Wall clock time and date at job start Tue Mar 31 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34143 * 118.70597 * 2 1 4 4 O 1.21229 * 119.35589 * 359.48119 * 3 2 1 5 5 C 1.50582 * 121.27748 * 179.50038 * 3 2 1 6 6 C 1.53214 * 109.16906 * 29.07872 * 5 3 2 7 7 C 1.53243 * 108.57632 * 304.39625 * 6 5 3 8 8 H 1.09000 * 109.57367 * 295.66015 * 7 6 5 9 9 N 1.46909 * 109.52133 * 175.50539 * 7 6 5 10 10 C 1.46899 * 110.99838 * 155.31374 * 9 7 6 11 11 C 1.52999 * 109.46893 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47188 * 55.00323 * 11 10 9 13 13 C 1.47204 * 109.47104 * 295.00043 * 11 10 9 14 14 N 6.08492 * 102.56537 * 204.45919 * 2 1 3 15 15 C 1.53006 * 109.46811 * 175.00079 * 11 10 9 16 16 C 1.50699 * 109.46866 * 184.99981 * 15 11 10 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 11 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 11 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47141 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47494 * 119.99680 * 20 18 16 23 23 H 1.48505 * 109.47047 * 239.99860 * 20 18 16 24 24 C 1.34139 * 118.70347 * 180.02562 * 2 1 3 25 25 O 1.21222 * 119.36102 * 0.51566 * 24 2 1 26 26 H 1.09001 * 109.46791 * 269.97656 * 1 2 3 27 27 H 1.08998 * 109.47026 * 29.97724 * 1 2 3 28 28 H 1.08999 * 109.47463 * 149.97818 * 1 2 3 29 29 H 1.09007 * 109.51998 * 148.97750 * 5 3 2 30 30 H 1.09003 * 109.52527 * 269.10023 * 5 3 2 31 31 H 1.08996 * 109.63012 * 184.65998 * 6 5 3 32 32 H 1.09005 * 109.60181 * 64.11252 * 6 5 3 33 33 H 1.00893 * 110.99817 * 279.26777 * 9 7 6 34 34 H 1.09003 * 109.47265 * 60.00367 * 10 9 7 35 35 H 1.08995 * 109.47286 * 300.00219 * 10 9 7 36 36 H 1.08993 * 109.46955 * 305.00200 * 15 11 10 37 37 H 1.09000 * 109.47050 * 65.00029 * 15 11 10 38 38 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1094 1.1766 0.0000 4 8 1.4681 2.2053 -0.0096 5 6 3.6136 1.2441 0.0112 6 6 4.1783 0.0003 -0.6826 7 6 3.6136 -1.2442 0.0108 8 1 3.9690 -1.2813 1.0405 9 7 4.0562 -2.4483 -0.7050 10 6 4.0604 -3.6176 0.1842 11 6 4.5264 -4.8491 -0.5949 12 1 5.4956 -4.6458 -1.0500 13 6 3.5464 -5.1637 -1.6474 14 7 2.7888 -5.4062 -2.4591 15 6 4.6503 -6.0392 0.3588 16 6 5.2256 -7.2187 -0.3819 17 1 5.4772 -7.1287 -1.4284 18 6 5.4297 -8.4131 0.2759 19 7 5.1228 -8.5228 1.5501 20 14 6.1435 -9.8750 -0.6420 21 1 6.4016 -9.4947 -2.0542 22 1 7.4167 -10.2891 0.0002 23 1 5.1789 -11.0034 -0.6021 24 6 2.1093 -1.1766 -0.0005 25 8 1.4681 -2.2053 -0.0105 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 3.9420 2.1378 -0.5195 30 1 3.9690 1.2809 1.0410 31 1 5.2656 0.0002 -0.6062 32 1 3.8824 0.0007 -1.7317 33 1 3.4846 -2.6154 -1.5194 34 1 3.0534 -3.7879 0.5653 35 1 4.7387 -3.4375 1.0181 36 1 5.3077 -5.7742 1.1868 37 1 3.6649 -6.2986 0.7459 38 1 5.2667 -9.3629 2.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581602109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:06 Heat of formation + Delta-G solvation = -73.772089 kcal Electronic energy + Delta-G solvation = -21506.156286 eV Core-core repulsion = 18154.487125 eV Total energy + Delta-G solvation = -3351.669161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.76758 -40.20930 -38.75649 -37.10023 -36.44150 -35.62337 -34.49954 -32.72796 -29.23236 -28.67363 -27.25009 -24.59021 -24.00683 -23.66356 -23.37905 -19.69939 -18.69575 -18.49883 -18.25073 -18.13773 -17.61265 -16.77827 -16.54808 -15.99145 -15.87132 -15.33911 -15.25496 -14.73180 -14.42581 -14.32561 -14.11965 -13.95921 -13.73985 -13.64038 -13.40729 -13.22953 -13.07480 -12.78832 -12.68973 -12.48180 -12.27203 -12.10394 -11.92490 -11.57067 -11.38084 -11.21975 -11.10551 -10.87581 -10.54228 -9.63099 -8.18244 -6.26148 0.41784 1.40019 1.43333 1.50025 1.53547 1.70132 1.96868 1.97160 2.42568 2.88560 2.93979 3.17166 3.27551 3.62832 3.75327 4.05212 4.14157 4.21269 4.23996 4.29905 4.36732 4.46453 4.51024 4.66521 4.73087 4.89161 4.96833 5.00411 5.07855 5.26371 5.49398 5.63033 5.73470 5.81635 5.87678 6.04186 6.21637 6.36407 6.66995 6.77322 6.89400 7.42477 8.92918 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.003454 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.113865 B = 8104.756872 C = 8270.685548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.572 5.572 3 C 0.519 3.481 4 O -0.540 6.540 5 C -0.129 4.129 6 C -0.101 4.101 7 C 0.070 3.930 8 H 0.153 0.847 9 N -0.649 5.649 10 C 0.069 3.931 11 C 0.020 3.980 12 H 0.134 0.866 13 C 0.249 3.751 14 N -0.511 5.511 15 C 0.038 3.962 16 C -0.537 4.537 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.948 3.052 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.288 1.288 24 C 0.486 3.514 25 O -0.535 6.535 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.336 0.664 34 H 0.032 0.968 35 H 0.123 0.877 36 H 0.043 0.957 37 H -0.007 1.007 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 22.456 0.197 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.315 5.315 3 C 0.312 3.688 4 O -0.415 6.415 5 C -0.169 4.169 6 C -0.139 4.139 7 C -0.044 4.044 8 H 0.170 0.830 9 N -0.278 5.278 10 C -0.061 4.061 11 C -0.002 4.002 12 H 0.151 0.849 13 C -0.067 4.067 14 N -0.188 5.188 15 C -0.001 4.001 16 C -0.575 4.575 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.774 3.226 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.215 1.215 24 C 0.275 3.725 25 O -0.409 6.409 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.050 0.950 35 H 0.141 0.859 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.018 22.084 -0.825 22.099 hybrid contribution -1.230 -1.566 0.021 1.992 sum -1.212 20.518 -0.804 20.569 Atomic orbital electron populations 1.21922 0.78495 1.04187 1.03924 1.46824 1.10156 1.08408 1.66114 1.22013 0.93376 0.81175 0.72229 1.90727 1.69998 1.33992 1.46829 1.22084 0.85515 1.02087 1.07183 1.21748 1.04758 0.88033 0.99336 1.22306 0.84511 0.93919 1.03661 0.82994 1.60952 1.55530 1.02652 1.08636 1.22166 1.01115 0.87201 0.95645 1.19281 0.94467 0.96326 0.90119 0.84885 1.29828 0.93024 0.90683 0.93119 1.81042 1.12777 1.11279 1.13717 1.18994 0.96364 0.90568 0.94179 1.21593 1.41864 0.97321 0.96716 0.92665 1.25715 0.96080 1.01436 0.95613 1.70042 1.49245 1.26863 1.10255 0.85644 0.78316 0.79449 0.79151 1.19288 1.19631 1.21468 1.23194 0.94186 0.82069 0.73002 1.90798 1.69572 1.34403 1.46086 0.90617 0.89074 0.90599 0.84516 0.83903 0.84683 0.90927 0.84625 0.94974 0.85895 0.93879 0.98821 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 10.00 127.77 1.28 2.43 16 2 N -0.57 -11.39 2.93 -781.14 -2.29 -13.68 16 3 C 0.52 8.68 7.48 87.72 0.66 9.34 16 4 O -0.54 -12.60 16.44 -2.87 -0.05 -12.64 16 5 C -0.13 -0.83 6.07 29.88 0.18 -0.65 16 6 C -0.10 -0.77 5.69 30.75 0.18 -0.60 16 7 C 0.07 1.03 2.72 44.21 0.12 1.15 16 8 H 0.15 1.51 7.80 -2.39 -0.02 1.49 16 9 N -0.65 -13.62 6.11 -495.20 -3.03 -16.65 16 10 C 0.07 1.82 4.78 86.30 0.41 2.23 16 11 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 12 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 13 C 0.25 10.19 12.98 89.44 1.16 11.36 16 14 N -0.51 -23.05 18.54 20.01 0.37 -22.68 16 15 C 0.04 1.72 4.42 29.85 0.13 1.85 16 16 C -0.54 -28.21 8.60 25.60 0.22 -27.99 16 17 H 0.06 2.87 7.59 -2.91 -0.02 2.85 16 18 C 0.01 0.56 5.46 84.65 0.46 1.03 16 19 N -0.92 -52.95 13.29 21.45 0.28 -52.67 16 20 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 C 0.49 10.71 7.07 87.72 0.62 11.33 16 25 O -0.53 -16.86 14.30 -2.85 -0.04 -16.90 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.75 7.28 -2.39 -0.02 1.73 16 28 H 0.08 1.72 7.28 -2.39 -0.02 1.71 16 29 H 0.14 0.47 8.14 -2.38 -0.02 0.46 16 30 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.34 8.55 7.40 -89.70 -0.66 7.88 16 34 H 0.03 1.02 6.70 -2.39 -0.02 1.00 16 35 H 0.12 2.59 8.06 -2.39 -0.02 2.57 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 38 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -74.28 325.71 3.09 -71.19 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.42 Total: 6.57 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.39 Total: 12.13 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.66 Total: -105.67 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.09 Total: -29.55 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.28 3.09 -71.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581602109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.585 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds