 C 0.388 3.612 5 O -0.409 6.409 6 C -0.220 4.220 7 C 0.022 3.978 8 N -0.248 5.248 9 C 0.150 3.850 10 N -0.247 5.247 11 C -0.050 4.050 12 C 0.131 3.869 13 H 0.072 0.928 14 C -0.223 4.223 15 C -0.577 4.577 16 H 0.101 0.899 17 C -0.124 4.124 18 N -0.521 5.521 19 Si 0.711 3.289 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.179 4.179 24 N -0.071 5.071 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.191 0.809 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.028 -13.444 5.912 14.723 hybrid contribution -0.463 0.396 0.641 0.884 sum -1.491 -13.048 6.552 14.677 Atomic orbital electron populations 1.21790 0.92682 1.02630 1.03785 1.23023 0.95421 0.80593 1.02370 1.86702 1.23521 1.31399 1.83658 1.20457 0.80582 0.88236 0.71904 1.90809 1.60642 1.41602 1.47863 1.20280 0.91808 0.91035 1.18915 1.23329 0.92340 0.94690 0.87460 1.68228 1.37213 0.97811 1.21541 1.19815 0.90658 0.87081 0.87443 1.46998 1.09642 1.01875 1.66169 1.21658 0.79909 1.02000 1.01479 1.19595 0.89287 0.82588 0.95425 0.92808 1.22512 1.02293 0.99866 0.97671 1.21103 1.31455 1.07390 0.97784 0.89936 1.24873 0.95678 0.95720 0.96137 1.69854 1.39603 1.14806 1.27797 0.86957 0.79527 0.79397 0.83052 1.20124 1.21737 1.18915 1.23461 0.92675 0.95401 1.06342 1.68158 1.38013 0.98136 1.02784 0.91352 0.90453 0.91416 0.91332 0.91377 0.80859 0.92541 0.90790 0.90923 0.94359 0.91830 0.92484 0.92047 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.66 6.20 37.16 0.23 0.89 16 3 O -0.34 -5.07 10.05 -40.59 -0.41 -5.48 16 4 C 0.54 8.79 7.94 34.59 0.27 9.07 16 5 O -0.52 -8.65 16.12 -19.25 -0.31 -8.96 16 6 C -0.08 -1.42 6.74 -82.90 -0.56 -1.98 16 7 C 0.19 2.95 10.76 -17.00 -0.18 2.77 16 8 N -0.52 -9.07 9.22 -11.94 -0.11 -9.18 16 9 C 0.39 7.29 7.33 -155.01 -1.14 6.16 16 10 N -0.54 -10.26 2.85 -175.26 -0.50 -10.76 16 11 C 0.09 1.53 10.03 59.85 0.60 2.13 16 12 C 0.23 4.80 2.08 -69.09 -0.14 4.66 16 13 H 0.05 1.11 4.57 -51.93 -0.24 0.87 16 14 C -0.17 -3.10 8.54 37.15 0.32 -2.79 16 15 C -0.54 -13.43 9.04 -34.44 -0.31 -13.74 16 16 H 0.08 2.30 8.05 -52.48 -0.42 1.88 16 17 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 18 N -0.88 -24.83 13.96 55.43 0.77 -24.06 16 19 Si 0.88 19.42 24.37 -169.99 -4.14 15.28 16 20 H -0.27 -5.88 6.87 56.52 0.39 -5.49 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -5.45 6.53 56.52 0.37 -5.09 16 23 C 0.00 -0.03 10.39 -17.10 -0.18 -0.21 16 24 N -0.36 -6.49 10.26 -9.46 -0.10 -6.59 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.17 2.31 7.63 -52.49 -0.40 1.91 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.15 6.16 -51.93 -0.32 0.83 16 33 H 0.07 1.09 7.24 -51.93 -0.38 0.72 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.14 6.51 -51.93 -0.34 0.80 16 36 H 0.06 1.12 3.27 -51.93 -0.17 0.95 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.18 3.24 5.98 -52.48 -0.31 2.93 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -28.77 316.82 -5.54 -34.31 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.72 Total: 2.62 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.80 Total: 8.05 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.07 Total: -50.59 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.72 Total: -14.44 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.14 Total: 15.28 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.77 -5.54 -34.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562356118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.391 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds