Wall clock time and date at job start Tue Mar 31 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35759 * 116.99925 * 180.02562 * 3 2 1 5 5 N 1.32257 * 120.11591 * 0.02562 * 4 3 2 6 6 C 1.32416 * 120.02097 * 179.97438 * 5 4 3 7 7 C 1.37955 * 120.25498 * 359.97438 * 6 5 4 8 8 N 1.32392 * 120.23693 * 0.02562 * 7 6 5 9 9 C 1.32459 * 119.97607 * 359.76732 * 8 7 6 10 10 N 1.39184 * 120.12989 * 180.25628 * 9 8 7 11 11 C 1.47439 * 111.00105 * 240.07721 * 10 9 8 12 12 C 1.54319 * 107.23477 * 123.25876 * 11 10 9 13 13 C 1.55140 * 103.01405 * 22.28318 * 12 11 10 14 14 O 1.42898 * 110.99236 * 82.47867 * 13 12 11 15 15 C 1.50703 * 110.98597 * 206.25386 * 13 12 11 16 16 H 1.08002 * 119.99781 * 118.55349 * 15 13 12 17 17 C 1.37874 * 120.00570 * 298.54701 * 15 13 12 18 18 N 1.31517 * 119.99528 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00301 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47053 * 89.99937 * 19 17 15 21 21 H 1.48499 * 109.46785 * 210.00269 * 19 17 15 22 22 H 1.48500 * 109.46983 * 329.99840 * 19 17 15 23 23 C 1.47838 * 111.00050 * 0.92327 * 10 9 8 24 24 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 25 25 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 28 28 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 29 29 H 1.07996 * 119.87699 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.88661 * 180.02562 * 7 6 5 31 31 H 1.08997 * 109.89213 * 242.66603 * 11 10 9 32 32 H 1.09008 * 109.89075 * 3.85363 * 11 10 9 33 33 H 1.08996 * 110.71025 * 140.66739 * 12 11 10 34 34 H 1.09001 * 110.70448 * 263.72796 * 12 11 10 35 35 H 0.96709 * 113.99572 * 61.44768 * 14 13 12 36 36 H 0.96998 * 119.99487 * 179.97438 * 18 17 15 37 37 H 1.09001 * 110.37378 * 332.46152 * 23 10 9 38 38 H 1.09001 * 110.37635 * 94.80195 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 -0.0005 5 7 4.1600 0.4779 -0.0015 6 6 5.4725 0.6536 -0.0026 7 6 6.0033 1.9269 -0.0032 8 7 5.2041 2.9824 -0.0022 9 6 3.8899 2.8174 -0.0053 10 7 3.0467 3.9248 -0.0096 11 6 2.1772 3.9315 1.1811 12 6 2.4143 5.2694 1.9128 13 6 2.9795 6.1839 0.7943 14 8 1.9252 6.7390 0.0054 15 6 3.8467 7.2719 1.3735 16 1 4.8905 7.3319 1.1027 17 6 3.3077 8.1907 2.2488 18 7 2.0367 8.1173 2.5787 19 14 4.3825 9.5397 2.9660 20 1 4.3398 10.7304 2.0798 21 1 3.8808 9.9078 4.3144 22 1 5.7813 9.0530 3.0743 23 6 3.8238 5.1822 -0.0323 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 6.1299 -0.2032 -0.0030 30 1 7.0747 2.0633 -0.0044 31 1 1.1330 3.8546 0.8782 32 1 2.4380 3.0997 1.8355 33 1 1.4768 5.6684 2.3000 34 1 3.1401 5.1456 2.7166 35 1 1.3130 7.2974 0.5041 36 1 1.6575 8.7635 3.1948 37 1 4.7988 5.0342 0.4320 38 1 3.9401 5.5381 -1.0559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:04 Heat of formation + Delta-G solvation = -43.584933 kcal Electronic energy + Delta-G solvation = -22479.588255 eV Core-core repulsion = 19129.228107 eV Total energy + Delta-G solvation = -3350.360148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.50361 -40.08015 -39.40363 -36.83933 -34.72462 -34.19500 -33.03776 -31.70007 -30.10597 -29.74680 -27.08742 -25.41797 -24.67661 -23.51832 -22.14502 -21.47071 -19.57158 -19.21663 -18.69924 -17.95669 -17.55694 -16.91957 -16.75725 -16.03699 -15.79128 -15.55930 -15.32773 -14.69995 -14.41762 -14.18218 -13.87399 -13.66370 -13.53510 -13.40033 -13.20595 -13.00608 -12.74110 -12.65287 -12.39410 -12.33140 -12.24575 -12.12695 -11.93789 -11.61093 -11.18612 -10.62933 -10.48741 -10.23619 -10.10297 -8.88962 -8.22485 -6.37883 -0.12642 0.11174 1.41443 1.43362 1.52889 1.88168 2.37626 2.51679 2.79055 3.02444 3.13660 3.39363 3.62390 3.91599 4.02766 4.08442 4.11262 4.17738 4.28069 4.38126 4.41184 4.44103 4.70546 4.75840 4.80885 4.95547 5.00449 5.12100 5.18272 5.25285 5.41767 5.47877 5.56369 5.78010 5.88352 6.11795 6.20961 6.37770 6.66534 6.82066 7.32959 7.43086 8.83592 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.005225 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.535068 B = 5357.472189 C = 6176.326798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.305 6.305 4 C 0.254 3.746 5 N -0.488 5.488 6 C 0.061 3.939 7 C 0.034 3.966 8 N -0.473 5.473 9 C 0.232 3.768 10 N -0.463 5.463 11 C 0.075 3.925 12 C -0.132 4.132 13 C 0.238 3.762 14 O -0.587 6.587 15 C -0.560 4.560 16 H 0.054 0.946 17 C 0.033 3.967 18 N -0.910 5.910 19 Si 0.961 3.039 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.271 1.271 23 C 0.074 3.926 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.208 0.792 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.374 0.626 36 H 0.270 0.730 37 H 0.080 0.920 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -16.755 -2.029 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.211 6.211 4 C 0.068 3.932 5 N -0.218 5.218 6 C -0.097 4.097 7 C -0.125 4.125 8 N -0.194 5.194 9 C -0.005 4.005 10 N -0.181 5.181 11 C -0.050 4.050 12 C -0.171 4.171 13 C 0.198 3.802 14 O -0.395 6.395 15 C -0.598 4.598 16 H 0.073 0.927 17 C -0.168 4.168 18 N -0.549 5.549 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.196 1.196 23 C -0.053 4.053 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.235 0.765 30 H 0.225 0.775 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.223 0.777 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.232 -16.843 -2.835 17.225 hybrid contribution 0.566 1.128 1.352 1.850 sum 2.799 -15.714 -1.483 16.030 Atomic orbital electron populations 1.21828 0.91234 1.04266 1.03110 1.22862 0.96289 0.80056 1.02343 1.86399 1.15310 1.31985 1.87434 1.20229 0.85875 0.89350 0.97717 1.68109 1.06815 1.31267 1.15567 1.24022 0.89814 0.99648 0.96170 1.24133 1.02369 0.88202 0.97811 1.68418 1.02365 1.35951 1.12651 1.20330 0.89427 0.90224 1.00527 1.60716 1.18061 1.01256 1.38033 1.22683 0.97154 0.97379 0.87819 1.23090 1.01327 0.94267 0.98458 1.19746 0.84721 0.89668 0.86111 1.86149 1.43157 1.69012 1.41201 1.21722 0.96656 1.13990 1.27481 0.92732 1.25669 0.96447 0.99197 0.95456 1.69811 1.12915 1.37054 1.35108 0.85519 0.79060 0.79152 0.77662 1.20136 1.20391 1.19589 1.22875 0.96119 0.86062 1.00224 0.92003 0.92072 0.87633 0.91513 0.91533 0.76535 0.77534 0.90083 0.93141 0.91105 0.93566 0.77708 0.92068 0.90201 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.06 1.39 6.05 71.98 0.44 1.83 16 3 O -0.31 -9.93 8.71 -90.85 -0.79 -10.73 16 4 C 0.25 8.61 6.95 85.05 0.59 9.20 16 5 N -0.49 -13.56 9.39 -307.76 -2.89 -16.46 16 6 C 0.06 1.30 11.20 84.54 0.95 2.24 16 7 C 0.03 0.81 11.20 84.54 0.95 1.76 16 8 N -0.47 -16.72 8.35 -192.18 -1.60 -18.33 16 9 C 0.23 8.93 6.16 133.19 0.82 9.76 16 10 N -0.46 -20.11 5.10 -690.67 -3.52 -23.64 16 11 C 0.08 3.17 5.66 86.65 0.49 3.66 16 12 C -0.13 -6.36 5.37 31.78 0.17 -6.19 16 13 C 0.24 12.35 0.87 -10.16 -0.01 12.34 16 14 O -0.59 -31.90 13.16 -148.98 -1.96 -33.86 16 15 C -0.56 -30.93 8.27 25.60 0.21 -30.71 16 16 H 0.05 3.02 7.79 -2.91 -0.02 3.00 16 17 C 0.03 1.77 5.29 84.65 0.45 2.22 16 18 N -0.91 -48.82 10.75 21.45 0.23 -48.59 16 19 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.07 3.52 5.56 86.77 0.48 4.00 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 28 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 29 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.05 2.00 7.06 -2.38 -0.02 1.98 16 33 H 0.07 3.54 7.54 -2.39 -0.02 3.52 16 34 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 35 H 0.37 20.28 7.56 -74.05 -0.56 19.72 16 36 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.08 3.82 6.47 -2.39 -0.02 3.80 16 38 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -65.45 314.99 -1.72 -67.17 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.52 Total: 31.78 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.28 Total: 8.13 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -7.79 Total: -107.01 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -2.75 Total: -44.59 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -65.45 -1.72 -67.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.586 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds