Wall clock time and date at job start Tue Mar 31 2020 02:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35753 * 117.00275 * 2 1 4 4 C 1.39444 * 120.80969 * 0.02562 * 3 2 1 5 5 C 1.37842 * 119.24419 * 179.97438 * 4 3 2 6 6 N 1.32025 * 120.90525 * 359.97438 * 5 4 3 7 7 C 1.32444 * 121.76963 * 359.97438 * 6 5 4 8 8 N 1.39423 * 119.66283 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00107 * 5.37522 * 8 7 6 10 10 O 1.21276 * 120.00408 * 354.90738 * 9 8 7 11 11 C 1.50701 * 119.99995 * 174.90990 * 9 8 7 12 12 H 1.09004 * 109.47410 * 39.99957 * 11 9 8 13 13 N 1.46904 * 109.47418 * 159.99769 * 11 9 8 14 14 C 1.53005 * 109.47141 * 279.99947 * 11 9 8 15 15 C 1.53001 * 109.47150 * 175.00077 * 14 11 9 16 16 C 1.50705 * 109.46868 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99547 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99831 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00103 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47025 * 90.00671 * 20 18 16 22 22 H 1.48504 * 109.46914 * 210.00334 * 20 18 16 23 23 H 1.48499 * 109.47232 * 330.00169 * 20 18 16 24 24 C 1.38798 * 120.66976 * 0.25880 * 7 6 5 25 25 H 1.08992 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47236 * 300.00087 * 1 2 3 27 27 H 1.09001 * 109.46850 * 59.99715 * 1 2 3 28 28 H 1.08005 * 120.37924 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.54844 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99715 * 185.37578 * 8 7 6 31 31 H 1.00903 * 110.99434 * 60.00224 * 13 11 9 32 32 H 1.00899 * 111.00083 * 183.95157 * 13 11 9 33 33 H 1.09004 * 109.46886 * 295.00235 * 14 11 9 34 34 H 1.08997 * 109.47196 * 54.99772 * 14 11 9 35 35 H 1.08992 * 109.47033 * 299.99714 * 15 14 11 36 36 H 1.08997 * 109.47311 * 60.00328 * 15 14 11 37 37 H 0.96996 * 120.00225 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.48738 * 179.72095 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3025 2.3897 0.0005 5 6 1.9617 3.6003 0.0011 6 7 3.2808 3.6541 0.0016 7 6 4.0235 2.5575 0.0021 8 7 5.4135 2.6655 0.0021 9 6 5.9953 3.8763 0.1108 10 8 5.3129 4.8788 0.1157 11 6 7.4940 3.9845 0.2264 12 1 7.9631 3.2625 -0.4422 13 7 7.9171 5.3416 -0.1442 14 6 7.9167 3.6942 1.6679 15 6 9.4440 3.6812 1.7588 16 6 9.8602 3.3947 3.1786 17 1 9.1105 3.2381 3.9399 18 6 11.1982 3.3336 3.5056 19 7 11.5616 3.0841 4.7447 20 14 12.4950 3.6052 2.1888 21 1 12.8334 5.0494 2.1179 22 1 13.7140 2.8272 2.5265 23 1 11.9685 3.1550 0.8753 24 6 3.4320 1.3018 -0.0033 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2230 2.3556 0.0014 29 1 1.3912 4.5173 0.0019 30 1 5.9618 1.8692 -0.0762 31 1 7.4954 6.0297 0.4614 32 1 8.9229 5.4214 -0.1370 33 1 7.5202 4.4678 2.3256 34 1 7.5263 2.7233 1.9725 35 1 9.8404 2.9076 1.1012 36 1 9.8344 4.6522 1.4542 37 1 12.5028 3.0407 4.9748 38 1 4.0404 0.4095 -0.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573485998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:42 Heat of formation + Delta-G solvation = -29.084304 kcal Electronic energy + Delta-G solvation = -20978.090213 eV Core-core repulsion = 17628.358859 eV Total energy + Delta-G solvation = -3349.731354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04570 -39.76479 -38.25068 -35.70519 -34.78517 -32.82114 -31.71179 -30.37568 -30.33393 -27.92117 -26.87443 -24.30643 -23.81933 -22.40784 -20.60941 -19.98973 -18.81867 -17.71644 -16.91616 -16.68383 -16.38201 -16.19769 -15.61296 -15.15793 -14.90031 -14.40847 -14.35469 -14.21293 -13.89469 -13.76012 -13.30716 -12.90904 -12.82541 -12.67889 -12.03445 -11.87592 -11.63710 -11.37120 -11.00686 -10.72493 -10.43065 -10.14486 -9.89028 -9.81685 -9.32948 -9.10694 -9.06254 -8.63202 -8.44099 -8.34921 -6.12543 -4.12402 0.94430 1.24009 2.55392 2.82689 3.08287 3.24588 3.32870 3.33756 3.80397 4.30974 4.36749 4.46590 4.71982 4.75513 4.78983 4.93669 4.99533 5.02452 5.06695 5.20266 5.35284 5.39056 5.53277 5.55313 5.87183 5.95803 6.09749 6.28739 6.55534 6.62560 6.93213 7.06140 7.10498 7.19715 7.37940 7.64910 7.74426 8.00953 8.36135 8.43569 8.91509 9.48457 11.00707 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.003286 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.078852 B = 8519.270646 C = 9108.795467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.192 3.808 4 C -0.298 4.298 5 C 0.169 3.831 6 N -0.497 5.497 7 C 0.404 3.596 8 N -0.661 5.661 9 C 0.515 3.485 10 O -0.463 6.463 11 C 0.074 3.926 12 H 0.100 0.900 13 N -0.830 5.830 14 C -0.131 4.131 15 C -0.010 4.010 16 C -0.525 4.525 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.247 4.247 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.419 0.581 31 H 0.349 0.651 32 H 0.352 0.648 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.019 0.981 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.269 -5.156 -11.976 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.138 3.862 4 C -0.321 4.321 5 C 0.011 3.989 6 N -0.215 5.215 7 C 0.173 3.827 8 N -0.308 5.308 9 C 0.301 3.699 10 O -0.330 6.330 11 C -0.041 4.041 12 H 0.117 0.883 13 N -0.362 5.362 14 C -0.170 4.170 15 C -0.047 4.047 16 C -0.563 4.563 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.272 4.272 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.178 0.822 30 H 0.257 0.743 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.342 -3.935 -12.539 24.218 hybrid contribution 0.780 -1.103 0.474 1.432 sum -19.563 -5.039 -12.065 23.530 Atomic orbital electron populations 1.23125 0.77714 1.04229 1.01753 1.86049 1.21920 1.26397 1.87854 1.18888 0.91596 0.84479 0.91192 1.22084 1.01356 0.93183 1.15458 1.22469 0.89200 0.97003 0.90276 1.67798 1.06507 1.29402 1.17829 1.18184 0.85085 0.88509 0.90962 1.43786 1.03388 1.11531 1.72075 1.21108 0.90899 0.82390 0.75501 1.90756 1.64503 1.34804 1.42894 1.21518 0.89788 0.94018 0.98767 0.88255 1.58725 1.14397 1.02959 1.60156 1.22226 1.00008 1.02142 0.92646 1.19574 0.90398 0.96347 0.98429 1.21064 0.93029 1.49045 0.93123 0.91055 1.25046 0.98664 0.94449 0.95291 1.69910 1.16862 1.49305 1.17837 0.86762 0.81231 0.78568 0.82608 1.20207 1.21332 1.18934 1.20611 0.92709 0.97865 1.15993 0.87954 0.92255 0.92325 0.84519 0.82250 0.74343 0.83696 0.83254 0.91899 0.91803 0.96261 0.96975 0.92605 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.84 101.05 0.99 1.14 16 2 O -0.31 -3.02 10.51 -18.97 -0.20 -3.22 16 3 C 0.19 2.11 6.73 -38.86 -0.26 1.85 16 4 C -0.30 -2.94 9.11 -39.28 -0.36 -3.30 16 5 C 0.17 1.99 11.17 -17.61 -0.20 1.80 16 6 N -0.50 -7.72 7.89 -12.44 -0.10 -7.82 16 7 C 0.40 5.71 7.42 -154.70 -1.15 4.56 16 8 N -0.66 -8.91 5.39 -11.46 -0.06 -8.97 16 9 C 0.52 8.42 7.04 -10.99 -0.08 8.34 16 10 O -0.46 -9.05 14.51 5.56 0.08 -8.96 16 11 C 0.07 1.17 3.21 -68.86 -0.22 0.95 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 13 N -0.83 -13.13 8.94 -5.65 -0.05 -13.18 16 14 C -0.13 -2.41 4.78 -26.73 -0.13 -2.54 16 15 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 16 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 20 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 24 C -0.25 -2.92 9.90 -39.10 -0.39 -3.31 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 27 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 28 H 0.14 0.92 6.46 -52.48 -0.34 0.58 16 29 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.42 4.22 8.70 -40.82 -0.36 3.86 16 31 H 0.35 5.67 8.58 -39.29 -0.34 5.33 16 32 H 0.35 5.34 7.55 -39.29 -0.30 5.04 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.26 6.30 -51.93 -0.33 -0.07 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -35.00 322.72 -6.63 -41.63 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.95 Total: 9.78 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.32 Total: -3.82 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.56 Total: -56.54 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.12 Total: -12.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.00 -6.63 -41.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573485998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.550 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds