Wall clock time and date at job start Tue Mar 31 2020 00:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47434 * 2 1 4 4 C 1.36011 * 116.99908 * 179.97438 * 3 2 1 5 5 C 1.38507 * 120.06976 * 0.02562 * 4 3 2 6 6 C 1.38458 * 120.00131 * 180.02562 * 5 4 3 7 7 F 1.35095 * 119.93883 * 179.97438 * 6 5 4 8 8 C 1.38441 * 120.12500 * 359.97438 * 6 5 4 9 9 C 1.38246 * 120.13796 * 0.02562 * 8 6 5 10 10 C 1.38691 * 119.99850 * 359.72018 * 9 8 6 11 11 N 1.40111 * 120.06556 * 180.29748 * 10 9 8 12 12 C 1.46504 * 120.00121 * 354.05136 * 11 10 9 13 13 C 1.53000 * 109.47344 * 184.89348 * 12 11 10 14 14 C 1.50701 * 115.54834 * 279.27019 * 13 12 11 15 15 H 1.08002 * 119.99846 * 91.71152 * 14 13 12 16 16 C 1.37872 * 119.99794 * 271.70462 * 14 13 12 17 17 N 1.31516 * 120.00306 * 7.93134 * 16 14 13 18 18 Si 1.86807 * 119.99853 * 187.92584 * 16 14 13 19 19 H 1.48502 * 109.47090 * 90.00326 * 18 16 14 20 20 H 1.48498 * 109.47280 * 210.00421 * 18 16 14 21 21 H 1.48508 * 109.46710 * 330.00451 * 18 16 14 22 22 C 1.53002 * 117.49542 * 133.56193 * 13 12 11 23 23 C 1.53002 * 117.49655 * 64.94090 * 13 12 11 24 24 H 1.09002 * 109.46535 * 60.00296 * 1 2 3 25 25 H 1.09000 * 109.47456 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46997 * 300.00796 * 1 2 3 27 27 H 1.09002 * 109.46739 * 120.00218 * 2 1 3 28 28 H 1.09007 * 109.47495 * 239.99256 * 2 1 3 29 29 H 1.08005 * 120.00407 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.93916 * 180.02562 * 8 6 5 31 31 H 1.07995 * 119.99993 * 180.02562 * 9 8 6 32 32 H 0.97006 * 120.00350 * 174.05152 * 11 10 9 33 33 H 1.09004 * 109.46760 * 304.89341 * 12 11 10 34 34 H 1.09001 * 109.46890 * 64.89004 * 12 11 10 35 35 H 0.96995 * 119.99479 * 185.00096 * 17 16 14 36 36 H 1.08996 * 117.50068 * 0.02562 * 22 13 12 37 37 H 1.09005 * 117.49230 * 145.02255 * 22 13 12 38 38 H 1.08999 * 117.49427 * 214.97543 * 23 13 12 39 39 H 1.09000 * 117.49898 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3548 1.5253 0.0005 5 6 4.1998 0.4278 0.0005 6 6 5.5722 0.6108 0.0016 7 9 6.3952 -0.4605 0.0021 8 6 6.1027 1.8895 0.0022 9 6 5.2644 2.9888 0.0022 10 6 3.8888 2.8118 -0.0042 11 7 3.0379 3.9249 -0.0105 12 6 3.5949 5.2735 0.1212 13 6 2.4547 6.2901 0.2073 14 6 1.8355 6.6854 -1.1085 15 1 0.9796 6.1458 -1.4863 16 6 2.3616 7.7358 -1.8300 17 7 3.4921 8.2920 -1.4526 18 14 1.4689 8.3691 -3.3438 19 1 0.5210 9.4412 -2.9471 20 1 2.4567 8.9141 -4.3093 21 1 0.7190 7.2553 -3.9783 22 6 2.5437 7.3607 1.2968 23 6 1.5347 6.2180 1.4278 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5140 -0.8900 29 1 3.7882 -0.5707 0.0005 30 1 7.1737 2.0288 0.0026 31 1 5.6806 3.9853 0.0022 32 1 2.0799 3.8027 -0.1020 33 1 4.2008 5.3296 1.0255 34 1 4.2157 5.4965 -0.7466 35 1 3.8251 9.0762 -1.9161 36 1 3.4147 7.3411 1.9517 37 1 2.1543 8.3514 1.0617 38 1 0.4817 6.4569 1.2789 39 1 1.7415 5.4461 2.1690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594700965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:06 Heat of formation + Delta-G solvation = -52.167516 kcal Electronic energy + Delta-G solvation = -21531.238588 eV Core-core repulsion = 18160.586309 eV Total energy + Delta-G solvation = -3370.652278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.69436 -41.16055 -39.05355 -38.15792 -35.44028 -33.95539 -32.69632 -31.00088 -29.80689 -27.71018 -26.56996 -24.83025 -23.23292 -22.87525 -22.28157 -21.02612 -19.50112 -18.44574 -17.77061 -17.44730 -17.09199 -16.85476 -16.61730 -16.31794 -15.83565 -15.51394 -15.28754 -15.10480 -14.56703 -14.38889 -13.85601 -13.75576 -13.54533 -13.34422 -13.25965 -13.00947 -12.82838 -12.67565 -12.39058 -12.26589 -12.09363 -11.98917 -11.56169 -11.43849 -11.00053 -10.54694 -10.43930 -10.05181 -9.61600 -8.12393 -7.98335 -6.22476 0.30372 0.45128 1.40593 1.43504 1.51130 2.22956 2.42695 2.62380 2.72277 3.17386 3.44203 3.56174 3.77820 4.06968 4.09704 4.16015 4.21718 4.29511 4.40178 4.46529 4.58559 4.63072 4.73315 4.82369 4.91778 4.97573 4.97640 5.02125 5.10247 5.18696 5.27080 5.28604 5.33227 5.63202 5.66294 5.76921 5.83457 6.24664 6.38954 6.62584 6.82453 7.00602 7.46234 8.96183 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.004795 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.327424 B = 5837.411649 C = 6465.643694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.330 6.330 4 C 0.071 3.929 5 C -0.192 4.192 6 C 0.048 3.952 7 F -0.149 7.149 8 C -0.129 4.129 9 C -0.159 4.159 10 C 0.181 3.819 11 N -0.723 5.723 12 C 0.186 3.814 13 C 0.005 3.995 14 C -0.506 4.506 15 H 0.050 0.950 16 C 0.030 3.970 17 N -0.902 5.902 18 Si 0.943 3.057 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.151 4.151 23 C -0.182 4.182 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.402 0.598 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -15.531 4.083 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.245 6.245 4 C 0.022 3.978 5 C -0.212 4.212 6 C 0.027 3.973 7 F -0.128 7.128 8 C -0.148 4.148 9 C -0.182 4.182 10 C 0.075 3.925 11 N -0.350 5.350 12 C 0.061 3.939 13 C 0.004 3.996 14 C -0.544 4.544 15 H 0.068 0.932 16 C -0.170 4.170 17 N -0.539 5.539 18 Si 0.769 3.231 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.189 4.189 23 C -0.219 4.219 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.153 0.847 32 H 0.237 0.763 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.333 -15.121 4.008 15.646 hybrid contribution -0.419 0.448 -0.933 1.117 sum -0.751 -14.672 3.075 15.010 Atomic orbital electron populations 1.21798 0.91679 1.04114 1.02985 1.23039 0.96744 0.80773 1.02178 1.86050 1.17731 1.31233 1.89454 1.18137 0.83277 0.91602 1.04832 1.20976 0.92047 0.99325 1.08869 1.17141 0.87366 0.83341 1.09471 1.91429 1.71990 1.54578 1.94753 1.20938 1.01347 0.89926 1.02608 1.20449 0.90193 0.99796 1.07811 1.17695 0.90994 0.85418 0.98394 1.44735 1.08306 1.02713 1.79228 1.20684 0.95110 0.80261 0.97810 1.19074 0.95239 0.95960 0.89309 1.20644 1.13541 1.16256 1.03970 0.93227 1.25561 0.94778 0.97221 0.99486 1.70104 1.19194 1.21550 1.43051 0.85800 0.78536 0.78640 0.80131 1.20186 1.21237 1.19746 1.22418 0.99927 0.93833 1.02698 1.22925 0.96032 1.01091 1.01876 0.92363 0.87849 0.92017 0.90939 0.91286 0.82537 0.83050 0.84733 0.76348 0.94046 0.94750 0.93074 0.90500 0.92017 0.90380 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.94 5.46 71.98 0.39 1.33 16 3 O -0.33 -9.61 9.39 -93.67 -0.88 -10.49 16 4 C 0.07 2.18 6.70 22.59 0.15 2.33 16 5 C -0.19 -5.15 9.01 22.39 0.20 -4.94 16 6 C 0.05 1.35 7.30 22.37 0.16 1.51 16 7 F -0.15 -4.04 17.26 44.97 0.78 -3.26 16 8 C -0.13 -3.59 10.02 22.32 0.22 -3.37 16 9 C -0.16 -5.10 9.30 22.38 0.21 -4.89 16 10 C 0.18 6.28 6.66 38.18 0.25 6.54 16 11 N -0.72 -27.87 5.68 -338.88 -1.93 -29.79 16 12 C 0.19 7.97 4.82 86.38 0.42 8.38 16 13 C 0.00 0.23 1.39 -52.93 -0.07 0.15 16 14 C -0.51 -26.64 8.84 25.60 0.23 -26.41 16 15 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 16 C 0.03 1.62 5.36 84.65 0.45 2.08 16 17 N -0.90 -49.79 12.83 21.45 0.28 -49.52 16 18 Si 0.94 42.65 29.55 68.60 2.03 44.68 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.15 -6.76 9.24 30.60 0.28 -6.47 16 23 C -0.18 -7.43 9.91 30.60 0.30 -7.12 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 28 H 0.07 1.22 7.66 -2.38 -0.02 1.20 16 29 H 0.16 3.31 6.30 -2.91 -0.02 3.29 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.13 4.37 6.77 -2.91 -0.02 4.35 16 32 H 0.40 15.85 7.86 -92.70 -0.73 15.12 16 33 H 0.04 1.68 7.75 -2.39 -0.02 1.66 16 34 H 0.03 1.67 7.95 -2.39 -0.02 1.65 16 35 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 36 H 0.08 3.20 8.08 -2.39 -0.02 3.18 16 37 H 0.06 3.01 8.14 -2.38 -0.02 2.99 16 38 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -57.44 333.42 4.54 -52.89 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.33 Total: 28.09 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 3.95 Total: -32.60 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -1.65 Total: -79.31 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.88 Total: -10.49 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -57.44 4.54 -52.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594700965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.727 kcal (2) G-P(sol) polarization free energy of solvation -57.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds