Wall clock time and date at job start Tue Mar 31 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46765 * 124.34976 * 2 1 4 4 C 1.54485 * 105.47108 * 162.98357 * 3 2 1 5 5 C 1.54623 * 101.76693 * 25.41660 * 4 3 2 6 6 H 1.09002 * 110.48677 * 94.01258 * 5 4 3 7 7 C 1.50695 * 110.48670 * 216.52363 * 5 4 3 8 8 O 1.21283 * 120.00085 * 15.74651 * 7 5 4 9 9 N 1.34779 * 120.00057 * 195.74955 * 7 5 4 10 10 C 1.46498 * 119.99965 * 183.61294 * 9 7 5 11 11 C 1.50695 * 109.47375 * 270.00045 * 10 9 7 12 12 H 1.08005 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00571 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99466 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00509 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46970 * 89.99791 * 15 13 11 17 17 H 1.48497 * 109.47335 * 210.00346 * 15 13 11 18 18 H 1.48499 * 109.47169 * 330.00301 * 15 13 11 19 19 C 1.46496 * 120.00004 * 3.61160 * 9 7 5 20 20 C 1.53007 * 109.46924 * 84.55623 * 19 9 7 21 21 C 1.47193 * 109.47221 * 180.02562 * 20 19 9 22 22 N 6.71905 * 124.75339 * 226.33698 * 2 1 3 23 23 C 1.34419 * 124.34953 * 180.02562 * 2 1 3 24 24 O 1.21286 * 124.94347 * 0.43643 * 23 2 1 25 25 H 1.09003 * 109.47177 * 90.00374 * 1 2 3 26 26 H 1.09000 * 109.47077 * 209.99883 * 1 2 3 27 27 H 1.08996 * 109.47314 * 329.99877 * 1 2 3 28 28 H 1.09001 * 110.24352 * 43.98854 * 3 2 1 29 29 H 1.09000 * 110.31967 * 282.02431 * 3 2 1 30 30 H 1.08997 * 110.96908 * 267.29485 * 4 3 2 31 31 H 1.09000 * 110.99573 * 143.54882 * 4 3 2 32 32 H 1.09005 * 109.47573 * 30.00053 * 10 9 7 33 33 H 1.09000 * 109.47025 * 149.99991 * 10 9 7 34 34 H 0.96998 * 120.00021 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47319 * 204.55056 * 19 9 7 36 36 H 1.08996 * 109.47390 * 324.55540 * 19 9 7 37 37 H 1.09007 * 109.46738 * 299.99836 * 20 19 9 38 38 H 1.08996 * 109.47154 * 59.99773 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6898 -0.7378 0.0101 6 1 4.1216 -0.8533 -0.9840 7 6 4.4403 -1.5786 1.0106 8 8 4.6973 -1.1304 2.1079 9 7 4.8260 -2.8285 0.6860 10 6 5.4852 -3.6742 1.6842 11 6 6.9761 -3.4665 1.6128 12 1 7.3911 -2.7735 0.8958 13 6 7.8105 -4.1602 2.4634 14 7 7.3051 -5.0037 3.3368 15 14 9.6585 -3.9033 2.3744 16 1 10.0497 -2.8017 3.2903 17 1 10.3520 -5.1527 2.7782 18 1 10.0429 -3.5510 0.9840 19 6 4.5859 -3.3416 -0.6651 20 6 5.7225 -2.8982 -1.5884 21 6 5.4810 -3.4131 -2.9460 22 7 5.2952 -3.8114 -3.9936 23 6 2.2234 -1.1098 -0.0005 24 8 1.7946 -2.2443 -0.0086 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.8984 1.9383 0.7103 29 1 2.3309 1.6444 -0.9997 30 1 3.8269 0.8447 1.5141 31 1 4.4758 1.3008 -0.0962 32 1 5.1285 -3.4075 2.6791 33 1 5.2541 -4.7204 1.4837 34 1 7.8920 -5.4921 3.9350 35 1 4.5435 -4.4304 -0.6381 36 1 3.6400 -2.9503 -1.0395 37 1 5.7649 -1.8093 -1.6154 38 1 6.6684 -3.2895 -1.2139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589833457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:39 Heat of formation + Delta-G solvation = -59.153162 kcal Electronic energy + Delta-G solvation = -22266.096008 eV Core-core repulsion = 18915.060771 eV Total energy + Delta-G solvation = -3351.035237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02739 -40.03799 -38.09015 -37.49469 -36.67294 -34.86112 -33.71049 -32.17014 -29.89807 -28.42113 -27.65229 -25.23600 -25.05139 -22.86809 -21.14359 -19.77618 -18.97748 -18.43052 -18.06550 -17.72851 -17.30237 -17.00814 -16.31545 -15.99351 -15.72749 -15.44907 -14.90626 -14.75470 -14.58576 -14.22244 -14.02461 -13.80658 -13.67947 -13.55544 -13.41671 -13.27221 -13.06789 -12.87481 -12.77546 -12.59922 -12.47048 -12.16123 -11.91709 -11.82085 -11.57412 -10.94141 -10.69882 -10.55608 -9.70175 -9.50228 -8.13286 -6.26526 1.27914 1.46197 1.48133 1.56474 1.59789 1.79480 1.80994 2.11981 2.32527 2.48851 3.05780 3.18696 3.35521 3.41664 3.80758 3.97234 4.05004 4.12061 4.18045 4.39743 4.45141 4.54359 4.68305 4.76615 4.80152 4.89055 5.04676 5.06393 5.10590 5.27419 5.30632 5.55746 5.62919 5.86279 6.00745 6.12555 6.56427 6.67647 6.83667 7.04994 7.30151 7.46919 8.94879 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.005732 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.464084 B = 4883.280475 C = 5747.176366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.620 5.620 3 C 0.105 3.895 4 C -0.118 4.118 5 C -0.148 4.148 6 H 0.158 0.842 7 C 0.521 3.479 8 O -0.575 6.575 9 N -0.588 5.588 10 C 0.260 3.740 11 C -0.528 4.528 12 H 0.075 0.925 13 C 0.005 3.995 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.252 1.252 19 C 0.118 3.882 20 C -0.041 4.041 21 C 0.245 3.755 22 N -0.485 5.485 23 C 0.517 3.483 24 O -0.561 6.561 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.129 0.871 32 H -0.004 1.004 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 15.523 -10.241 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.353 5.353 3 C -0.017 4.017 4 C -0.155 4.155 5 C -0.172 4.172 6 H 0.175 0.825 7 C 0.308 3.692 8 O -0.455 6.455 9 N -0.317 5.317 10 C 0.139 3.861 11 C -0.567 4.567 12 H 0.093 0.907 13 C -0.193 4.193 14 N -0.575 5.575 15 Si 0.789 3.211 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.176 1.176 19 C -0.007 4.007 20 C -0.082 4.082 21 C -0.072 4.072 22 N -0.163 5.163 23 C 0.304 3.696 24 O -0.440 6.440 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.668 14.445 -11.102 20.625 hybrid contribution 0.935 -0.554 1.044 1.507 sum -8.733 13.891 -10.058 19.246 Atomic orbital electron populations 1.21742 0.76448 1.03733 1.03010 1.48307 1.07641 1.07390 1.71956 1.22455 0.88591 0.86141 1.04496 1.22738 0.98818 0.90143 1.03851 1.22314 0.93758 0.98776 1.02355 0.82496 1.20348 0.79048 0.81919 0.87921 1.90656 1.57861 1.71738 1.25208 1.47978 1.57205 1.13894 1.12637 1.18859 0.92047 0.88784 0.86428 1.21741 0.91551 1.24100 1.19295 0.90716 1.25859 1.03899 0.94817 0.94739 1.70081 1.37124 1.27990 1.22256 0.85457 0.79208 0.77145 0.79275 1.20820 1.21305 1.17580 1.21475 0.97386 1.00951 0.80845 1.19919 1.02491 1.03958 0.81857 1.29128 0.91705 0.92028 0.94335 1.81215 1.10365 1.10756 1.13950 1.20585 0.88747 0.84794 0.75514 1.90727 1.78804 1.22596 1.51880 0.90959 0.92819 0.87872 0.87833 0.87241 0.90516 0.85239 0.98607 0.96179 0.92769 0.90116 0.88817 0.84486 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.96 127.77 1.40 2.78 16 2 N -0.62 -12.25 3.33 -842.88 -2.81 -15.06 16 3 C 0.10 1.25 7.35 86.83 0.64 1.89 16 4 C -0.12 -2.11 6.59 31.65 0.21 -1.90 16 5 C -0.15 -3.73 2.37 -11.55 -0.03 -3.75 16 6 H 0.16 2.82 5.91 -2.39 -0.01 2.81 16 7 C 0.52 19.94 6.78 87.66 0.59 20.53 16 8 O -0.58 -27.30 15.14 -3.04 -0.05 -27.35 16 9 N -0.59 -23.52 2.47 -826.17 -2.04 -25.56 16 10 C 0.26 13.39 5.17 85.63 0.44 13.84 16 11 C -0.53 -27.78 9.20 25.60 0.24 -27.54 16 12 H 0.07 3.63 7.42 -2.91 -0.02 3.61 16 13 C 0.01 0.29 5.46 84.66 0.46 0.75 16 14 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 15 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 19 C 0.12 3.63 4.98 86.38 0.43 4.06 16 20 C -0.04 -0.99 5.82 28.79 0.17 -0.82 16 21 C 0.25 6.39 15.43 89.44 1.38 7.77 16 22 N -0.48 -15.00 18.54 20.00 0.37 -14.63 16 23 C 0.52 14.66 7.12 87.90 0.63 15.28 16 24 O -0.56 -20.55 15.79 -3.05 -0.05 -20.59 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 1.06 7.93 -2.39 -0.02 1.04 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 1.88 6.88 -2.39 -0.02 1.86 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.00 -0.25 7.48 -2.38 -0.02 -0.27 16 33 H 0.02 1.08 7.86 -2.39 -0.02 1.07 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.08 2.61 7.83 -2.39 -0.02 2.59 16 36 H 0.09 2.70 4.99 -2.39 -0.01 2.69 16 37 H 0.14 2.35 6.87 -2.38 -0.02 2.34 16 38 H 0.12 3.27 7.56 -2.39 -0.02 3.25 16 Total: -1.00 -79.76 326.38 5.38 -74.39 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.08 Total: 6.45 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: 6.56 Total: 32.88 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.19 Total: -110.35 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.09 Total: -47.94 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -79.76 5.38 -74.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589833457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.232 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds