Wall clock time and date at job start Tue Mar 31 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 120.00098 * 2 1 4 4 O 1.21289 * 120.00219 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00021 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47101 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47168 * 180.02562 * 6 5 3 8 8 C 1.52991 * 109.47114 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47047 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00157 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00084 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00084 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00292 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46896 * 59.99848 * 13 11 9 15 15 H 1.48495 * 109.47211 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46991 * 300.00233 * 13 11 9 17 17 C 1.40047 * 119.99682 * 179.97438 * 2 1 3 18 18 C 1.38808 * 120.07824 * 90.00544 * 17 2 1 19 19 C 1.38138 * 119.95415 * 179.97438 * 18 17 2 20 20 C 1.38278 * 120.11403 * 359.97438 * 19 18 17 21 21 C 1.38265 * 120.15797 * 359.97438 * 20 19 18 22 22 C 1.38309 * 120.04245 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.05832 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47396 * 270.00429 * 1 2 3 25 25 H 1.09005 * 109.46927 * 30.00539 * 1 2 3 26 26 H 1.09000 * 109.46801 * 149.99951 * 1 2 3 27 27 H 1.08994 * 109.47189 * 300.00163 * 5 3 2 28 28 H 1.09000 * 109.46855 * 60.00445 * 5 3 2 29 29 H 1.09006 * 109.46841 * 299.99856 * 6 5 3 30 30 H 1.08998 * 109.46854 * 59.99886 * 6 5 3 31 31 H 1.09011 * 109.46662 * 299.99935 * 7 6 5 32 32 H 1.08994 * 109.47494 * 59.99224 * 7 6 5 33 33 H 1.09004 * 109.47315 * 299.99122 * 8 7 6 34 34 H 1.08996 * 109.47995 * 59.99632 * 8 7 6 35 35 H 0.97002 * 120.00045 * 179.97438 * 12 11 9 36 36 H 1.08003 * 120.01766 * 359.97438 * 18 17 2 37 37 H 1.07997 * 119.94486 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.92242 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.98229 * 179.75007 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 1.6147 4.9602 -0.0011 8 6 2.6090 6.1231 -0.0022 9 6 1.8555 7.4282 -0.0028 10 1 0.7755 7.4283 -0.0028 11 6 2.5449 8.6222 -0.0033 12 7 3.8600 8.6223 -0.0038 13 14 1.6109 10.2401 -0.0033 14 1 0.7576 10.3190 1.2095 15 1 2.5759 11.3687 -0.0046 16 1 0.7567 10.3185 -1.2155 17 6 2.1652 -1.2129 0.0005 18 6 2.5131 -1.8159 -1.2004 19 6 3.2042 -3.0119 -1.1968 20 6 3.5506 -3.6095 0.0011 21 6 3.2073 -3.0125 1.2000 22 6 2.5154 -1.8149 1.2041 23 9 2.1794 -1.2315 2.3754 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.7591 2.5298 -0.8908 28 1 0.7585 2.5302 0.8892 29 1 3.0064 3.5778 0.8890 30 1 3.0063 3.5770 -0.8910 31 1 0.9878 5.0178 -0.8910 32 1 0.9883 5.0181 0.8890 33 1 3.2362 6.0658 0.8874 34 1 3.2351 6.0651 -0.8925 35 1 4.3450 9.4623 -0.0046 36 1 2.2436 -1.3501 -2.1368 37 1 3.4744 -3.4811 -2.1312 38 1 4.0912 -4.5444 0.0002 39 1 3.4758 -3.4837 2.1339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588903602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:11 Heat of formation + Delta-G solvation = -69.196067 kcal Electronic energy + Delta-G solvation = -20838.463711 eV Core-core repulsion = 17467.073019 eV Total energy + Delta-G solvation = -3371.390692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.08120 -40.50545 -38.70210 -35.74448 -34.90220 -32.65332 -31.12574 -30.67136 -29.34700 -26.92903 -25.75579 -23.51064 -23.03689 -21.86235 -20.03942 -19.50945 -17.95915 -17.15500 -16.90775 -16.73116 -16.13200 -15.65352 -15.60615 -15.21651 -14.46924 -14.38568 -14.27125 -13.67360 -13.43355 -13.20423 -12.86265 -12.64744 -12.47565 -12.33973 -12.13210 -11.68372 -11.64166 -11.56375 -10.95781 -10.52812 -10.51605 -10.39275 -9.90039 -9.59494 -9.36704 -9.21124 -9.11822 -9.01742 -8.93728 -8.28577 -5.93378 -3.96038 0.75132 0.85867 2.58858 2.70199 3.20500 3.36502 3.40822 3.43051 3.93961 4.43309 4.50017 4.59059 4.66717 4.79916 4.88613 4.95525 5.12431 5.20029 5.28987 5.36440 5.41067 5.42106 5.65899 5.74156 5.82351 5.91132 6.00326 6.14241 6.19639 6.30258 6.54209 6.70332 6.84825 7.00290 7.10657 7.22612 7.75676 7.91978 8.07923 8.13464 8.49540 9.11499 9.67452 11.17952 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.002752 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.927256 B =10173.574116 C =10265.381128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.587 5.587 3 C 0.517 3.483 4 O -0.519 6.519 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.109 4.109 8 C 0.020 3.980 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.110 3.890 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.089 4.089 21 C -0.151 4.151 22 C 0.106 3.894 23 F -0.132 7.132 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -27.350 -1.232 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.321 5.321 3 C 0.307 3.693 4 O -0.393 6.393 5 C -0.173 4.173 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.018 3.982 18 C -0.102 4.102 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.170 4.170 22 C 0.086 3.914 23 F -0.111 7.111 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.786 -27.147 -1.182 27.782 hybrid contribution -0.591 0.995 0.272 1.189 sum -6.377 -26.152 -0.910 26.934 Atomic orbital electron populations 1.21918 0.77920 1.03764 1.02551 1.45510 1.07107 1.03420 1.76022 1.21353 0.88335 0.85002 0.74616 1.90727 1.14138 1.87006 1.47383 1.21832 1.00127 0.91280 1.04080 1.21490 0.97040 0.92692 1.03044 1.21643 0.99076 0.93883 1.00096 1.19089 0.94054 0.91235 0.97325 1.21246 0.92941 0.91206 1.50528 0.92799 1.25042 0.94839 0.99216 0.95461 1.69966 1.06056 1.26619 1.50847 0.86670 0.79572 0.83261 0.78541 1.20278 1.21323 1.20290 1.17578 0.99973 0.88713 0.91895 1.21286 0.96794 0.95058 0.97043 1.21124 0.99005 0.95479 0.98692 1.21074 0.98350 0.99865 0.91402 1.21114 1.00787 0.94862 1.00252 1.18074 0.99214 0.93215 0.80935 1.91511 1.90287 1.83847 1.45423 0.92085 0.89741 0.90942 0.88842 0.88845 0.91751 0.91741 0.93443 0.93420 0.96585 0.96591 0.92985 0.84800 0.84846 0.84711 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.26 16 2 N -0.59 -7.19 2.74 -120.75 -0.33 -7.52 16 3 C 0.52 7.95 7.64 -10.99 -0.08 7.87 16 4 O -0.52 -10.21 15.96 5.55 0.09 -10.12 16 5 C -0.13 -1.86 4.25 -27.88 -0.12 -1.98 16 6 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 7 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 8 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 9 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.11 1.33 4.47 -83.59 -0.37 0.95 16 18 C -0.08 -0.82 9.97 -39.41 -0.39 -1.21 16 19 C -0.12 -0.96 10.04 -39.60 -0.40 -1.36 16 20 C -0.09 -0.66 10.04 -39.56 -0.40 -1.06 16 21 C -0.15 -1.39 10.02 -39.55 -0.40 -1.79 16 22 C 0.11 1.29 7.31 -39.25 -0.29 1.01 16 23 F -0.13 -1.82 17.08 2.25 0.04 -1.78 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 26 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 27 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 28 H 0.09 1.15 8.11 -51.93 -0.42 0.72 16 29 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -35.46 338.28 -7.78 -43.24 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -5.75 Total: -4.60 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.64 Total: -14.30 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.41 Total: -34.58 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.46 -7.78 -43.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588903602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.954 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds