Wall clock time and date at job start Tue Mar 31 2020 00:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47665 * 2 1 4 4 C 1.37097 * 120.00251 * 264.76946 * 3 2 1 5 5 H 1.08003 * 119.99572 * 138.84811 * 4 3 2 6 6 C 1.38946 * 120.00006 * 318.85176 * 4 3 2 7 7 N 1.31405 * 119.99992 * 341.82576 * 6 4 3 8 8 Si 1.86805 * 119.99518 * 161.82380 * 6 4 3 9 9 H 1.48496 * 109.47467 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47042 * 120.00427 * 8 6 4 11 11 H 1.48497 * 109.46940 * 239.99639 * 8 6 4 12 12 C 1.34780 * 119.99638 * 84.76776 * 3 2 1 13 13 O 1.21294 * 119.99608 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00152 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.47172 * 179.97438 * 14 12 3 16 16 C 1.53002 * 109.46913 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.46805 * 180.02562 * 16 15 14 18 18 C 1.38247 * 119.97208 * 270.27474 * 17 16 15 19 19 C 1.38194 * 120.02502 * 180.32094 * 18 17 16 20 20 C 1.38461 * 119.97710 * 359.42646 * 19 18 17 21 21 F 1.35096 * 120.03231 * 180.29623 * 20 19 18 22 22 C 1.38465 * 119.94460 * 0.27340 * 20 19 18 23 23 C 1.38197 * 119.97275 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47177 * 59.99667 * 1 2 3 25 25 H 1.08997 * 109.47709 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47109 * 299.99863 * 1 2 3 27 27 H 1.09006 * 109.47109 * 240.00137 * 2 1 3 28 28 H 1.08998 * 109.47152 * 120.00885 * 2 1 3 29 29 H 0.97008 * 119.99655 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47552 * 59.99587 * 14 12 3 31 31 H 1.08998 * 109.47127 * 299.99670 * 14 12 3 32 32 H 1.08996 * 109.47334 * 59.99830 * 15 14 12 33 33 H 1.08998 * 109.46955 * 299.99934 * 15 14 12 34 34 H 1.08996 * 109.47199 * 59.99821 * 16 15 14 35 35 H 1.08997 * 109.46807 * 299.99667 * 16 15 14 36 36 H 1.08004 * 119.99010 * 0.04851 * 18 17 16 37 37 H 1.08003 * 120.01431 * 179.69507 * 19 18 17 38 38 H 1.08001 * 120.01428 * 180.02562 * 22 20 19 39 39 H 1.07999 * 119.98509 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3490 1.9913 -1.1823 5 1 2.0744 3.0218 -1.3534 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0498 1.9005 -3.9238 9 1 2.2585 3.1536 -4.0159 10 1 4.4487 2.1669 -4.3451 11 1 2.4530 0.8711 -4.8123 12 6 2.1427 2.0519 1.1624 13 8 2.5476 3.1953 1.1624 14 6 1.7798 1.3810 2.4621 15 6 2.0118 2.3535 3.6203 16 6 1.6427 1.6724 4.9397 17 6 1.8706 2.6305 6.0804 18 6 3.1012 2.6760 6.7087 19 6 3.3094 3.5495 7.7592 20 6 2.2886 4.3877 8.1746 21 9 2.4928 5.2463 9.1975 22 6 1.0584 4.3456 7.5405 23 6 0.8507 3.4669 6.4943 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 4.1593 -0.3122 -2.5281 30 1 2.4017 0.4966 2.6006 31 1 0.7304 1.0871 2.4386 32 1 1.3901 3.2380 3.4821 33 1 3.0613 2.6470 3.6435 34 1 2.2640 0.7877 5.0782 35 1 0.5932 1.3793 4.9161 36 1 3.8989 2.0256 6.3814 37 1 4.2693 3.5814 8.2532 38 1 0.2616 4.9992 7.8633 39 1 -0.1088 3.4336 5.9998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574820720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:55 Heat of formation + Delta-G solvation = -89.598164 kcal Electronic energy + Delta-G solvation = -20887.664943 eV Core-core repulsion = 17515.389550 eV Total energy + Delta-G solvation = -3372.275393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.88389 -40.52996 -40.01833 -36.95189 -35.61883 -33.99289 -32.05086 -31.78645 -31.07626 -28.19658 -26.42179 -24.06404 -23.97540 -23.36133 -21.80849 -20.42043 -18.69600 -18.60093 -17.63586 -17.42024 -16.99316 -16.58987 -16.48381 -16.21022 -15.87019 -15.09176 -14.96914 -14.48351 -14.44794 -14.38744 -14.15082 -14.00861 -13.53965 -13.43968 -13.05532 -12.84493 -12.69004 -12.62060 -12.36259 -12.26963 -12.04060 -11.98455 -11.89795 -11.76553 -11.44138 -10.86211 -10.27454 -10.03326 -9.47015 -9.35375 -8.31973 -6.08135 0.17929 0.31036 1.36429 1.40793 1.54175 2.13603 2.31456 2.62588 3.03590 3.16811 3.32228 3.80196 3.81934 3.99973 4.05897 4.15854 4.35788 4.39383 4.40151 4.41141 4.65108 4.70226 4.74150 4.80790 4.94625 4.96302 5.02105 5.10963 5.16751 5.18693 5.27070 5.31402 5.35646 5.48075 5.50249 5.60423 5.67707 5.97777 6.26976 6.60682 7.23575 7.53788 8.15002 8.71576 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.003069 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.853441 B = 9121.150616 C = 9427.850864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.459 5.459 4 C -0.342 4.342 5 H 0.057 0.943 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.978 3.022 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.443 3.557 13 O -0.634 6.634 14 C -0.121 4.121 15 C -0.086 4.086 16 C -0.070 4.070 17 C -0.093 4.093 18 C -0.096 4.096 19 C -0.158 4.158 20 C 0.066 3.934 21 F -0.151 7.151 22 C -0.157 4.157 23 C -0.093 4.093 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.272 0.728 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 -2.361 15.912 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.179 5.179 4 C -0.471 4.471 5 H 0.075 0.925 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.802 3.198 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.234 3.766 13 O -0.522 6.522 14 C -0.161 4.161 15 C -0.124 4.124 16 C -0.108 4.108 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.176 4.176 20 C 0.047 3.953 21 F -0.130 7.130 22 C -0.175 4.175 23 C -0.111 4.111 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.175 -1.951 15.835 17.108 hybrid contribution 0.505 0.730 -0.867 1.241 sum -5.670 -1.221 14.968 16.052 Atomic orbital electron populations 1.22116 0.95215 1.02517 1.01379 1.21556 0.94044 0.83442 1.03104 1.43807 1.56345 1.13086 1.04626 1.19351 1.36411 0.97967 0.93336 0.92542 1.26115 0.93252 0.96678 1.03828 1.69993 1.29643 1.18208 1.35083 0.85117 0.77994 0.78659 0.78006 1.19692 1.20582 1.18726 1.21601 0.80648 0.87472 0.86916 1.90471 1.52314 1.21348 1.88034 1.21629 1.04097 0.99588 0.90771 1.21162 1.01043 0.97561 0.92605 1.20618 1.04055 0.96586 0.89498 1.20210 0.93939 0.98024 0.97194 1.21215 0.97439 0.98280 0.94474 1.21351 0.99533 0.97254 0.99496 1.17990 0.96122 0.92423 0.88721 1.91459 1.95682 1.68561 1.57309 1.21370 0.96465 1.01703 0.97980 1.21223 1.00258 0.94145 0.95509 0.94402 0.89651 0.92195 0.90680 0.91121 0.91843 0.88481 0.87519 0.93156 0.93815 0.89156 0.88628 0.83616 0.83500 0.83294 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 10.15 71.98 0.73 -4.26 16 2 C 0.10 4.20 5.41 86.38 0.47 4.66 16 3 N -0.46 -23.36 2.50 -635.55 -1.59 -24.95 16 4 C -0.34 -19.64 8.84 84.04 0.74 -18.90 16 5 H 0.06 3.49 7.82 -2.91 -0.02 3.47 16 6 C 0.00 0.20 4.95 84.93 0.42 0.62 16 7 N -0.89 -48.35 11.61 21.66 0.25 -48.10 16 8 Si 0.98 42.80 29.59 68.60 2.03 44.83 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 12 C 0.44 21.64 7.59 87.66 0.67 22.30 16 13 O -0.63 -36.84 15.89 -3.07 -0.05 -36.89 16 14 C -0.12 -4.00 4.31 29.85 0.13 -3.87 16 15 C -0.09 -2.56 4.49 30.60 0.14 -2.43 16 16 C -0.07 -1.41 5.34 29.85 0.16 -1.25 16 17 C -0.09 -1.97 5.13 -19.86 -0.10 -2.07 16 18 C -0.10 -1.98 9.70 22.26 0.22 -1.76 16 19 C -0.16 -3.28 10.03 22.31 0.22 -3.05 16 20 C 0.07 1.49 7.30 22.38 0.16 1.66 16 21 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 22 C -0.16 -3.15 10.03 22.31 0.22 -2.93 16 23 C -0.09 -1.84 9.70 22.26 0.22 -1.63 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.73 6.60 -2.38 -0.02 1.71 16 27 H 0.07 3.52 5.76 -2.38 -0.01 3.50 16 28 H 0.07 2.54 6.66 -2.39 -0.02 2.52 16 29 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 30 H 0.10 2.89 7.41 -2.39 -0.02 2.87 16 31 H 0.11 2.90 6.54 -2.39 -0.02 2.88 16 32 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 34 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 35 H 0.10 1.53 8.08 -2.39 -0.02 1.51 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.12 331.12 6.85 -64.27 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.04 Total: 16.57 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.39 Total: -12.92 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.34 Total: -73.05 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.05 Total: -36.89 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.12 6.85 -64.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574820720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.323 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds