Wall clock time and date at job start Tue Mar 31 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36227 * 120.43716 * 2 1 4 4 C 1.35103 * 120.85649 * 179.76062 * 3 2 1 5 5 N 1.33158 * 121.72162 * 0.52464 * 4 3 2 6 6 C 1.31554 * 120.75355 * 359.73436 * 5 4 3 7 7 N 1.39257 * 120.44273 * 180.02562 * 6 5 4 8 8 C 1.34780 * 120.00183 * 359.97438 * 7 6 5 9 9 O 1.21283 * 119.99562 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00194 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47064 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46856 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46856 * 179.97438 * 12 11 10 14 14 C 1.50710 * 109.46900 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99896 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99576 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00578 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47162 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.46967 * 210.00212 * 18 16 14 21 21 H 1.48506 * 109.46959 * 330.00049 * 18 16 14 22 22 C 1.35178 * 120.43843 * 180.26912 * 2 1 3 23 23 O 1.21938 * 120.78112 * 359.95948 * 22 2 1 24 24 H 1.09002 * 109.47391 * 269.72561 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.72617 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.72745 * 1 2 3 27 27 H 1.07998 * 119.56673 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.13480 * 180.25929 * 4 3 2 29 29 H 0.97001 * 119.99720 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46934 * 300.00271 * 10 8 7 31 31 H 1.08996 * 109.47151 * 59.99921 * 10 8 7 32 32 H 1.09000 * 109.47036 * 299.99452 * 11 10 8 33 33 H 1.08996 * 109.47350 * 59.99860 * 11 10 8 34 34 H 1.09007 * 109.47263 * 299.99618 * 12 11 10 35 35 H 1.08996 * 109.47449 * 59.99683 * 12 11 10 36 36 H 1.09000 * 109.47036 * 299.99215 * 13 12 11 37 37 H 1.08997 * 109.47708 * 60.00023 * 13 12 11 38 38 H 0.96999 * 120.00341 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1551 1.1745 0.0000 4 6 3.5061 1.1844 0.0048 5 7 4.2145 0.0570 -0.0006 6 6 3.6152 -1.1141 -0.0057 7 7 4.3624 -2.2892 -0.0108 8 6 5.7090 -2.2315 -0.0111 9 8 6.2699 -1.1562 -0.0064 10 6 6.5177 -3.5032 -0.0161 11 6 8.0085 -3.1594 -0.0147 12 6 8.8295 -4.4505 -0.0204 13 6 10.3204 -4.1068 -0.0196 14 6 11.1291 -5.3786 -0.0246 15 1 10.6296 -6.3361 -0.0284 16 6 12.5066 -5.3195 -0.0254 17 7 13.1148 -4.1535 -0.0213 18 14 13.5090 -6.8958 -0.0323 19 1 13.7736 -7.3080 -1.4341 20 1 14.7982 -6.6656 0.6677 21 1 12.7519 -7.9669 0.6642 22 6 2.1498 -1.1655 -0.0055 23 8 1.5627 -2.2342 -0.0098 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.6152 2.1099 0.0004 28 1 4.0250 2.1316 0.0090 29 1 3.9138 -3.1492 -0.0142 30 1 6.2793 -4.0888 0.8719 31 1 6.2787 -4.0822 -0.9081 32 1 8.2472 -2.5737 -0.9024 33 1 8.2472 -2.5806 0.8775 34 1 8.5910 -5.0367 0.8672 35 1 8.5908 -5.0290 -0.9128 36 1 10.5586 -3.5209 -0.9074 37 1 10.5595 -3.5282 0.8726 38 1 14.0839 -4.1119 -0.0215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588934462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:39 Heat of formation + Delta-G solvation = -32.179703 kcal Electronic energy + Delta-G solvation = -20538.892006 eV Core-core repulsion = 17189.026426 eV Total energy + Delta-G solvation = -3349.865580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91367 -39.80989 -37.87930 -36.43096 -34.84669 -34.16881 -32.58851 -30.35759 -29.43044 -28.62051 -26.02763 -24.39545 -23.77525 -22.25512 -20.56342 -19.96505 -19.02773 -18.08627 -17.31188 -16.78747 -16.53385 -16.14692 -15.71700 -15.69969 -14.71509 -14.45054 -14.35465 -14.00504 -13.73601 -13.68245 -13.08820 -12.99712 -12.60162 -12.27056 -11.70397 -11.65584 -11.55123 -11.50752 -10.95608 -10.51629 -10.48052 -10.38850 -10.21301 -10.19539 -9.57476 -9.31726 -9.11031 -8.94319 -8.27370 -7.93196 -5.92156 -3.94540 0.34082 1.36949 1.77483 2.62395 2.73674 3.36534 3.40044 3.42464 3.45785 3.69538 4.13422 4.31566 4.45586 4.51956 4.66731 4.90216 4.94787 5.00973 5.26514 5.36435 5.36914 5.43237 5.80725 5.85978 6.06751 6.15962 6.30922 6.32765 6.57313 6.86682 6.95973 7.06219 7.22995 7.24081 7.70746 7.77607 7.93689 8.09439 8.17803 8.51139 9.13234 9.68975 11.19152 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.054126 B = 0.002458 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.189007 B =11390.953296 C =11871.789287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.484 5.484 3 C 0.030 3.970 4 C 0.002 3.998 5 N -0.416 5.416 6 C 0.302 3.698 7 N -0.641 5.641 8 C 0.501 3.499 9 O -0.464 6.464 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.485 3.515 23 O -0.530 6.530 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.424 0.576 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.572 10.825 -0.017 30.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.200 5.200 3 C -0.097 4.097 4 C -0.138 4.138 5 N -0.140 5.140 6 C 0.040 3.960 7 N -0.291 5.291 8 C 0.288 3.712 9 O -0.330 6.330 10 C -0.174 4.174 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.276 3.724 23 O -0.408 6.408 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.185 0.815 28 H 0.192 0.808 29 H 0.262 0.738 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.496 11.203 -0.009 29.690 hybrid contribution -0.598 -1.099 -0.005 1.252 sum -28.094 10.103 -0.014 29.855 Atomic orbital electron populations 1.22208 0.76048 1.05235 1.04177 1.45231 1.09241 1.06063 1.59489 1.22714 0.94505 0.89972 1.02480 1.21834 0.89128 0.97151 1.05667 1.67945 1.38441 0.96347 1.11248 1.21237 0.86437 0.88221 1.00063 1.43642 1.07132 1.06690 1.71610 1.21507 0.80541 0.93090 0.76061 1.90816 1.69278 1.30483 1.42467 1.21837 0.97228 0.93834 1.04551 1.21486 0.89913 0.99619 1.03187 1.21650 0.98295 0.94661 1.00182 1.19101 0.88598 0.96715 0.97355 1.21286 0.91233 0.92953 1.50314 0.92744 1.25044 0.98101 0.95965 0.95506 1.69973 1.08915 1.23604 1.50986 0.86612 0.79641 0.83807 0.78027 1.20729 1.21286 1.19927 1.19001 0.88290 0.84102 0.80965 1.90955 1.70606 1.27463 1.51728 0.90263 0.88719 0.89160 0.81493 0.80846 0.73789 0.88618 0.88618 0.91598 0.91589 0.93380 0.93386 0.96556 0.96546 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 10.46 59.85 0.63 0.89 16 2 N -0.48 -3.75 3.02 -124.89 -0.38 -4.12 16 3 C 0.03 0.18 10.32 -16.71 -0.17 0.01 16 4 C 0.00 0.02 11.03 -18.09 -0.20 -0.18 16 5 N -0.42 -5.68 8.03 -10.97 -0.09 -5.77 16 6 C 0.30 3.91 7.68 -152.44 -1.17 2.74 16 7 N -0.64 -7.92 5.40 -9.63 -0.05 -7.97 16 8 C 0.50 7.36 7.79 -10.99 -0.09 7.28 16 9 O -0.46 -8.64 14.29 5.55 0.08 -8.56 16 10 C -0.13 -1.79 5.70 -27.88 -0.16 -1.95 16 11 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.49 5.49 7.65 -12.70 -0.10 5.39 16 23 O -0.53 -6.92 16.33 4.98 0.08 -6.83 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.48 7.49 -51.93 -0.39 0.10 16 26 H 0.09 0.10 8.05 -51.93 -0.42 -0.32 16 27 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 28 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.42 4.11 8.29 -40.82 -0.34 3.77 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -37.78 330.22 -7.06 -44.84 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.33 Total: -2.95 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.07 Total: -3.69 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.22 Total: -44.84 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.16 Total: -15.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.78 -7.06 -44.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588934462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.662 kcal (2) G-P(sol) polarization free energy of solvation -37.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds