Wall clock time and date at job start Tue Mar 31 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47665 * 2 1 4 4 C 1.37097 * 120.00251 * 264.76946 * 3 2 1 5 5 H 1.08003 * 119.99572 * 138.84811 * 4 3 2 6 6 C 1.38946 * 120.00006 * 318.85176 * 4 3 2 7 7 N 1.31405 * 119.99992 * 341.82576 * 6 4 3 8 8 Si 1.86805 * 119.99518 * 161.82380 * 6 4 3 9 9 H 1.48496 * 109.47467 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47042 * 120.00427 * 8 6 4 11 11 H 1.48497 * 109.46940 * 239.99639 * 8 6 4 12 12 C 1.34780 * 119.99638 * 84.76776 * 3 2 1 13 13 O 1.21294 * 119.99608 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00152 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.47172 * 179.97438 * 14 12 3 16 16 C 1.53002 * 109.46913 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.46805 * 180.02562 * 16 15 14 18 18 C 1.38247 * 119.97208 * 270.27474 * 17 16 15 19 19 C 1.38194 * 120.02502 * 180.32094 * 18 17 16 20 20 C 1.38461 * 119.97710 * 359.42646 * 19 18 17 21 21 F 1.35096 * 120.03231 * 180.29623 * 20 19 18 22 22 C 1.38465 * 119.94460 * 0.27340 * 20 19 18 23 23 C 1.38197 * 119.97275 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47177 * 59.99667 * 1 2 3 25 25 H 1.08997 * 109.47709 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47109 * 299.99863 * 1 2 3 27 27 H 1.09006 * 109.47109 * 240.00137 * 2 1 3 28 28 H 1.08998 * 109.47152 * 120.00885 * 2 1 3 29 29 H 0.97008 * 119.99655 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47552 * 59.99587 * 14 12 3 31 31 H 1.08998 * 109.47127 * 299.99670 * 14 12 3 32 32 H 1.08996 * 109.47334 * 59.99830 * 15 14 12 33 33 H 1.08998 * 109.46955 * 299.99934 * 15 14 12 34 34 H 1.08996 * 109.47199 * 59.99821 * 16 15 14 35 35 H 1.08997 * 109.46807 * 299.99667 * 16 15 14 36 36 H 1.08004 * 119.99010 * 0.04851 * 18 17 16 37 37 H 1.08003 * 120.01431 * 179.69507 * 19 18 17 38 38 H 1.08001 * 120.01428 * 180.02562 * 22 20 19 39 39 H 1.07999 * 119.98509 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3490 1.9913 -1.1823 5 1 2.0744 3.0218 -1.3534 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0498 1.9005 -3.9238 9 1 2.2585 3.1536 -4.0159 10 1 4.4487 2.1669 -4.3451 11 1 2.4530 0.8711 -4.8123 12 6 2.1427 2.0519 1.1624 13 8 2.5476 3.1953 1.1624 14 6 1.7798 1.3810 2.4621 15 6 2.0118 2.3535 3.6203 16 6 1.6427 1.6724 4.9397 17 6 1.8706 2.6305 6.0804 18 6 3.1012 2.6760 6.7087 19 6 3.3094 3.5495 7.7592 20 6 2.2886 4.3877 8.1746 21 9 2.4928 5.2463 9.1975 22 6 1.0584 4.3456 7.5405 23 6 0.8507 3.4669 6.4943 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 4.1593 -0.3122 -2.5281 30 1 2.4017 0.4966 2.6006 31 1 0.7304 1.0871 2.4386 32 1 1.3901 3.2380 3.4821 33 1 3.0613 2.6470 3.6435 34 1 2.2640 0.7877 5.0782 35 1 0.5932 1.3793 4.9161 36 1 3.8989 2.0256 6.3814 37 1 4.2693 3.5814 8.2532 38 1 0.2616 4.9992 7.8633 39 1 -0.1088 3.4336 5.9998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574820720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:56 Heat of formation + Delta-G solvation = -72.981484 kcal Electronic energy + Delta-G solvation = -20886.944390 eV Core-core repulsion = 17515.389550 eV Total energy + Delta-G solvation = -3371.554840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.98419 -39.35733 -38.51910 -35.17188 -34.32430 -32.07163 -31.24310 -30.60351 -29.39887 -26.86081 -24.70826 -23.16123 -22.62345 -21.97121 -20.80830 -18.65538 -17.76247 -16.74232 -16.51700 -15.94989 -15.68996 -15.48642 -15.17574 -14.67942 -14.28910 -13.96856 -13.74631 -13.56167 -13.12905 -13.01390 -12.85101 -12.66828 -12.04918 -11.91839 -11.73244 -11.39762 -11.22047 -11.10547 -11.04165 -10.94459 -10.74463 -10.49383 -10.30518 -10.20327 -10.02994 -9.22043 -8.90221 -8.60300 -8.31901 -7.38280 -6.29368 -3.97488 1.04424 1.12170 3.17286 3.27437 3.33717 3.47475 3.98637 4.16040 4.18808 4.59308 4.66052 4.76564 4.95185 5.04856 5.10865 5.17748 5.40646 5.47768 5.57356 5.74182 5.83932 5.87982 5.91565 5.97009 6.00341 6.05403 6.14179 6.17094 6.22441 6.36715 6.44168 6.53777 6.64367 6.72053 6.80648 6.88921 7.23554 7.61123 8.34164 8.56459 9.24530 9.44996 10.07992 10.75889 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.003069 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.853441 B = 9121.150616 C = 9427.850864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.445 5.445 4 C -0.308 4.308 5 H 0.087 0.913 6 C 0.037 3.963 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.461 3.539 13 O -0.582 6.582 14 C -0.135 4.135 15 C -0.093 4.093 16 C -0.083 4.083 17 C -0.081 4.081 18 C -0.088 4.088 19 C -0.152 4.152 20 C 0.084 3.916 21 F -0.145 7.145 22 C -0.152 4.152 23 C -0.089 4.089 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.266 0.734 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -0.804 15.341 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.165 5.165 4 C -0.436 4.436 5 H 0.105 0.895 6 C -0.167 4.167 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.250 3.750 13 O -0.466 6.466 14 C -0.176 4.176 15 C -0.131 4.131 16 C -0.121 4.121 17 C -0.081 4.081 18 C -0.106 4.106 19 C -0.170 4.170 20 C 0.065 3.935 21 F -0.124 7.124 22 C -0.171 4.171 23 C -0.107 4.107 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.078 -0.351 15.257 16.083 hybrid contribution 0.129 0.230 -0.702 0.750 sum -4.949 -0.121 14.555 15.374 Atomic orbital electron populations 1.22226 0.98342 1.00269 1.01499 1.21428 0.91512 0.85740 1.03368 1.43479 1.56322 1.11721 1.04960 1.19414 1.34606 0.98467 0.91094 0.89548 1.25411 0.94134 0.96593 1.00520 1.69935 1.29740 1.17650 1.33792 0.86036 0.78115 0.78996 0.82563 1.19224 1.20787 1.20670 1.20427 0.81735 0.87868 0.85015 1.90515 1.50129 1.18923 1.87004 1.21661 1.02157 0.99454 0.94303 1.21267 1.02874 0.98126 0.90877 1.20726 1.02410 0.96664 0.92260 1.20080 0.93510 0.97581 0.96917 1.20982 0.97057 0.98074 0.94516 1.21134 0.98959 0.97515 0.99429 1.17718 0.95325 0.92010 0.88416 1.91479 1.95594 1.68297 1.56982 1.21126 0.96279 1.01531 0.98147 1.20961 0.99541 0.94582 0.95615 0.92506 0.93176 0.93834 0.88016 0.93358 0.92416 0.90260 0.90515 0.91440 0.91297 0.90747 0.90840 0.84872 0.84916 0.84945 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.15 37.15 0.38 -2.50 16 2 C 0.10 2.20 5.41 -4.05 -0.02 2.18 16 3 N -0.45 -11.21 2.50 -114.82 -0.29 -11.50 16 4 C -0.31 -8.58 8.84 -14.93 -0.13 -8.71 16 5 H 0.09 2.53 7.82 -52.48 -0.41 2.12 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -23.66 11.61 55.50 0.64 -23.01 16 8 Si 0.92 20.71 29.59 -169.99 -5.03 15.68 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.46 11.15 7.59 -10.99 -0.08 11.07 16 13 O -0.58 -16.28 15.89 5.55 0.09 -16.20 16 14 C -0.14 -2.37 4.31 -27.88 -0.12 -2.49 16 15 C -0.09 -1.45 4.49 -26.73 -0.12 -1.57 16 16 C -0.08 -0.95 5.34 -27.88 -0.15 -1.10 16 17 C -0.08 -0.93 5.13 -104.62 -0.54 -1.46 16 18 C -0.09 -0.97 9.70 -39.59 -0.38 -1.36 16 19 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 20 C 0.08 0.98 7.30 -39.42 -0.29 0.70 16 21 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 22 C -0.15 -1.63 10.03 -39.51 -0.40 -2.03 16 23 C -0.09 -0.96 9.70 -39.59 -0.38 -1.34 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 27 H 0.10 2.41 5.76 -51.93 -0.30 2.11 16 28 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 31 H 0.08 1.18 6.54 -51.93 -0.34 0.84 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -31.58 331.12 -7.75 -39.33 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.47 Total: 2.17 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.72 Total: -9.75 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.36 Total: -34.51 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.20 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.58 -7.75 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574820720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.652 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds