Wall clock time and date at job start Tue Mar 31 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46765 * 124.34976 * 2 1 4 4 C 1.54485 * 105.47108 * 162.98357 * 3 2 1 5 5 C 1.54623 * 101.76693 * 25.41660 * 4 3 2 6 6 H 1.09002 * 110.48677 * 94.01258 * 5 4 3 7 7 C 1.50695 * 110.48670 * 216.52363 * 5 4 3 8 8 O 1.21283 * 120.00085 * 15.74651 * 7 5 4 9 9 N 1.34779 * 120.00057 * 195.74955 * 7 5 4 10 10 C 1.46498 * 119.99965 * 183.61294 * 9 7 5 11 11 C 1.50695 * 109.47375 * 270.00045 * 10 9 7 12 12 H 1.08005 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00571 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99466 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00509 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46970 * 89.99791 * 15 13 11 17 17 H 1.48497 * 109.47335 * 210.00346 * 15 13 11 18 18 H 1.48499 * 109.47169 * 330.00301 * 15 13 11 19 19 C 1.46496 * 120.00004 * 3.61160 * 9 7 5 20 20 C 1.53007 * 109.46924 * 84.55623 * 19 9 7 21 21 C 1.47193 * 109.47221 * 180.02562 * 20 19 9 22 22 N 6.71905 * 124.75339 * 226.33698 * 2 1 3 23 23 C 1.34419 * 124.34953 * 180.02562 * 2 1 3 24 24 O 1.21286 * 124.94347 * 0.43643 * 23 2 1 25 25 H 1.09003 * 109.47177 * 90.00374 * 1 2 3 26 26 H 1.09000 * 109.47077 * 209.99883 * 1 2 3 27 27 H 1.08996 * 109.47314 * 329.99877 * 1 2 3 28 28 H 1.09001 * 110.24352 * 43.98854 * 3 2 1 29 29 H 1.09000 * 110.31967 * 282.02431 * 3 2 1 30 30 H 1.08997 * 110.96908 * 267.29485 * 4 3 2 31 31 H 1.09000 * 110.99573 * 143.54882 * 4 3 2 32 32 H 1.09005 * 109.47573 * 30.00053 * 10 9 7 33 33 H 1.09000 * 109.47025 * 149.99991 * 10 9 7 34 34 H 0.96998 * 120.00021 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47319 * 204.55056 * 19 9 7 36 36 H 1.08996 * 109.47390 * 324.55540 * 19 9 7 37 37 H 1.09007 * 109.46738 * 299.99836 * 20 19 9 38 38 H 1.08996 * 109.47154 * 59.99773 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6898 -0.7378 0.0101 6 1 4.1216 -0.8533 -0.9840 7 6 4.4403 -1.5786 1.0106 8 8 4.6973 -1.1304 2.1079 9 7 4.8260 -2.8285 0.6860 10 6 5.4852 -3.6742 1.6842 11 6 6.9761 -3.4665 1.6128 12 1 7.3911 -2.7735 0.8958 13 6 7.8105 -4.1602 2.4634 14 7 7.3051 -5.0037 3.3368 15 14 9.6585 -3.9033 2.3744 16 1 10.0497 -2.8017 3.2903 17 1 10.3520 -5.1527 2.7782 18 1 10.0429 -3.5510 0.9840 19 6 4.5859 -3.3416 -0.6651 20 6 5.7225 -2.8982 -1.5884 21 6 5.4810 -3.4131 -2.9460 22 7 5.2952 -3.8114 -3.9936 23 6 2.2234 -1.1098 -0.0005 24 8 1.7946 -2.2443 -0.0086 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.8984 1.9383 0.7103 29 1 2.3309 1.6444 -0.9997 30 1 3.8269 0.8447 1.5141 31 1 4.4758 1.3008 -0.0962 32 1 5.1285 -3.4075 2.6791 33 1 5.2541 -4.7204 1.4837 34 1 7.8920 -5.4921 3.9350 35 1 4.5435 -4.4304 -0.6381 36 1 3.6400 -2.9503 -1.0395 37 1 5.7649 -1.8093 -1.6154 38 1 6.6684 -3.2895 -1.2139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589833457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:39 Heat of formation + Delta-G solvation = -35.343475 kcal Electronic energy + Delta-G solvation = -22265.063543 eV Core-core repulsion = 18915.060771 eV Total energy + Delta-G solvation = -3350.002772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88786 -38.64443 -36.81847 -36.40613 -35.16760 -33.11143 -32.51990 -30.74862 -28.55027 -27.07220 -26.67582 -23.92420 -23.33141 -21.74441 -20.02863 -18.45992 -17.54631 -17.20979 -16.67583 -16.27502 -16.13192 -15.65288 -14.97090 -14.57077 -14.40581 -14.08451 -13.80400 -13.71550 -13.23168 -12.99881 -12.74536 -12.61605 -12.39608 -12.33274 -12.23915 -12.12148 -11.78278 -11.61511 -11.24871 -11.08655 -10.93694 -10.77723 -10.55474 -10.17152 -9.78785 -9.65007 -9.13952 -8.84516 -8.45752 -7.81310 -6.06952 -4.12335 2.44118 2.78252 2.88254 2.94870 3.27180 3.29869 3.36685 3.37741 3.73059 4.21583 4.32848 4.37714 4.45747 4.82567 4.89506 5.06678 5.08803 5.14612 5.24124 5.27929 5.32819 5.36933 5.41118 5.54422 5.67711 5.76822 6.02237 6.09797 6.26267 6.36117 6.92567 6.98233 7.39773 7.44979 7.70918 7.87817 8.08609 8.17662 8.26815 8.79900 8.95509 9.52781 11.01251 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.005732 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.464084 B = 4883.280475 C = 5747.176366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.625 5.625 3 C 0.103 3.897 4 C -0.120 4.120 5 C -0.156 4.156 6 H 0.125 0.875 7 C 0.528 3.472 8 O -0.526 6.526 9 N -0.583 5.583 10 C 0.245 3.755 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.055 4.055 21 C 0.220 3.780 22 N -0.451 5.451 23 C 0.531 3.469 24 O -0.513 6.513 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 12.717 -7.986 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.360 5.360 3 C -0.020 4.020 4 C -0.158 4.158 5 C -0.180 4.180 6 H 0.143 0.857 7 C 0.312 3.688 8 O -0.402 6.402 9 N -0.313 5.313 10 C 0.127 3.873 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.008 4.008 20 C -0.096 4.096 21 C -0.098 4.098 22 N -0.128 5.128 23 C 0.317 3.683 24 O -0.388 6.388 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.018 11.581 -8.792 17.658 hybrid contribution 1.169 0.288 0.289 1.239 sum -8.849 11.870 -8.502 17.073 Atomic orbital electron populations 1.21535 0.77885 1.03247 1.01741 1.48096 1.06505 1.07349 1.74041 1.22163 0.90831 0.87234 1.01751 1.22649 0.95912 0.92183 1.05090 1.22292 0.95001 0.98079 1.02660 0.85725 1.19428 0.79753 0.82145 0.87465 1.90684 1.56103 1.70654 1.22804 1.48062 1.57448 1.13781 1.11972 1.19404 0.91893 0.88890 0.87160 1.21402 0.91085 1.24607 1.19543 0.92112 1.24931 0.98970 0.95033 0.95048 1.69931 1.35418 1.26629 1.21105 0.86532 0.85095 0.77583 0.78390 1.20594 1.21257 1.19847 1.21380 0.95662 1.01329 0.82408 1.20035 1.04325 1.01942 0.83311 1.29208 0.92780 0.93115 0.94722 1.81176 1.09334 1.09601 1.12736 1.20328 0.87969 0.84567 0.75405 1.90754 1.78043 1.20673 1.49318 0.92641 0.90606 0.91022 0.90094 0.90982 0.87653 0.88701 0.93754 0.94578 0.92666 0.89178 0.90086 0.87988 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 10.96 59.85 0.66 1.51 16 2 N -0.62 -7.02 3.33 -180.28 -0.60 -7.62 16 3 C 0.10 0.84 7.35 -3.12 -0.02 0.82 16 4 C -0.12 -1.26 6.59 -25.10 -0.17 -1.43 16 5 C -0.16 -2.12 2.37 -91.79 -0.22 -2.34 16 6 H 0.13 1.36 5.91 -51.93 -0.31 1.06 16 7 C 0.53 10.06 6.78 -10.99 -0.07 9.98 16 8 O -0.53 -12.08 15.14 5.55 0.08 -12.00 16 9 N -0.58 -11.46 2.47 -175.06 -0.43 -11.89 16 10 C 0.25 6.03 5.17 -5.20 -0.03 6.00 16 11 C -0.53 -13.70 9.20 -34.44 -0.32 -14.01 16 12 H 0.06 1.51 7.42 -52.48 -0.39 1.12 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 15 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.12 1.85 4.98 -4.04 -0.02 1.83 16 20 C -0.05 -0.72 5.82 -29.52 -0.17 -0.89 16 21 C 0.22 3.09 15.43 -20.76 -0.32 2.77 16 22 N -0.45 -7.35 18.54 42.15 0.78 -6.57 16 23 C 0.53 7.85 7.12 -10.86 -0.08 7.78 16 24 O -0.51 -9.31 15.79 5.55 0.09 -9.22 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.11 1.35 6.88 -51.93 -0.36 1.00 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 1.25 7.48 -51.93 -0.39 0.86 16 33 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.09 1.43 7.83 -51.93 -0.41 1.02 16 36 H 0.08 1.21 4.99 -51.93 -0.26 0.95 16 37 H 0.10 1.09 6.87 -51.92 -0.36 0.73 16 38 H 0.13 1.86 7.56 -51.93 -0.39 1.47 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -34.35 326.38 -5.23 -39.57 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.93 Total: -1.71 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -0.85 Total: 13.62 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.48 Total: -50.94 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.17 Total: -21.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.35 -5.23 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589833457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.229 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds