Wall clock time and date at job start Tue Mar 31 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35753 * 117.00275 * 2 1 4 4 C 1.39444 * 120.80969 * 0.02562 * 3 2 1 5 5 C 1.37842 * 119.24419 * 179.97438 * 4 3 2 6 6 N 1.32025 * 120.90525 * 359.97438 * 5 4 3 7 7 C 1.32444 * 121.76963 * 359.97438 * 6 5 4 8 8 N 1.39423 * 119.66283 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00107 * 5.37522 * 8 7 6 10 10 O 1.21276 * 120.00408 * 354.90738 * 9 8 7 11 11 C 1.50701 * 119.99995 * 174.90990 * 9 8 7 12 12 H 1.09004 * 109.47410 * 39.99957 * 11 9 8 13 13 N 1.46904 * 109.47418 * 159.99769 * 11 9 8 14 14 C 1.53005 * 109.47141 * 279.99947 * 11 9 8 15 15 C 1.53001 * 109.47150 * 175.00077 * 14 11 9 16 16 C 1.50705 * 109.46868 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99547 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99831 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00103 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47025 * 90.00671 * 20 18 16 22 22 H 1.48504 * 109.46914 * 210.00334 * 20 18 16 23 23 H 1.48499 * 109.47232 * 330.00169 * 20 18 16 24 24 C 1.38798 * 120.66976 * 0.25880 * 7 6 5 25 25 H 1.08992 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47236 * 300.00087 * 1 2 3 27 27 H 1.09001 * 109.46850 * 59.99715 * 1 2 3 28 28 H 1.08005 * 120.37924 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.54844 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99715 * 185.37578 * 8 7 6 31 31 H 1.00903 * 110.99434 * 60.00224 * 13 11 9 32 32 H 1.00899 * 111.00083 * 183.95157 * 13 11 9 33 33 H 1.09004 * 109.46886 * 295.00235 * 14 11 9 34 34 H 1.08997 * 109.47196 * 54.99772 * 14 11 9 35 35 H 1.08992 * 109.47033 * 299.99714 * 15 14 11 36 36 H 1.08997 * 109.47311 * 60.00328 * 15 14 11 37 37 H 0.96996 * 120.00225 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.48738 * 179.72095 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3025 2.3897 0.0005 5 6 1.9617 3.6003 0.0011 6 7 3.2808 3.6541 0.0016 7 6 4.0235 2.5575 0.0021 8 7 5.4135 2.6655 0.0021 9 6 5.9953 3.8763 0.1108 10 8 5.3129 4.8788 0.1157 11 6 7.4940 3.9845 0.2264 12 1 7.9631 3.2625 -0.4422 13 7 7.9171 5.3416 -0.1442 14 6 7.9167 3.6942 1.6679 15 6 9.4440 3.6812 1.7588 16 6 9.8602 3.3947 3.1786 17 1 9.1105 3.2381 3.9399 18 6 11.1982 3.3336 3.5056 19 7 11.5616 3.0841 4.7447 20 14 12.4950 3.6052 2.1888 21 1 12.8334 5.0494 2.1179 22 1 13.7140 2.8272 2.5265 23 1 11.9685 3.1550 0.8753 24 6 3.4320 1.3018 -0.0033 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2230 2.3556 0.0014 29 1 1.3912 4.5173 0.0019 30 1 5.9618 1.8692 -0.0762 31 1 7.4954 6.0297 0.4614 32 1 8.9229 5.4214 -0.1370 33 1 7.5202 4.4678 2.3256 34 1 7.5263 2.7233 1.9725 35 1 9.8404 2.9076 1.1012 36 1 9.8344 4.6522 1.4542 37 1 12.5028 3.0407 4.9748 38 1 4.0404 0.4095 -0.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573485998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:41 Heat of formation + Delta-G solvation = -56.308856 kcal Electronic energy + Delta-G solvation = -20979.270758 eV Core-core repulsion = 17628.358859 eV Total energy + Delta-G solvation = -3350.911899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99529 -40.78883 -39.14284 -37.14162 -35.90589 -34.80879 -32.55957 -32.08350 -31.30527 -28.72744 -28.12300 -25.84016 -24.70858 -23.53603 -22.13879 -21.24019 -19.68971 -19.19503 -18.51722 -17.73487 -17.26476 -16.86676 -16.52251 -16.40543 -16.23370 -15.92575 -15.69315 -15.28025 -15.05654 -14.75102 -14.62336 -14.59168 -14.20035 -13.58108 -13.41460 -13.06477 -12.68887 -12.54588 -12.27038 -12.08109 -11.91530 -11.74931 -11.65460 -11.40550 -11.10286 -10.76750 -10.15493 -9.91886 -9.66031 -9.39038 -8.29328 -6.35190 0.03178 0.36524 1.39923 1.41261 1.52776 1.60100 1.67661 2.31312 2.37218 2.87743 3.06477 3.32681 3.70151 3.70925 3.93137 4.06187 4.07207 4.07372 4.16633 4.37065 4.40427 4.50442 4.56871 4.69897 4.72833 4.77978 4.94515 5.04540 5.10506 5.36170 5.47193 5.61483 5.63305 6.00988 6.21483 6.23045 6.25712 6.49002 6.73696 6.96724 7.29758 7.31135 8.87654 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.003286 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.078852 B = 8519.270646 C = 9108.795467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.186 3.814 4 C -0.281 4.281 5 C 0.152 3.848 6 N -0.541 5.541 7 C 0.377 3.623 8 N -0.652 5.652 9 C 0.516 3.484 10 O -0.502 6.502 11 C 0.086 3.914 12 H 0.128 0.872 13 N -0.830 5.830 14 C -0.119 4.119 15 C -0.005 4.005 16 C -0.536 4.536 17 H 0.025 0.975 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.234 1.234 24 C -0.248 4.248 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.434 0.566 31 H 0.346 0.654 32 H 0.357 0.643 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.109 -6.003 -14.381 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.132 3.868 4 C -0.303 4.303 5 C -0.005 4.005 6 N -0.260 5.260 7 C 0.147 3.853 8 N -0.300 5.300 9 C 0.302 3.698 10 O -0.372 6.372 11 C -0.029 4.029 12 H 0.145 0.855 13 N -0.362 5.362 14 C -0.159 4.159 15 C -0.043 4.043 16 C -0.574 4.574 17 H 0.043 0.957 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.156 1.156 24 C -0.272 4.272 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.189 0.811 29 H 0.197 0.803 30 H 0.274 0.726 31 H 0.159 0.841 32 H 0.173 0.827 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.226 -4.825 -14.967 26.416 hybrid contribution 0.827 -0.929 1.312 1.808 sum -20.399 -5.754 -13.654 25.212 Atomic orbital electron populations 1.23476 0.75463 1.06076 1.02869 1.86047 1.24233 1.25654 1.87518 1.19047 0.91598 0.85425 0.90751 1.22384 1.02963 0.92008 1.12939 1.22891 0.88411 0.98752 0.90433 1.67701 1.08331 1.30799 1.19192 1.18362 0.85084 0.89184 0.92718 1.43588 1.03758 1.11224 1.71419 1.21157 0.90933 0.82722 0.74998 1.90735 1.65226 1.36242 1.44957 1.21432 0.89817 0.94649 0.97022 0.85474 1.58743 1.14731 1.02856 1.59863 1.22035 0.97742 1.01583 0.94543 1.19504 0.92623 0.97228 0.94935 1.21454 0.92334 1.48457 0.95124 0.95705 1.26107 1.01487 0.94114 0.97848 1.70086 1.17520 1.51276 1.20632 0.85585 0.77477 0.78775 0.80352 1.19352 1.21506 1.15645 1.20773 0.93651 0.97533 1.15263 0.85944 0.91269 0.90980 0.81143 0.80290 0.72644 0.84117 0.82675 0.94097 0.91669 0.94602 0.95677 0.92527 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.84 113.37 1.12 1.23 16 2 O -0.32 -5.50 10.51 -90.78 -0.95 -6.46 16 3 C 0.19 3.74 6.73 22.74 0.15 3.90 16 4 C -0.28 -4.93 9.11 22.47 0.20 -4.73 16 5 C 0.15 3.45 11.17 84.57 0.94 4.39 16 6 N -0.54 -16.78 7.89 -193.28 -1.52 -18.30 16 7 C 0.38 10.50 7.42 132.82 0.99 11.49 16 8 N -0.65 -17.14 5.39 -308.56 -1.66 -18.81 16 9 C 0.52 16.62 7.04 87.66 0.62 17.24 16 10 O -0.50 -19.81 14.51 -3.02 -0.04 -19.85 16 11 C 0.09 2.57 3.21 44.17 0.14 2.71 16 12 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 13 N -0.83 -25.01 8.94 -171.78 -1.54 -26.55 16 14 C -0.12 -4.35 4.78 30.60 0.15 -4.20 16 15 C -0.01 -0.23 3.81 29.85 0.11 -0.12 16 16 C -0.54 -30.03 9.66 25.60 0.25 -29.78 16 17 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 18 C 0.00 0.06 5.47 84.65 0.46 0.52 16 19 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 20 Si 0.96 42.29 27.47 68.60 1.88 44.18 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 24 C -0.25 -5.58 9.90 22.58 0.22 -5.36 16 25 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.07 0.43 7.71 -2.38 -0.02 0.41 16 27 H 0.07 0.39 7.71 -2.39 -0.02 0.37 16 28 H 0.17 1.70 6.46 -2.91 -0.02 1.68 16 29 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.43 8.17 8.70 -92.71 -0.81 7.36 16 31 H 0.35 11.04 8.58 -89.69 -0.77 10.27 16 32 H 0.36 9.98 7.55 -89.69 -0.68 9.30 16 33 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.04 1.43 7.20 -2.39 -0.02 1.41 16 36 H 0.02 1.01 6.30 -2.39 -0.02 1.00 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -78.31 322.72 0.62 -77.68 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -1.20 Total: 30.05 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.35 Total: -2.71 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -4.42 Total: -122.90 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -1.00 Total: -26.31 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Total: -78.31 0.62 -77.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573485998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.375 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds