Wall clock time and date at job start Tue Mar 31 2020 01:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47502 * 2 1 4 4 C 1.34734 * 117.00354 * 180.02562 * 3 2 1 5 5 O 1.21480 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.47690 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.39503 * 120.00418 * 179.97438 * 6 4 3 8 8 N 1.32018 * 119.97726 * 180.02562 * 7 6 4 9 9 C 1.32797 * 119.99098 * 0.02562 * 8 7 6 10 10 N 1.38368 * 119.99141 * 179.97438 * 9 8 7 11 11 C 1.46506 * 120.00089 * 11.23232 * 10 9 8 12 12 C 1.46502 * 120.00143 * 191.23229 * 10 9 8 13 13 H 1.08994 * 109.46714 * 5.28947 * 12 10 9 14 14 C 1.52994 * 109.46901 * 125.28664 * 12 10 9 15 15 C 1.50696 * 109.47197 * 245.28544 * 12 10 9 16 16 H 1.08007 * 120.00292 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00344 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00290 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 119.99631 * 0.02562 * 17 15 12 20 20 H 1.48507 * 109.47333 * 89.99526 * 19 17 15 21 21 H 1.48501 * 109.47364 * 209.99568 * 19 17 15 22 22 H 1.48504 * 109.47223 * 329.99617 * 19 17 15 23 23 C 1.39879 * 120.01446 * 0.02562 * 9 8 7 24 24 N 1.31448 * 120.02471 * 359.97438 * 23 9 8 25 25 H 1.08997 * 109.47296 * 59.99313 * 1 2 3 26 26 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46509 * 299.99708 * 1 2 3 28 28 H 1.09002 * 109.46509 * 240.00292 * 2 1 3 29 29 H 1.08997 * 109.47296 * 120.00687 * 2 1 3 30 30 H 1.08001 * 120.01302 * 0.04136 * 7 6 4 31 31 H 1.09000 * 109.46918 * 89.99751 * 11 10 9 32 32 H 1.08998 * 109.47375 * 210.00294 * 11 10 9 33 33 H 1.09001 * 109.46660 * 329.99996 * 11 10 9 34 34 H 1.09001 * 109.47362 * 299.99948 * 14 12 10 35 35 H 1.09001 * 109.47499 * 59.99972 * 14 12 10 36 36 H 1.09002 * 109.47299 * 179.97438 * 14 12 10 37 37 H 0.96999 * 119.99980 * 180.02562 * 18 17 15 38 38 H 1.08008 * 119.98574 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3498 1.5454 -0.0005 5 8 4.0898 0.5819 -0.0015 6 6 3.9143 2.9102 0.0000 7 6 5.2973 3.0930 0.0000 8 7 5.8014 4.3132 0.0010 9 6 4.9918 5.3658 0.0025 10 7 5.5200 6.6447 0.0041 11 6 6.9499 6.8470 -0.2431 12 6 4.6496 7.7965 0.2529 13 1 3.6487 7.4474 0.5065 14 6 5.2120 8.6194 1.4136 15 6 4.5842 8.6534 -0.9850 16 1 5.1355 8.3684 -1.8689 17 6 3.8197 9.8008 -0.9897 18 7 3.7622 10.5484 -2.0702 19 14 2.8656 10.2935 0.5388 20 1 3.7151 11.1603 1.3947 21 1 1.6429 11.0366 0.1411 22 1 2.4803 9.0755 1.2959 23 6 3.6051 5.1820 0.0036 24 7 3.1026 3.9674 0.0026 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9555 2.2367 -0.0011 31 1 7.1192 6.9748 -1.3122 32 1 7.2880 7.7371 0.2874 33 1 7.5061 5.9794 0.1117 34 1 5.2593 7.9997 2.3090 35 1 6.2130 8.9685 1.1601 36 1 4.5646 9.4767 1.5985 37 1 3.2247 11.3558 -2.0733 38 1 2.9471 6.0385 0.0053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562356118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:27 Heat of formation + Delta-G solvation = -35.788025 kcal Electronic energy + Delta-G solvation = -21472.996754 eV Core-core repulsion = 18122.974705 eV Total energy + Delta-G solvation = -3350.022049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.32901 -41.11585 -38.76221 -37.64246 -35.62685 -34.64697 -32.87266 -32.46501 -31.38545 -28.33797 -27.17386 -26.05222 -24.93214 -24.06449 -22.70724 -21.68415 -19.50887 -19.14247 -18.48669 -18.24622 -17.78217 -17.63710 -16.91875 -16.14925 -16.07089 -15.39434 -15.25439 -15.12484 -14.80464 -14.42938 -14.21670 -14.06355 -13.62514 -13.57890 -13.17860 -13.09534 -12.92420 -12.64414 -12.47775 -12.43345 -12.32963 -12.07082 -11.89977 -11.58474 -11.50064 -11.49011 -10.97976 -10.79499 -10.22944 -8.71424 -8.33780 -6.42504 -0.53738 0.07307 1.33758 1.34827 1.40117 1.49001 1.53004 1.84484 2.28902 2.71588 2.99655 3.07268 3.26377 3.33927 3.85509 4.00594 4.04584 4.10878 4.21221 4.35911 4.38709 4.52574 4.56617 4.62326 4.70017 4.81793 4.89496 4.93019 4.94748 5.08539 5.12810 5.29553 5.38487 5.41442 5.68167 6.11918 6.14673 6.40552 6.60689 6.66263 6.81212 7.23918 8.82299 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.004279 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.637915 B = 6542.506572 C = 7342.159980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.546 3.454 5 O -0.526 6.526 6 C -0.087 4.087 7 C 0.193 3.807 8 N -0.523 5.523 9 C 0.386 3.614 10 N -0.554 5.554 11 C 0.095 3.905 12 C 0.236 3.764 13 H 0.059 0.941 14 C -0.162 4.162 15 C -0.534 4.534 16 H 0.038 0.962 17 C 0.026 3.974 18 N -0.939 5.939 19 Si 0.940 3.060 20 H -0.260 1.260 21 H -0.300 1.300 22 H -0.238 1.238 23 C -0.015 4.015 24 N -0.365 5.365 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.203 0.797 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.269 0.731 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -15.187 8.070 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.391 3.609 5 O -0.416 6.416 6 C -0.225 4.225 7 C 0.029 3.971 8 N -0.246 5.246 9 C 0.143 3.857 10 N -0.258 5.258 11 C -0.048 4.048 12 C 0.133 3.867 13 H 0.077 0.923 14 C -0.219 4.219 15 C -0.572 4.572 16 H 0.056 0.944 17 C -0.174 4.174 18 N -0.578 5.578 19 Si 0.766 3.234 20 H -0.185 1.185 21 H -0.227 1.227 22 H -0.162 1.162 23 C -0.191 4.191 24 N -0.080 5.080 25 H 0.082 0.918 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.219 0.781 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.289 -15.157 7.988 17.182 hybrid contribution -0.375 0.714 -0.099 0.812 sum -1.663 -14.444 7.889 16.542 Atomic orbital electron populations 1.21827 0.90658 1.04414 1.03458 1.23403 0.97024 0.78775 1.03053 1.86689 1.22710 1.33955 1.83199 1.20293 0.81095 0.87720 0.71831 1.90800 1.60912 1.41612 1.48258 1.20603 0.92396 0.91276 1.18201 1.23758 0.92418 0.94897 0.86059 1.68267 1.37064 0.97993 1.21315 1.19869 0.90818 0.87276 0.87780 1.46902 1.10121 1.01610 1.67125 1.21716 0.79045 1.03260 1.00738 1.19407 0.90358 0.82794 0.94091 0.92321 1.22412 1.02210 0.99608 0.97689 1.21286 1.29999 1.07764 0.98190 0.94378 1.25701 0.96797 0.95744 0.99125 1.70013 1.41452 1.15785 1.30513 0.85998 0.77762 0.80052 0.79593 1.18543 1.22737 1.16176 1.23426 0.92792 0.95537 1.07302 1.68134 1.38620 0.98363 1.02916 0.91797 0.87582 0.91595 0.90790 0.90564 0.78061 0.94086 0.89804 0.89208 0.91589 0.91365 0.93029 0.92161 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.29 71.98 0.74 -1.40 16 2 C 0.05 1.02 6.20 71.98 0.45 1.46 16 3 O -0.35 -10.01 10.05 -56.44 -0.57 -10.58 16 4 C 0.55 16.75 7.94 70.32 0.56 17.31 16 5 O -0.53 -16.42 16.12 19.90 0.32 -16.10 16 6 C -0.09 -2.83 6.74 41.73 0.28 -2.55 16 7 C 0.19 5.71 10.76 84.97 0.91 6.63 16 8 N -0.52 -17.19 9.22 -191.70 -1.77 -18.96 16 9 C 0.39 13.86 7.33 133.34 0.98 14.84 16 10 N -0.55 -20.42 2.85 -708.41 -2.02 -22.44 16 11 C 0.09 3.05 10.03 127.77 1.28 4.33 16 12 C 0.24 9.50 2.08 44.24 0.09 9.59 16 13 H 0.06 2.33 4.57 -2.39 -0.01 2.32 16 14 C -0.16 -5.64 8.54 71.98 0.61 -5.02 16 15 C -0.53 -27.10 9.04 25.60 0.23 -26.87 16 16 H 0.04 2.22 8.05 -2.91 -0.02 2.20 16 17 C 0.03 1.36 5.45 84.65 0.46 1.82 16 18 N -0.94 -54.49 13.96 21.45 0.30 -54.19 16 19 Si 0.94 39.40 24.37 68.60 1.67 41.07 16 20 H -0.26 -10.23 6.87 99.48 0.68 -9.54 16 21 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.24 -8.91 6.53 99.48 0.65 -8.26 16 23 C -0.01 -0.53 10.39 85.15 0.88 0.35 16 24 N -0.37 -12.96 10.26 -183.84 -1.89 -14.85 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.20 4.77 7.63 -2.91 -0.02 4.75 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 2.50 6.16 -2.39 -0.01 2.48 16 33 H 0.09 2.55 7.24 -2.39 -0.02 2.54 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.29 6.51 -2.39 -0.02 2.28 16 36 H 0.05 1.86 3.27 -2.39 -0.01 1.86 16 37 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.18 6.33 5.98 -2.91 -0.02 6.31 16 Total: -1.00 -62.50 316.82 4.54 -57.96 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.00 Total: 17.58 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 7.48 Total: 20.50 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -5.37 Total: -110.43 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.25 Total: -26.68 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.67 Total: 41.07 kcal Total: -62.50 4.54 -57.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562356118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.169 kcal (2) G-P(sol) polarization free energy of solvation -62.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds