Wall clock time and date at job start Tue Mar 31 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34143 * 118.70597 * 2 1 4 4 O 1.21229 * 119.35589 * 359.48119 * 3 2 1 5 5 C 1.50582 * 121.27748 * 179.50038 * 3 2 1 6 6 C 1.53214 * 109.16906 * 29.07872 * 5 3 2 7 7 C 1.53243 * 108.57632 * 304.39625 * 6 5 3 8 8 H 1.09000 * 109.57367 * 295.66015 * 7 6 5 9 9 N 1.46909 * 109.52133 * 175.50539 * 7 6 5 10 10 C 1.46899 * 110.99838 * 155.31374 * 9 7 6 11 11 C 1.52999 * 109.46893 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47188 * 55.00323 * 11 10 9 13 13 C 1.47204 * 109.47104 * 295.00043 * 11 10 9 14 14 N 6.08492 * 102.56537 * 204.45919 * 2 1 3 15 15 C 1.53006 * 109.46811 * 175.00079 * 11 10 9 16 16 C 1.50699 * 109.46866 * 184.99981 * 15 11 10 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 11 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 11 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47141 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47494 * 119.99680 * 20 18 16 23 23 H 1.48505 * 109.47047 * 239.99860 * 20 18 16 24 24 C 1.34139 * 118.70347 * 180.02562 * 2 1 3 25 25 O 1.21222 * 119.36102 * 0.51566 * 24 2 1 26 26 H 1.09001 * 109.46791 * 269.97656 * 1 2 3 27 27 H 1.08998 * 109.47026 * 29.97724 * 1 2 3 28 28 H 1.08999 * 109.47463 * 149.97818 * 1 2 3 29 29 H 1.09007 * 109.51998 * 148.97750 * 5 3 2 30 30 H 1.09003 * 109.52527 * 269.10023 * 5 3 2 31 31 H 1.08996 * 109.63012 * 184.65998 * 6 5 3 32 32 H 1.09005 * 109.60181 * 64.11252 * 6 5 3 33 33 H 1.00893 * 110.99817 * 279.26777 * 9 7 6 34 34 H 1.09003 * 109.47265 * 60.00367 * 10 9 7 35 35 H 1.08995 * 109.47286 * 300.00219 * 10 9 7 36 36 H 1.08993 * 109.46955 * 305.00200 * 15 11 10 37 37 H 1.09000 * 109.47050 * 65.00029 * 15 11 10 38 38 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1094 1.1766 0.0000 4 8 1.4681 2.2053 -0.0096 5 6 3.6136 1.2441 0.0112 6 6 4.1783 0.0003 -0.6826 7 6 3.6136 -1.2442 0.0108 8 1 3.9690 -1.2813 1.0405 9 7 4.0562 -2.4483 -0.7050 10 6 4.0604 -3.6176 0.1842 11 6 4.5264 -4.8491 -0.5949 12 1 5.4956 -4.6458 -1.0500 13 6 3.5464 -5.1637 -1.6474 14 7 2.7888 -5.4062 -2.4591 15 6 4.6503 -6.0392 0.3588 16 6 5.2256 -7.2187 -0.3819 17 1 5.4772 -7.1287 -1.4284 18 6 5.4297 -8.4131 0.2759 19 7 5.1228 -8.5228 1.5501 20 14 6.1435 -9.8750 -0.6420 21 1 6.4016 -9.4947 -2.0542 22 1 7.4167 -10.2891 0.0002 23 1 5.1789 -11.0034 -0.6021 24 6 2.1093 -1.1766 -0.0005 25 8 1.4681 -2.2053 -0.0105 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 3.9420 2.1378 -0.5195 30 1 3.9690 1.2809 1.0410 31 1 5.2656 0.0002 -0.6062 32 1 3.8824 0.0007 -1.7317 33 1 3.4846 -2.6154 -1.5194 34 1 3.0534 -3.7879 0.5653 35 1 4.7387 -3.4375 1.0181 36 1 5.3077 -5.7742 1.1868 37 1 3.6649 -6.2986 0.7459 38 1 5.2667 -9.3629 2.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581602109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:06 Heat of formation + Delta-G solvation = -49.674080 kcal Electronic energy + Delta-G solvation = -21505.111318 eV Core-core repulsion = 18154.487125 eV Total energy + Delta-G solvation = -3350.624193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95776 -39.31252 -37.44193 -36.04568 -35.45807 -34.05960 -33.08012 -31.30483 -28.09027 -27.81886 -25.84175 -23.59224 -23.07064 -22.65379 -21.77198 -18.94207 -17.86848 -17.41540 -16.80931 -16.69833 -16.53791 -15.64759 -15.25901 -15.10023 -14.66801 -14.48604 -14.05072 -13.38950 -13.18925 -13.14354 -13.05251 -12.80541 -12.60897 -12.48324 -12.23181 -12.00774 -11.77715 -11.46218 -11.25367 -11.06240 -10.75331 -10.67247 -10.52108 -10.50197 -10.29473 -9.99639 -9.57256 -9.22894 -8.64070 -8.45993 -6.10024 -4.13076 1.23028 2.25865 2.47575 3.28267 3.36634 3.41027 3.56155 3.60358 3.63459 3.83122 4.24497 4.30044 4.40845 4.65642 4.76889 4.80138 4.90549 5.02275 5.10452 5.16902 5.26873 5.28179 5.40906 5.47015 5.53391 5.65744 5.79970 6.05626 6.26035 6.51358 6.62317 6.79121 7.07905 7.13746 7.42093 7.47759 7.53337 7.85252 8.22364 8.42667 8.91721 9.52463 11.00936 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.003454 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.113865 B = 8104.756872 C = 8270.685548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.568 5.568 3 C 0.521 3.479 4 O -0.508 6.508 5 C -0.141 4.141 6 C -0.112 4.112 7 C 0.070 3.930 8 H 0.126 0.874 9 N -0.659 5.659 10 C 0.057 3.943 11 C 0.009 3.991 12 H 0.111 0.889 13 C 0.239 3.761 14 N -0.473 5.473 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 C 0.485 3.515 25 O -0.486 6.486 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.347 0.653 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.025 0.975 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 20.839 0.171 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.312 5.312 3 C 0.312 3.688 4 O -0.381 6.381 5 C -0.181 4.181 6 C -0.150 4.150 7 C -0.045 4.045 8 H 0.144 0.856 9 N -0.289 5.289 10 C -0.072 4.072 11 C -0.013 4.013 12 H 0.129 0.871 13 C -0.078 4.078 14 N -0.150 5.150 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 C 0.272 3.728 25 O -0.356 6.356 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.210 20.432 -0.845 20.569 hybrid contribution -0.486 -1.111 0.020 1.213 sum -2.696 19.322 -0.825 19.526 Atomic orbital electron populations 1.21934 0.77955 1.04692 1.03655 1.46679 1.10070 1.07983 1.66505 1.21119 0.91653 0.82330 0.73730 1.90734 1.68905 1.33150 1.45300 1.21967 0.89328 1.01694 1.05136 1.21751 1.03390 0.89791 1.00092 1.21985 0.86528 0.93967 1.01974 0.85643 1.60931 1.55844 1.02746 1.09350 1.22325 1.01895 0.87715 0.95315 1.19289 0.93897 0.96566 0.91502 0.87103 1.29279 0.93412 0.91693 0.93389 1.81048 1.11502 1.10172 1.12285 1.19168 0.98522 0.89523 0.93438 1.21177 1.42513 0.96037 0.96628 0.92419 1.24955 0.95423 0.98776 0.94853 1.69949 1.47911 1.26150 1.08997 0.86535 0.78784 0.82635 0.80117 1.19667 1.20825 1.21023 1.22621 0.93056 0.82671 0.74450 1.90806 1.68404 1.32789 1.43611 0.91187 0.89437 0.89325 0.86542 0.86859 0.87498 0.90315 0.83420 0.92669 0.88748 0.94166 0.95648 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.00 59.85 0.60 1.19 16 2 N -0.57 -5.88 2.93 -123.17 -0.36 -6.24 16 3 C 0.52 4.87 7.48 -11.33 -0.08 4.79 16 4 O -0.51 -6.24 16.44 5.60 0.09 -6.15 16 5 C -0.14 -0.75 6.07 -27.83 -0.17 -0.92 16 6 C -0.11 -0.66 5.69 -26.50 -0.15 -0.81 16 7 C 0.07 0.62 2.72 -68.79 -0.19 0.43 16 8 H 0.13 0.89 7.80 -51.93 -0.41 0.49 16 9 N -0.66 -7.67 6.11 -107.87 -0.66 -8.33 16 10 C 0.06 0.80 4.78 -3.82 -0.02 0.79 16 11 C 0.01 0.17 2.42 -93.40 -0.23 -0.06 16 12 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 13 C 0.24 4.90 12.98 -20.74 -0.27 4.63 16 14 N -0.47 -10.58 18.54 42.17 0.78 -9.79 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 16 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 17 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.48 5.55 7.07 -11.33 -0.08 5.47 16 25 O -0.49 -7.50 14.30 5.61 0.08 -7.42 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.82 7.28 -51.93 -0.38 0.44 16 28 H 0.09 0.94 7.28 -51.93 -0.38 0.56 16 29 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.35 4.62 7.40 -39.30 -0.29 4.33 16 34 H 0.05 0.89 6.70 -51.93 -0.35 0.54 16 35 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -33.46 325.71 -5.68 -39.13 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.13 Total: -1.16 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.10 Total: 3.54 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.50 Total: -49.06 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.17 Total: -13.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.46 -5.68 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581602109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.540 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds