Wall clock time and date at job start Tue Mar 31 2020 00:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.35672 * 116.99817 * 179.97438 * 3 2 1 5 5 C 1.38945 * 120.02114 * 179.72305 * 4 3 2 6 6 N 1.32084 * 120.10642 * 179.78019 * 5 4 3 7 7 C 1.32035 * 120.14893 * 0.48560 * 6 5 4 8 8 C 1.39154 * 120.03865 * 359.77160 * 7 6 5 9 9 N 1.38996 * 120.05843 * 179.97438 * 8 7 6 10 10 C 1.47443 * 110.99939 * 59.89044 * 9 8 7 11 11 C 1.54316 * 107.23256 * 123.26535 * 10 9 8 12 12 C 1.55142 * 103.01995 * 22.28162 * 11 10 9 13 13 O 1.42904 * 110.99040 * 82.47485 * 12 11 10 14 14 C 1.50696 * 110.99242 * 206.25787 * 12 11 10 15 15 H 1.07998 * 120.00212 * 118.55077 * 14 12 11 16 16 C 1.37876 * 119.99760 * 298.54276 * 14 12 11 17 17 N 1.31519 * 120.00221 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99805 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46901 * 60.00943 * 18 16 14 20 20 H 1.48500 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47239 * 300.00448 * 18 16 14 22 22 C 1.47838 * 111.00520 * 180.73849 * 9 8 7 23 23 N 1.32584 * 120.01892 * 0.02562 * 4 3 2 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 29 29 H 1.08000 * 119.94829 * 0.02794 * 5 4 3 30 30 H 1.07997 * 119.98217 * 179.75807 * 7 6 5 31 31 H 1.09003 * 109.88949 * 242.66815 * 10 9 8 32 32 H 1.09000 * 109.89012 * 3.85931 * 10 9 8 33 33 H 1.08994 * 110.71032 * 140.66407 * 11 10 9 34 34 H 1.08999 * 110.70608 * 263.73047 * 11 10 9 35 35 H 0.96700 * 113.99733 * 61.45581 * 13 12 11 36 36 H 0.96999 * 119.99608 * 179.97438 * 17 16 14 37 37 H 1.08997 * 110.37615 * 332.46572 * 22 9 8 38 38 H 1.09004 * 110.37187 * 94.79986 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3513 1.5252 0.0005 5 6 3.8829 2.8089 -0.0052 6 7 5.1920 2.9840 -0.0003 7 6 6.0007 1.9403 0.0004 8 6 5.4750 0.6518 0.0008 9 7 6.3259 -0.4473 0.0010 10 6 7.1955 -0.4420 1.1917 11 6 6.9692 -1.7787 1.9289 12 6 6.4115 -2.7025 0.8143 13 8 7.4703 -3.2522 0.0276 14 6 5.5531 -3.7950 1.3980 15 1 4.5099 -3.8647 1.1276 16 6 6.0998 -4.7058 2.2770 17 7 7.3702 -4.6208 2.6066 18 14 5.0356 -6.0596 3.0010 19 1 4.4916 -6.9011 1.9050 20 1 5.8549 -6.9001 3.9108 21 1 3.9144 -5.4537 3.7632 22 6 5.5591 -1.7111 -0.0163 23 7 4.1594 0.4740 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.2245 3.6650 -0.0097 30 1 7.0707 2.0865 0.0005 31 1 8.2391 -0.3579 0.8884 32 1 6.9279 0.3904 1.8426 33 1 7.9099 -2.1685 2.3177 34 1 6.2425 -1.6576 2.7322 35 1 8.0870 -3.8035 0.5284 36 1 7.7546 -5.2613 3.2253 37 1 4.5829 -1.5691 0.4473 38 1 5.4456 -2.0721 -1.0386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:00 Heat of formation + Delta-G solvation = -24.383941 kcal Electronic energy + Delta-G solvation = -22336.552537 eV Core-core repulsion = 18987.025007 eV Total energy + Delta-G solvation = -3349.527531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24136 -38.98038 -37.97957 -35.14316 -33.45872 -32.22710 -31.97078 -30.40472 -28.62496 -28.21437 -25.39692 -24.13909 -23.37479 -22.44195 -20.69136 -19.73708 -18.28070 -17.54414 -17.01035 -16.57401 -16.40894 -15.70672 -15.19635 -14.96656 -14.27880 -14.22370 -13.94664 -13.10550 -12.91524 -12.75537 -12.71959 -12.53710 -12.22111 -11.88058 -11.73136 -11.38838 -11.35353 -11.14100 -11.00726 -10.89745 -10.69164 -10.52253 -10.43771 -10.03953 -9.36600 -9.11999 -8.96455 -8.68271 -8.22552 -7.76694 -6.29755 -4.37737 1.07618 1.33862 2.94370 3.18711 3.24040 3.26643 3.69370 3.95141 4.22982 4.42492 4.64048 4.81075 4.97920 4.98087 5.00739 5.32432 5.36774 5.43204 5.53954 5.71041 5.75504 5.77810 5.78338 5.93309 6.00692 6.15983 6.34081 6.44858 6.69960 6.86697 6.93800 7.10449 7.29273 7.33706 7.44009 7.59379 7.72452 7.97057 8.06368 8.64180 9.30144 9.40128 10.77609 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.005915 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.915619 B = 4732.582674 C = 6021.183085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.303 6.303 4 C 0.306 3.694 5 C -0.015 4.015 6 N -0.387 5.387 7 C -0.012 4.012 8 C 0.321 3.679 9 N -0.462 5.462 10 C 0.049 3.951 11 C -0.143 4.143 12 C 0.251 3.749 13 O -0.579 6.579 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.060 3.940 23 N -0.534 5.534 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.379 0.621 36 H 0.268 0.732 37 H 0.084 0.916 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 9.622 -2.191 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.209 6.209 4 C 0.122 3.878 5 C -0.177 4.177 6 N -0.101 5.101 7 C -0.176 4.176 8 C 0.086 3.914 9 N -0.178 5.178 10 C -0.075 4.075 11 C -0.182 4.182 12 C 0.211 3.789 13 O -0.388 6.388 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.065 4.065 23 N -0.270 5.270 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.186 0.814 30 H 0.187 0.813 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.629 10.026 -2.987 12.385 hybrid contribution -0.614 -1.429 1.421 2.107 sum -7.243 8.597 -1.566 11.350 Atomic orbital electron populations 1.21807 0.92935 1.03007 1.03034 1.22696 0.94741 0.80776 1.03184 1.86226 1.16297 1.31059 1.87324 1.20803 0.84608 0.90936 0.91413 1.22499 0.91997 0.94669 1.08532 1.68282 1.02971 1.32926 1.05926 1.23035 1.01115 0.87088 1.06402 1.21002 0.87211 0.93180 0.90042 1.60695 1.17614 1.02135 1.37348 1.23047 0.96764 0.99899 0.87806 1.23316 1.02984 0.92747 0.99194 1.19563 0.84780 0.89404 0.85161 1.86154 1.42281 1.69627 1.40692 1.21422 0.96729 1.12783 1.26413 0.91994 1.24988 0.95220 0.97435 0.95350 1.69710 1.11834 1.36943 1.34913 0.86513 0.80217 0.81488 0.78978 1.19967 1.21071 1.20169 1.23164 0.96484 0.85137 1.01763 1.68023 1.04964 1.33105 1.20897 0.90172 0.91721 0.91787 0.91146 0.91335 0.81401 0.81270 0.89960 0.93161 0.89501 0.92083 0.77170 0.92194 0.89798 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.80 6.04 37.16 0.22 1.03 16 3 O -0.30 -4.37 10.13 -18.72 -0.19 -4.55 16 4 C 0.31 4.87 7.49 -16.97 -0.13 4.74 16 5 C -0.01 -0.21 11.16 -17.18 -0.19 -0.41 16 6 N -0.39 -5.99 10.48 -12.75 -0.13 -6.12 16 7 C -0.01 -0.19 10.19 -17.12 -0.17 -0.37 16 8 C 0.32 5.78 6.14 -154.71 -0.95 4.83 16 9 N -0.46 -8.98 5.20 -169.89 -0.88 -9.87 16 10 C 0.05 0.91 6.45 -2.84 -0.02 0.90 16 11 C -0.14 -3.14 5.37 -24.91 -0.13 -3.27 16 12 C 0.25 6.03 0.87 -89.63 -0.08 5.95 16 13 O -0.58 -14.56 13.16 -35.23 -0.46 -15.02 16 14 C -0.54 -13.90 8.27 -34.44 -0.28 -14.19 16 15 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 16 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 17 N -0.89 -23.00 10.75 55.43 0.60 -22.41 16 18 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.06 1.31 5.55 -2.30 -0.01 1.30 16 23 N -0.53 -9.59 7.24 -12.31 -0.09 -9.68 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 28 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 29 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.17 2.33 7.99 -52.49 -0.42 1.91 16 31 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.05 0.84 7.17 -51.93 -0.37 0.47 16 33 H 0.09 1.98 7.53 -51.93 -0.39 1.59 16 34 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 35 H 0.38 9.51 7.56 45.56 0.34 9.86 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.08 1.85 6.46 -51.93 -0.34 1.51 16 38 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -27.38 316.76 -7.38 -34.76 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.51 Total: 11.80 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.46 Total: 1.21 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.51 Total: -48.08 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.65 Total: -19.57 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.38 -7.38 -34.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.375 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds