Wall clock time and date at job start Tue Mar 31 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36227 * 120.43716 * 2 1 4 4 C 1.35103 * 120.85649 * 179.76062 * 3 2 1 5 5 N 1.33158 * 121.72162 * 0.52464 * 4 3 2 6 6 C 1.31554 * 120.75355 * 359.73436 * 5 4 3 7 7 N 1.39257 * 120.44273 * 180.02562 * 6 5 4 8 8 C 1.34780 * 120.00183 * 359.97438 * 7 6 5 9 9 O 1.21283 * 119.99562 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00194 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47064 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46856 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46856 * 179.97438 * 12 11 10 14 14 C 1.50710 * 109.46900 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99896 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99576 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00578 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47162 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.46967 * 210.00212 * 18 16 14 21 21 H 1.48506 * 109.46959 * 330.00049 * 18 16 14 22 22 C 1.35178 * 120.43843 * 180.26912 * 2 1 3 23 23 O 1.21938 * 120.78112 * 359.95948 * 22 2 1 24 24 H 1.09002 * 109.47391 * 269.72561 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.72617 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.72745 * 1 2 3 27 27 H 1.07998 * 119.56673 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.13480 * 180.25929 * 4 3 2 29 29 H 0.97001 * 119.99720 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46934 * 300.00271 * 10 8 7 31 31 H 1.08996 * 109.47151 * 59.99921 * 10 8 7 32 32 H 1.09000 * 109.47036 * 299.99452 * 11 10 8 33 33 H 1.08996 * 109.47350 * 59.99860 * 11 10 8 34 34 H 1.09007 * 109.47263 * 299.99618 * 12 11 10 35 35 H 1.08996 * 109.47449 * 59.99683 * 12 11 10 36 36 H 1.09000 * 109.47036 * 299.99215 * 13 12 11 37 37 H 1.08997 * 109.47708 * 60.00023 * 13 12 11 38 38 H 0.96999 * 120.00341 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1551 1.1745 0.0000 4 6 3.5061 1.1844 0.0048 5 7 4.2145 0.0570 -0.0006 6 6 3.6152 -1.1141 -0.0057 7 7 4.3624 -2.2892 -0.0108 8 6 5.7090 -2.2315 -0.0111 9 8 6.2699 -1.1562 -0.0064 10 6 6.5177 -3.5032 -0.0161 11 6 8.0085 -3.1594 -0.0147 12 6 8.8295 -4.4505 -0.0204 13 6 10.3204 -4.1068 -0.0196 14 6 11.1291 -5.3786 -0.0246 15 1 10.6296 -6.3361 -0.0284 16 6 12.5066 -5.3195 -0.0254 17 7 13.1148 -4.1535 -0.0213 18 14 13.5090 -6.8958 -0.0323 19 1 13.7736 -7.3080 -1.4341 20 1 14.7982 -6.6656 0.6677 21 1 12.7519 -7.9669 0.6642 22 6 2.1498 -1.1655 -0.0055 23 8 1.5627 -2.2342 -0.0098 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.6152 2.1099 0.0004 28 1 4.0250 2.1316 0.0090 29 1 3.9138 -3.1492 -0.0142 30 1 6.2793 -4.0888 0.8719 31 1 6.2787 -4.0822 -0.9081 32 1 8.2472 -2.5737 -0.9024 33 1 8.2472 -2.5806 0.8775 34 1 8.5910 -5.0367 0.8672 35 1 8.5908 -5.0290 -0.9128 36 1 10.5586 -3.5209 -0.9074 37 1 10.5595 -3.5282 0.8726 38 1 14.0839 -4.1119 -0.0215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588934462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:39 Heat of formation + Delta-G solvation = -58.911704 kcal Electronic energy + Delta-G solvation = -20540.051193 eV Core-core repulsion = 17189.026426 eV Total energy + Delta-G solvation = -3351.024767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.67292 -40.85791 -38.68586 -37.33599 -36.51895 -35.08863 -34.57871 -31.70775 -30.54471 -29.19921 -27.65856 -25.56762 -24.50283 -23.82498 -21.84459 -21.46215 -19.86932 -18.92657 -18.38844 -18.01783 -17.53406 -17.51470 -16.85687 -16.55096 -16.47777 -15.64103 -15.30899 -15.16333 -14.52844 -14.50579 -14.36116 -14.03244 -13.61409 -13.59625 -13.40984 -13.28126 -12.81802 -12.45026 -12.33533 -12.28771 -12.13968 -12.10599 -11.38051 -11.35711 -11.23935 -11.06097 -11.01434 -10.53419 -10.05624 -8.68037 -8.17205 -6.29170 -0.39435 0.58225 1.09322 1.41113 1.43504 1.54552 1.58817 1.93817 2.43055 2.61566 2.99376 3.15374 3.33897 3.82450 3.90677 4.06851 4.16079 4.18624 4.33177 4.41866 4.63679 4.69131 4.74043 4.75413 4.83634 4.89558 5.15915 5.20564 5.32898 5.35311 5.40192 5.57849 5.59848 5.80618 5.90240 6.11710 6.27240 6.48281 6.86402 6.89423 7.21607 7.40224 8.95040 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.054126 B = 0.002458 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.189007 B =11390.953296 C =11871.789287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.477 5.477 3 C 0.081 3.919 4 C -0.039 4.039 5 N -0.446 5.446 6 C 0.254 3.746 7 N -0.634 5.634 8 C 0.504 3.496 9 O -0.517 6.517 10 C -0.123 4.123 11 C -0.095 4.095 12 C -0.096 4.096 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.260 1.260 22 C 0.479 3.521 23 O -0.558 6.558 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.229 0.771 28 H 0.193 0.807 29 H 0.434 0.566 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.062 0.938 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.327 10.664 -0.028 33.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.190 5.190 3 C -0.047 4.047 4 C -0.179 4.179 5 N -0.169 5.169 6 C -0.005 4.005 7 N -0.284 5.284 8 C 0.292 3.708 9 O -0.388 6.388 10 C -0.163 4.163 11 C -0.133 4.133 12 C -0.133 4.133 13 C -0.019 4.019 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.184 1.184 22 C 0.272 3.728 23 O -0.439 6.439 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.151 0.849 27 H 0.245 0.755 28 H 0.210 0.790 29 H 0.274 0.726 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.326 11.024 -0.020 32.268 hybrid contribution 0.106 -0.799 0.001 0.806 sum -30.220 10.225 -0.020 31.903 Atomic orbital electron populations 1.22586 0.73304 1.06803 1.05615 1.45558 1.10961 1.05584 1.56943 1.23514 0.93808 0.91159 0.96246 1.22297 0.90831 0.96603 1.08177 1.67799 1.41004 0.97820 1.10236 1.21318 0.87392 0.88061 1.03765 1.43337 1.06329 1.07472 1.71268 1.21601 0.81333 0.92655 0.75218 1.90788 1.70412 1.32132 1.45467 1.21707 0.93488 0.93807 1.07257 1.21255 0.93065 0.97661 1.01355 1.21447 0.94303 0.96133 1.01445 1.19062 0.92973 0.95478 0.94386 1.21760 0.92047 0.93935 1.50120 0.91585 1.26098 0.99638 0.99903 0.94860 1.70132 1.09382 1.26376 1.51945 0.85381 0.77649 0.79099 0.78500 1.19723 1.20946 1.18361 1.18816 0.87718 0.84909 0.81368 1.90926 1.70835 1.28508 1.53615 0.88827 0.89952 0.84909 0.75483 0.79005 0.72607 0.85835 0.85825 0.93562 0.93556 0.91978 0.91964 0.99641 0.99633 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.46 127.77 1.34 1.58 16 2 N -0.48 -5.99 3.02 -666.92 -2.01 -8.00 16 3 C 0.08 0.66 10.32 83.29 0.86 1.52 16 4 C -0.04 -0.64 11.03 83.77 0.92 0.28 16 5 N -0.45 -12.40 8.03 -188.63 -1.51 -13.91 16 6 C 0.25 6.70 7.68 135.20 1.04 7.74 16 7 N -0.63 -16.07 5.40 -302.76 -1.63 -17.70 16 8 C 0.50 15.28 7.79 87.66 0.68 15.96 16 9 O -0.52 -20.40 14.29 -3.04 -0.04 -20.45 16 10 C -0.12 -3.21 5.70 29.85 0.17 -3.04 16 11 C -0.10 -3.50 4.50 30.59 0.14 -3.37 16 12 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 13 C 0.02 1.01 4.97 29.85 0.15 1.16 16 14 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 15 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 16 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 17 N -0.94 -59.68 13.29 21.45 0.28 -59.40 16 18 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 C 0.48 10.53 7.65 86.37 0.66 11.19 16 23 O -0.56 -14.46 16.33 -5.11 -0.08 -14.54 16 24 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.08 0.65 7.49 -2.39 -0.02 0.63 16 26 H 0.13 -0.50 8.05 -2.38 -0.02 -0.52 16 27 H 0.23 -0.87 8.06 -2.91 -0.02 -0.90 16 28 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.43 8.52 8.29 -92.71 -0.77 7.75 16 30 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 34 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -88.15 330.22 4.14 -84.01 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.30 Total: 4.87 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 6.81 Total: -2.31 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.88 Total: -99.02 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.13 Total: -34.99 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -88.15 4.14 -84.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588934462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.102 kcal (2) G-P(sol) polarization free energy of solvation -88.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds