Wall clock time and date at job start Tue Mar 31 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 120.00098 * 2 1 4 4 O 1.21289 * 120.00219 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00021 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47101 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47168 * 180.02562 * 6 5 3 8 8 C 1.52991 * 109.47114 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47047 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00157 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00084 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00084 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00292 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46896 * 59.99848 * 13 11 9 15 15 H 1.48495 * 109.47211 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46991 * 300.00233 * 13 11 9 17 17 C 1.40047 * 119.99682 * 179.97438 * 2 1 3 18 18 C 1.38808 * 120.07824 * 90.00544 * 17 2 1 19 19 C 1.38138 * 119.95415 * 179.97438 * 18 17 2 20 20 C 1.38278 * 120.11403 * 359.97438 * 19 18 17 21 21 C 1.38265 * 120.15797 * 359.97438 * 20 19 18 22 22 C 1.38309 * 120.04245 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.05832 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47396 * 270.00429 * 1 2 3 25 25 H 1.09005 * 109.46927 * 30.00539 * 1 2 3 26 26 H 1.09000 * 109.46801 * 149.99951 * 1 2 3 27 27 H 1.08994 * 109.47189 * 300.00163 * 5 3 2 28 28 H 1.09000 * 109.46855 * 60.00445 * 5 3 2 29 29 H 1.09006 * 109.46841 * 299.99856 * 6 5 3 30 30 H 1.08998 * 109.46854 * 59.99886 * 6 5 3 31 31 H 1.09011 * 109.46662 * 299.99935 * 7 6 5 32 32 H 1.08994 * 109.47494 * 59.99224 * 7 6 5 33 33 H 1.09004 * 109.47315 * 299.99122 * 8 7 6 34 34 H 1.08996 * 109.47995 * 59.99632 * 8 7 6 35 35 H 0.97002 * 120.00045 * 179.97438 * 12 11 9 36 36 H 1.08003 * 120.01766 * 359.97438 * 18 17 2 37 37 H 1.07997 * 119.94486 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.92242 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.98229 * 179.75007 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 1.6147 4.9602 -0.0011 8 6 2.6090 6.1231 -0.0022 9 6 1.8555 7.4282 -0.0028 10 1 0.7755 7.4283 -0.0028 11 6 2.5449 8.6222 -0.0033 12 7 3.8600 8.6223 -0.0038 13 14 1.6109 10.2401 -0.0033 14 1 0.7576 10.3190 1.2095 15 1 2.5759 11.3687 -0.0046 16 1 0.7567 10.3185 -1.2155 17 6 2.1652 -1.2129 0.0005 18 6 2.5131 -1.8159 -1.2004 19 6 3.2042 -3.0119 -1.1968 20 6 3.5506 -3.6095 0.0011 21 6 3.2073 -3.0125 1.2000 22 6 2.5154 -1.8149 1.2041 23 9 2.1794 -1.2315 2.3754 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.7591 2.5298 -0.8908 28 1 0.7585 2.5302 0.8892 29 1 3.0064 3.5778 0.8890 30 1 3.0063 3.5770 -0.8910 31 1 0.9878 5.0178 -0.8910 32 1 0.9883 5.0181 0.8890 33 1 3.2362 6.0658 0.8874 34 1 3.2351 6.0651 -0.8925 35 1 4.3450 9.4623 -0.0046 36 1 2.2436 -1.3501 -2.1368 37 1 3.4744 -3.4811 -2.1312 38 1 4.0912 -4.5444 0.0002 39 1 3.4758 -3.4837 2.1339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588903602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:10 Heat of formation + Delta-G solvation = -90.022285 kcal Electronic energy + Delta-G solvation = -20839.366803 eV Core-core repulsion = 17467.073019 eV Total energy + Delta-G solvation = -3372.293784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.00468 -41.49653 -39.56965 -36.81884 -36.54794 -34.64761 -32.12472 -31.60614 -30.69344 -27.86353 -27.36006 -24.86808 -23.83455 -23.18253 -21.77208 -20.54164 -18.83156 -18.43200 -18.05800 -17.75864 -17.70265 -16.81783 -16.59468 -16.49890 -15.92218 -15.65108 -15.14543 -14.74863 -14.53596 -14.44105 -14.05983 -13.71885 -13.62112 -13.51732 -13.37096 -13.09047 -12.90534 -12.78822 -12.38795 -12.34702 -12.17767 -12.15857 -11.39777 -11.36398 -11.20091 -10.91394 -10.54638 -10.06977 -10.02688 -9.73914 -8.18633 -6.31140 0.01884 0.15032 1.40236 1.44534 1.44879 1.52359 1.80873 2.42024 2.52162 3.13964 3.17705 3.58898 3.76064 3.96522 4.01758 4.06501 4.15591 4.28639 4.29877 4.50446 4.57523 4.59464 4.66735 4.74881 4.83747 4.88034 4.97422 5.08475 5.15116 5.22883 5.31068 5.33995 5.35469 5.48897 5.55482 5.76919 5.87295 5.91554 6.11942 6.24815 6.87180 7.04065 7.38540 8.93578 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.002752 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.927256 B =10173.574116 C =10265.381128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.580 5.580 3 C 0.512 3.488 4 O -0.577 6.577 5 C -0.122 4.122 6 C -0.096 4.096 7 C -0.094 4.094 8 C 0.019 3.981 9 C -0.543 4.543 10 H 0.067 0.933 11 C -0.007 4.007 12 N -0.939 5.939 13 Si 0.970 3.030 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.263 1.263 17 C 0.080 3.920 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.081 4.081 21 C -0.154 4.154 22 C 0.070 3.930 23 F -0.152 7.152 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.061 0.939 33 H -0.018 1.018 34 H -0.015 1.015 35 H 0.263 0.737 36 H 0.141 0.859 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -28.664 -2.078 30.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.311 5.311 3 C 0.303 3.697 4 O -0.455 6.455 5 C -0.161 4.161 6 C -0.134 4.134 7 C -0.131 4.131 8 C -0.018 4.018 9 C -0.580 4.580 10 H 0.086 0.914 11 C -0.204 4.204 12 N -0.579 5.579 13 Si 0.794 3.206 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.188 1.188 17 C -0.011 4.011 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.099 4.099 21 C -0.173 4.173 22 C 0.049 3.951 23 F -0.130 7.130 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.001 0.999 34 H 0.004 0.996 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.189 0.811 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.037 -28.506 -2.028 29.686 hybrid contribution 0.142 1.282 0.513 1.388 sum -7.894 -27.224 -1.515 28.386 Atomic orbital electron populations 1.22229 0.75400 1.05738 1.03507 1.45522 1.08664 1.02747 1.74160 1.21555 0.87736 0.86314 0.74088 1.90697 1.16447 1.87889 1.50464 1.21719 0.98973 0.88625 1.06821 1.21269 0.97469 0.93722 1.00986 1.21434 0.97798 0.92403 1.01497 1.19048 0.94683 0.93828 0.94261 1.21729 0.93788 0.92163 1.50361 0.91447 1.26110 0.95780 1.03797 0.94749 1.70131 1.08125 1.27838 1.51831 0.85425 0.78161 0.77613 0.79387 1.18924 1.21097 1.18774 1.17913 1.01400 0.88938 0.92807 1.21498 0.97308 0.96057 0.96501 1.21562 0.97211 0.94412 1.00308 1.21539 0.97245 1.00711 0.90395 1.21445 0.99878 0.93932 1.02003 1.18492 1.01324 0.94822 0.80455 1.91449 1.90758 1.84413 1.46407 0.91602 0.87852 0.88960 0.85461 0.86479 0.94284 0.93608 0.91646 0.92078 0.99935 0.99649 0.92843 0.84077 0.81642 0.81051 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.24 127.77 1.31 2.31 16 2 N -0.58 -13.86 2.74 -654.32 -1.79 -15.65 16 3 C 0.51 15.84 7.64 87.66 0.67 16.51 16 4 O -0.58 -23.74 15.96 -3.06 -0.05 -23.79 16 5 C -0.12 -3.25 4.25 29.85 0.13 -3.12 16 6 C -0.10 -3.63 4.50 30.59 0.14 -3.49 16 7 C -0.09 -3.90 5.15 30.59 0.16 -3.74 16 8 C 0.02 1.06 4.97 29.85 0.15 1.21 16 9 C -0.54 -31.78 9.11 25.60 0.23 -31.54 16 10 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 11 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 12 N -0.94 -59.80 13.29 21.45 0.28 -59.52 16 13 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 C 0.08 1.93 4.47 38.16 0.17 2.10 16 18 C -0.09 -1.76 9.97 22.38 0.22 -1.53 16 19 C -0.12 -1.50 10.04 22.26 0.22 -1.28 16 20 C -0.08 -0.98 10.04 22.29 0.22 -0.76 16 21 C -0.15 -2.66 10.02 22.29 0.22 -2.44 16 22 C 0.07 1.71 7.31 22.48 0.16 1.87 16 23 F -0.15 -4.34 17.08 44.97 0.77 -3.57 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.10 1.04 6.44 -2.38 -0.02 1.03 16 26 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 27 H 0.13 2.54 7.40 -2.39 -0.02 2.52 16 28 H 0.12 2.60 8.11 -2.39 -0.02 2.58 16 29 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 30 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 31 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 34 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -81.41 338.28 6.73 -74.68 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.03 Total: 4.59 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.47 Total: -23.88 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.51 Total: -75.17 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.77 Total: -3.57 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -81.41 6.73 -74.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588903602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.345 kcal (2) G-P(sol) polarization free energy of solvation -81.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds