Wall clock time and date at job start Tue Mar 31 2020 00:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35759 * 116.99925 * 180.02562 * 3 2 1 5 5 N 1.32257 * 120.11591 * 0.02562 * 4 3 2 6 6 C 1.32416 * 120.02097 * 179.97438 * 5 4 3 7 7 C 1.37955 * 120.25498 * 359.97438 * 6 5 4 8 8 N 1.32392 * 120.23693 * 0.02562 * 7 6 5 9 9 C 1.32459 * 119.97607 * 359.76732 * 8 7 6 10 10 N 1.39184 * 120.12989 * 180.25628 * 9 8 7 11 11 C 1.47439 * 111.00105 * 240.07721 * 10 9 8 12 12 C 1.54319 * 107.23477 * 123.25876 * 11 10 9 13 13 C 1.55140 * 103.01405 * 22.28318 * 12 11 10 14 14 O 1.42898 * 110.99236 * 82.47867 * 13 12 11 15 15 C 1.50703 * 110.98597 * 206.25386 * 13 12 11 16 16 H 1.08002 * 119.99781 * 118.55349 * 15 13 12 17 17 C 1.37874 * 120.00570 * 298.54701 * 15 13 12 18 18 N 1.31517 * 119.99528 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00301 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47053 * 89.99937 * 19 17 15 21 21 H 1.48499 * 109.46785 * 210.00269 * 19 17 15 22 22 H 1.48500 * 109.46983 * 329.99840 * 19 17 15 23 23 C 1.47838 * 111.00050 * 0.92327 * 10 9 8 24 24 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 25 25 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 28 28 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 29 29 H 1.07996 * 119.87699 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.88661 * 180.02562 * 7 6 5 31 31 H 1.08997 * 109.89213 * 242.66603 * 11 10 9 32 32 H 1.09008 * 109.89075 * 3.85363 * 11 10 9 33 33 H 1.08996 * 110.71025 * 140.66739 * 12 11 10 34 34 H 1.09001 * 110.70448 * 263.72796 * 12 11 10 35 35 H 0.96709 * 113.99572 * 61.44768 * 14 13 12 36 36 H 0.96998 * 119.99487 * 179.97438 * 18 17 15 37 37 H 1.09001 * 110.37378 * 332.46152 * 23 10 9 38 38 H 1.09001 * 110.37635 * 94.80195 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 -0.0005 5 7 4.1600 0.4779 -0.0015 6 6 5.4725 0.6536 -0.0026 7 6 6.0033 1.9269 -0.0032 8 7 5.2041 2.9824 -0.0022 9 6 3.8899 2.8174 -0.0053 10 7 3.0467 3.9248 -0.0096 11 6 2.1772 3.9315 1.1811 12 6 2.4143 5.2694 1.9128 13 6 2.9795 6.1839 0.7943 14 8 1.9252 6.7390 0.0054 15 6 3.8467 7.2719 1.3735 16 1 4.8905 7.3319 1.1027 17 6 3.3077 8.1907 2.2488 18 7 2.0367 8.1173 2.5787 19 14 4.3825 9.5397 2.9660 20 1 4.3398 10.7304 2.0798 21 1 3.8808 9.9078 4.3144 22 1 5.7813 9.0530 3.0743 23 6 3.8238 5.1822 -0.0323 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 6.1299 -0.2032 -0.0030 30 1 7.0747 2.0633 -0.0044 31 1 1.1330 3.8546 0.8782 32 1 2.4380 3.0997 1.8355 33 1 1.4768 5.6684 2.3000 34 1 3.1401 5.1456 2.7166 35 1 1.3130 7.2974 0.5041 36 1 1.6575 8.7635 3.1948 37 1 4.7988 5.0342 0.4320 38 1 3.9401 5.5381 -1.0559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:05 Heat of formation + Delta-G solvation = -20.272795 kcal Electronic energy + Delta-G solvation = -22478.577364 eV Core-core repulsion = 19129.228107 eV Total energy + Delta-G solvation = -3349.349258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24162 -38.50111 -38.16065 -35.07093 -33.41883 -32.14010 -31.89743 -30.35704 -28.31291 -28.26713 -25.38802 -24.06682 -23.33118 -22.43245 -20.52727 -19.62430 -18.40866 -17.44446 -17.37521 -16.36077 -16.31323 -15.23434 -14.88412 -14.84517 -14.40271 -14.18161 -13.83714 -13.33944 -12.74712 -12.74274 -12.61807 -12.49982 -12.08049 -11.83340 -11.58154 -11.35226 -11.27076 -11.08412 -10.93527 -10.80866 -10.65144 -10.42036 -10.35852 -9.96367 -9.26646 -9.13281 -8.92609 -8.59867 -8.11874 -7.49872 -6.21486 -4.28953 1.07160 1.32428 2.99868 3.23629 3.30538 3.34194 3.77750 4.06504 4.27219 4.31429 4.55038 4.96153 4.97775 5.03433 5.06996 5.27298 5.31176 5.43918 5.60448 5.62034 5.79767 5.88601 5.94706 5.99584 6.11953 6.19859 6.48211 6.59192 6.88112 6.99539 7.10572 7.19598 7.39449 7.44602 7.46104 7.70359 7.81153 8.02303 8.16578 8.73711 9.39016 9.49826 10.85935 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.005225 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.535068 B = 5357.472189 C = 6176.326798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.286 6.286 4 C 0.263 3.737 5 N -0.486 5.486 6 C 0.034 3.966 7 C 0.036 3.964 8 N -0.449 5.449 9 C 0.276 3.724 10 N -0.453 5.453 11 C 0.061 3.939 12 C -0.144 4.144 13 C 0.251 3.749 14 O -0.579 6.579 15 C -0.533 4.533 16 H 0.063 0.937 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.059 3.941 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.378 0.622 36 H 0.267 0.733 37 H 0.085 0.915 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -14.778 -2.262 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.191 6.191 4 C 0.074 3.926 5 N -0.215 5.215 6 C -0.122 4.122 7 C -0.122 4.122 8 N -0.170 5.170 9 C 0.036 3.964 10 N -0.170 5.170 11 C -0.064 4.064 12 C -0.183 4.183 13 C 0.211 3.789 14 O -0.387 6.387 15 C -0.571 4.571 16 H 0.082 0.918 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.066 4.066 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.183 0.817 30 H 0.185 0.815 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.227 0.773 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.915 -14.849 -3.059 15.188 hybrid contribution 0.841 0.697 1.436 1.804 sum 1.756 -14.152 -1.624 14.352 Atomic orbital electron populations 1.21798 0.92940 1.02523 1.03691 1.22596 0.94962 0.81641 1.01965 1.86423 1.15503 1.29637 1.87521 1.20300 0.85218 0.89630 0.97443 1.67947 1.05789 1.32274 1.15530 1.23096 0.90244 0.98275 1.00598 1.23374 1.00932 0.88695 0.99173 1.68519 1.02262 1.33468 1.12712 1.20410 0.88933 0.90260 0.96837 1.60715 1.17388 1.01400 1.37483 1.22878 0.96929 0.98908 0.87728 1.23326 1.02764 0.93006 0.99198 1.19568 0.84830 0.89331 0.85203 1.86159 1.42883 1.68949 1.40724 1.21501 0.96686 1.12534 1.26392 0.91835 1.24991 0.95224 0.97463 0.95380 1.69732 1.12007 1.36619 1.35181 0.86457 0.80643 0.81867 0.78243 1.20401 1.21145 1.19761 1.23187 0.96409 0.85280 1.01752 0.91481 0.91459 0.90592 0.92016 0.91967 0.81727 0.81533 0.90174 0.94001 0.89680 0.92215 0.77278 0.92357 0.89667 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.79 6.05 37.16 0.22 1.02 16 3 O -0.29 -4.71 8.71 -18.99 -0.17 -4.88 16 4 C 0.26 4.58 6.95 -16.72 -0.12 4.46 16 5 N -0.49 -7.41 9.39 -12.97 -0.12 -7.53 16 6 C 0.03 0.43 11.20 -17.40 -0.19 0.24 16 7 C 0.04 0.49 11.20 -17.41 -0.20 0.30 16 8 N -0.45 -8.13 8.35 -12.10 -0.10 -8.23 16 9 C 0.28 5.32 6.16 -154.48 -0.95 4.37 16 10 N -0.45 -9.61 5.10 -169.66 -0.87 -10.47 16 11 C 0.06 1.25 5.66 -2.84 -0.02 1.23 16 12 C -0.14 -3.34 5.37 -24.91 -0.13 -3.47 16 13 C 0.25 6.30 0.87 -89.63 -0.08 6.23 16 14 O -0.58 -15.17 13.16 -35.23 -0.46 -15.64 16 15 C -0.53 -14.33 8.27 -34.44 -0.28 -14.61 16 16 H 0.06 1.71 7.79 -52.49 -0.41 1.30 16 17 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 18 N -0.90 -23.71 10.75 55.43 0.60 -23.12 16 19 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C 0.06 1.37 5.56 -2.30 -0.01 1.35 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.04 0.81 7.06 -51.92 -0.37 0.45 16 33 H 0.08 2.05 7.54 -51.93 -0.39 1.66 16 34 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 35 H 0.38 9.86 7.56 45.56 0.34 10.20 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.09 1.97 6.47 -51.93 -0.34 1.63 16 38 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -29.53 314.99 -7.38 -36.91 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.51 Total: 10.81 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.47 Total: 1.78 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.49 Total: -49.35 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.63 Total: -20.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.53 -7.38 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.639 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds