Wall clock time and date at job start Tue Mar 31 2020 00:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.35672 * 116.99817 * 179.97438 * 3 2 1 5 5 C 1.38945 * 120.02114 * 179.72305 * 4 3 2 6 6 N 1.32084 * 120.10642 * 179.78019 * 5 4 3 7 7 C 1.32035 * 120.14893 * 0.48560 * 6 5 4 8 8 C 1.39154 * 120.03865 * 359.77160 * 7 6 5 9 9 N 1.38996 * 120.05843 * 179.97438 * 8 7 6 10 10 C 1.47443 * 110.99939 * 59.89044 * 9 8 7 11 11 C 1.54316 * 107.23256 * 123.26535 * 10 9 8 12 12 C 1.55142 * 103.01995 * 22.28162 * 11 10 9 13 13 O 1.42904 * 110.99040 * 82.47485 * 12 11 10 14 14 C 1.50696 * 110.99242 * 206.25787 * 12 11 10 15 15 H 1.07998 * 120.00212 * 118.55077 * 14 12 11 16 16 C 1.37876 * 119.99760 * 298.54276 * 14 12 11 17 17 N 1.31519 * 120.00221 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99805 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46901 * 60.00943 * 18 16 14 20 20 H 1.48500 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47239 * 300.00448 * 18 16 14 22 22 C 1.47838 * 111.00520 * 180.73849 * 9 8 7 23 23 N 1.32584 * 120.01892 * 0.02562 * 4 3 2 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 29 29 H 1.08000 * 119.94829 * 0.02794 * 5 4 3 30 30 H 1.07997 * 119.98217 * 179.75807 * 7 6 5 31 31 H 1.09003 * 109.88949 * 242.66815 * 10 9 8 32 32 H 1.09000 * 109.89012 * 3.85931 * 10 9 8 33 33 H 1.08994 * 110.71032 * 140.66407 * 11 10 9 34 34 H 1.08999 * 110.70608 * 263.73047 * 11 10 9 35 35 H 0.96700 * 113.99733 * 61.45581 * 13 12 11 36 36 H 0.96999 * 119.99608 * 179.97438 * 17 16 14 37 37 H 1.08997 * 110.37615 * 332.46572 * 22 9 8 38 38 H 1.09004 * 110.37187 * 94.79986 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3513 1.5252 0.0005 5 6 3.8829 2.8089 -0.0052 6 7 5.1920 2.9840 -0.0003 7 6 6.0007 1.9403 0.0004 8 6 5.4750 0.6518 0.0008 9 7 6.3259 -0.4473 0.0010 10 6 7.1955 -0.4420 1.1917 11 6 6.9692 -1.7787 1.9289 12 6 6.4115 -2.7025 0.8143 13 8 7.4703 -3.2522 0.0276 14 6 5.5531 -3.7950 1.3980 15 1 4.5099 -3.8647 1.1276 16 6 6.0998 -4.7058 2.2770 17 7 7.3702 -4.6208 2.6066 18 14 5.0356 -6.0596 3.0010 19 1 4.4916 -6.9011 1.9050 20 1 5.8549 -6.9001 3.9108 21 1 3.9144 -5.4537 3.7632 22 6 5.5591 -1.7111 -0.0163 23 7 4.1594 0.4740 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.2245 3.6650 -0.0097 30 1 7.0707 2.0865 0.0005 31 1 8.2391 -0.3579 0.8884 32 1 6.9279 0.3904 1.8426 33 1 7.9099 -2.1685 2.3177 34 1 6.2425 -1.6576 2.7322 35 1 8.0870 -3.8035 0.5284 36 1 7.7546 -5.2613 3.2253 37 1 4.5829 -1.5691 0.4473 38 1 5.4456 -2.0721 -1.0386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:00 Heat of formation + Delta-G solvation = -45.029988 kcal Electronic energy + Delta-G solvation = -22337.447817 eV Core-core repulsion = 18987.025007 eV Total energy + Delta-G solvation = -3350.422810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53228 -40.40214 -39.31805 -36.85295 -34.80026 -34.21407 -33.09765 -31.78793 -30.20989 -29.77036 -27.07676 -25.47808 -24.76941 -23.53707 -22.21987 -21.50458 -19.65111 -19.02785 -18.63702 -17.75269 -17.61866 -17.23084 -16.91936 -16.68066 -15.90015 -15.38579 -15.35295 -14.67720 -14.53106 -14.03636 -13.89839 -13.64383 -13.59503 -13.51493 -13.24114 -13.07575 -12.81472 -12.65977 -12.45369 -12.35774 -12.29424 -12.19391 -11.98792 -11.64215 -11.21382 -10.65389 -10.42477 -10.31922 -10.13414 -9.13745 -8.25211 -6.40166 -0.18500 0.07641 1.39819 1.41408 1.48510 1.81948 2.32026 2.40328 2.67456 3.00157 3.10810 3.46682 3.49504 3.82266 3.96191 4.01125 4.05186 4.12807 4.25027 4.36500 4.40655 4.42863 4.66863 4.71153 4.76640 4.91192 4.96511 5.06263 5.11207 5.18480 5.34827 5.43842 5.50462 5.75184 5.81172 6.06433 6.09755 6.31434 6.63198 6.73436 7.30665 7.41367 8.80349 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.005915 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.915619 B = 4732.582674 C = 6021.183085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 O -0.300 6.300 4 C 0.292 3.708 5 C 0.004 3.996 6 N -0.391 5.391 7 C -0.003 4.003 8 C 0.295 3.705 9 N -0.465 5.465 10 C 0.058 3.942 11 C -0.134 4.134 12 C 0.237 3.763 13 O -0.587 6.587 14 C -0.562 4.562 15 H 0.051 0.949 16 C 0.035 3.965 17 N -0.907 5.907 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.274 1.274 22 C 0.074 3.926 23 N -0.555 5.555 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.204 0.796 30 H 0.191 0.809 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.375 0.625 36 H 0.270 0.730 37 H 0.076 0.924 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 11.046 -2.002 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 O -0.205 6.205 4 C 0.109 3.891 5 C -0.159 4.159 6 N -0.105 5.105 7 C -0.166 4.166 8 C 0.061 3.939 9 N -0.182 5.182 10 C -0.067 4.067 11 C -0.173 4.173 12 C 0.197 3.803 13 O -0.395 6.395 14 C -0.600 4.600 15 H 0.070 0.930 16 C -0.166 4.166 17 N -0.546 5.546 18 Si 0.782 3.218 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.199 1.199 22 C -0.052 4.052 23 N -0.290 5.290 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.208 0.792 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.224 0.776 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.462 11.470 -2.804 13.968 hybrid contribution -0.440 -1.806 1.351 2.298 sum -7.902 9.664 -1.453 12.568 Atomic orbital electron populations 1.21805 0.90008 1.04216 1.03903 1.22808 0.96979 0.80075 1.01755 1.86243 1.15481 1.31639 1.87158 1.21100 0.85032 0.91125 0.91881 1.23100 0.92131 0.95106 1.05514 1.68414 1.03347 1.32425 1.06326 1.23296 1.02207 0.86122 1.05003 1.21078 0.87218 0.93393 0.92189 1.60724 1.17866 1.01518 1.38075 1.23003 0.97634 0.98372 0.87661 1.23075 1.01518 0.94349 0.98343 1.19733 0.84681 0.89700 0.86180 1.86143 1.42487 1.69692 1.41129 1.21664 0.96701 1.14266 1.27361 0.93037 1.25620 0.96366 0.99108 0.95513 1.69781 1.12588 1.37324 1.34861 0.85639 0.78856 0.79072 0.78229 1.20011 1.20347 1.19906 1.22835 0.96115 0.86082 1.00198 1.67911 1.05447 1.34638 1.21038 0.88808 0.90984 0.90717 0.92935 0.92484 0.77950 0.79169 0.88332 0.91208 0.90795 0.93708 0.77592 0.92014 0.90588 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.06 1.52 6.04 71.98 0.43 1.96 16 3 O -0.30 -8.22 10.13 -89.89 -0.91 -9.13 16 4 C 0.29 8.89 7.49 84.75 0.63 9.52 16 5 C 0.00 0.11 11.16 84.82 0.95 1.06 16 6 N -0.39 -11.02 10.48 -194.25 -2.04 -13.05 16 7 C 0.00 -0.10 10.19 84.88 0.87 0.76 16 8 C 0.30 10.36 6.14 132.96 0.82 11.18 16 9 N -0.47 -17.95 5.20 -691.42 -3.60 -21.55 16 10 C 0.06 2.09 6.45 86.65 0.56 2.65 16 11 C -0.13 -5.92 5.37 31.78 0.17 -5.75 16 12 C 0.24 11.63 0.87 -10.15 -0.01 11.62 16 13 O -0.59 -30.09 13.16 -148.98 -1.96 -32.05 16 14 C -0.56 -29.89 8.27 25.60 0.21 -29.67 16 15 H 0.05 2.76 7.79 -2.91 -0.02 2.74 16 16 C 0.04 1.83 5.29 84.65 0.45 2.27 16 17 N -0.91 -46.98 10.75 21.45 0.23 -46.75 16 18 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C 0.07 3.32 5.55 86.77 0.48 3.80 16 23 N -0.55 -19.71 7.24 -305.57 -2.21 -21.92 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 29 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.19 4.69 7.99 -2.91 -0.02 4.67 16 31 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.07 2.23 7.17 -2.39 -0.02 2.22 16 33 H 0.07 3.42 7.53 -2.39 -0.02 3.41 16 34 H 0.04 2.08 8.04 -2.39 -0.02 2.06 16 35 H 0.38 19.30 7.56 -74.06 -0.56 18.74 16 36 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 37 H 0.08 3.47 6.46 -2.39 -0.02 3.45 16 38 H 0.06 2.77 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -58.43 316.76 -1.64 -60.07 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.52 Total: 33.32 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.30 Total: 7.63 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -7.61 Total: -103.27 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -2.87 Total: -41.18 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -58.43 -1.64 -60.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.042 kcal (2) G-P(sol) polarization free energy of solvation -58.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds