Wall clock time and date at job start Tue Mar 31 2020 01:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34626 * 116.99714 * 179.97438 * 3 2 1 5 5 O 1.21341 * 120.00505 * 0.02562 * 4 3 2 6 6 C 1.48673 * 119.99499 * 179.97438 * 4 3 2 7 7 N 1.30697 * 119.03714 * 0.02562 * 6 4 3 8 8 C 1.35292 * 120.57167 * 179.97438 * 7 6 4 9 9 N 1.31855 * 120.59668 * 180.02562 * 8 7 6 10 10 C 1.46492 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47133 * 120.00308 * 10 9 8 12 12 C 1.52995 * 109.47436 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47455 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99426 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00207 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99743 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99984 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47150 * 89.99648 * 17 15 13 19 19 H 1.48499 * 109.46986 * 209.99478 * 17 15 13 20 20 H 1.48496 * 109.46803 * 329.99469 * 17 15 13 21 21 C 1.46855 * 118.80993 * 0.02562 * 8 7 6 22 22 C 1.35061 * 118.23765 * 359.97438 * 21 8 7 23 23 N 1.36075 * 119.02726 * 179.72570 * 6 4 3 24 24 H 0.96997 * 119.41190 * 0.02562 * 23 6 4 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 30 30 H 1.08996 * 109.47996 * 240.00520 * 10 9 8 31 31 H 1.09008 * 109.47173 * 0.02562 * 10 9 8 32 32 H 1.09006 * 109.46975 * 300.00412 * 11 10 9 33 33 H 1.08998 * 109.47279 * 59.99944 * 11 10 9 34 34 H 1.09004 * 109.47317 * 300.00359 * 12 11 10 35 35 H 1.09008 * 109.47396 * 60.00064 * 12 11 10 36 36 H 0.97007 * 120.00009 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.87827 * 180.02562 * 21 8 7 38 38 H 1.08005 * 120.36182 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5454 0.0005 5 8 4.0878 0.5832 0.0005 6 6 3.9167 2.9194 0.0000 7 7 3.1031 3.9422 -0.0005 8 6 3.5865 5.2059 -0.0005 9 7 2.7662 6.2382 -0.0005 10 6 1.3172 6.0224 -0.0010 11 6 0.7061 6.6604 1.2482 12 6 -0.8071 6.4345 1.2480 13 6 -1.4090 7.0623 2.4787 14 1 -0.7755 7.5719 3.1897 15 6 -2.7684 6.9871 2.6965 16 7 -3.2936 7.5355 3.7703 17 14 -3.8641 6.1063 1.4663 18 1 -3.9759 4.6735 1.8401 19 1 -5.2134 6.7263 1.4727 20 1 -3.2739 6.2191 0.1083 21 6 5.0412 5.4072 -0.0005 22 6 5.8372 4.3161 0.0000 23 7 5.2685 3.0749 0.0062 24 1 5.8383 2.2899 0.0106 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 0.8823 6.4772 -0.8910 31 1 1.1092 4.9523 -0.0010 32 1 1.1409 6.2055 2.1382 33 1 0.9140 7.7303 1.2485 34 1 -1.2423 6.8890 0.3579 35 1 -1.0148 5.3644 1.2479 36 1 -4.2500 7.4822 3.9237 37 1 5.4631 6.4013 0.0000 38 1 6.9118 4.4244 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596106383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:29 Heat of formation + Delta-G solvation = -22.410420 kcal Electronic energy + Delta-G solvation = -20984.086418 eV Core-core repulsion = 17634.644466 eV Total energy + Delta-G solvation = -3349.441952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50117 -40.17307 -37.24521 -36.22943 -34.14826 -33.30985 -32.09716 -31.81254 -30.40512 -26.96715 -26.36926 -23.93483 -23.29124 -22.04074 -21.04800 -19.87118 -19.38588 -18.50963 -17.38260 -17.12419 -17.08406 -16.52461 -15.41451 -15.33065 -14.57928 -14.23080 -14.10270 -13.99517 -13.69545 -13.25356 -13.06615 -12.71013 -12.40070 -12.29683 -11.91660 -11.73713 -11.57519 -11.42998 -10.97959 -10.89705 -10.76173 -10.45023 -10.35375 -9.94182 -9.59413 -9.55263 -9.06539 -8.89965 -8.43440 -7.54670 -5.94200 -3.90937 0.24946 1.24445 1.55263 2.06839 2.87085 3.38223 3.44575 3.50938 3.62936 3.66547 4.16419 4.48016 4.54871 4.63235 4.64090 4.87845 4.94289 5.12161 5.36452 5.40074 5.48041 5.56169 5.68127 5.80284 5.98545 6.02162 6.17845 6.29083 6.44411 6.62507 6.78443 6.87946 7.03753 7.09838 7.48504 7.59457 7.69219 7.90355 8.17537 8.66813 9.11751 9.68868 11.19560 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.004572 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.119422 B = 6123.404846 C = 7771.393296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.062 3.938 3 O -0.315 6.315 4 C 0.535 3.465 5 O -0.496 6.496 6 C 0.380 3.620 7 N -0.482 5.482 8 C 0.309 3.691 9 N -0.497 5.497 10 C 0.035 3.965 11 C -0.087 4.087 12 C -0.012 4.012 13 C -0.515 4.515 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.907 5.907 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.180 4.180 22 C 0.102 3.898 23 N -0.622 5.622 24 H 0.424 0.576 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.011 0.989 36 H 0.261 0.739 37 H 0.157 0.843 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.257 -16.487 -10.653 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.011 4.011 3 O -0.228 6.228 4 C 0.374 3.626 5 O -0.382 6.382 6 C 0.100 3.900 7 N -0.211 5.211 8 C 0.032 3.968 9 N -0.215 5.215 10 C -0.095 4.095 11 C -0.125 4.125 12 C -0.050 4.050 13 C -0.553 4.553 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.211 4.211 22 C -0.022 4.022 23 N -0.246 5.246 24 H 0.261 0.739 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.175 0.825 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 18.135 -15.537 -10.564 26.113 hybrid contribution 0.092 -1.464 -0.476 1.542 sum 18.227 -17.001 -11.040 27.261 Atomic orbital electron populations 1.21848 0.91692 1.03203 1.04622 1.23284 0.96220 0.78724 1.02878 1.86720 1.21071 1.33106 1.81932 1.20295 0.82228 0.86793 0.73261 1.90867 1.60758 1.41113 1.45503 1.20652 0.81268 0.92578 0.95458 1.69364 1.34918 0.99820 1.16992 1.21203 0.92625 0.85439 0.97516 1.73326 1.06421 1.26672 1.15121 1.22314 0.85962 1.01256 0.99956 1.21372 0.96971 0.99920 0.94263 1.19555 0.91558 0.96332 0.97523 1.21173 0.92987 1.35048 1.06107 0.91121 1.25029 0.98076 0.95243 0.95244 1.69928 1.12111 1.45647 1.26977 0.86763 0.79757 0.79978 0.82739 1.20340 1.21486 1.18933 1.22267 0.91368 0.99427 1.08005 1.21816 0.99176 0.82392 0.98781 1.41655 1.05318 1.09869 1.67795 0.73868 0.90693 0.91015 0.89847 0.90724 0.90598 0.90836 0.91973 0.93365 0.92414 0.96621 0.97053 0.92882 0.82517 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.32 -3.87 10.01 -40.29 -0.40 -4.28 16 4 C 0.53 6.14 8.00 35.04 0.28 6.42 16 5 O -0.50 -5.53 16.16 -19.14 -0.31 -5.84 16 6 C 0.38 4.48 7.68 -155.27 -1.19 3.29 16 7 N -0.48 -7.50 8.55 -8.93 -0.08 -7.58 16 8 C 0.31 4.95 7.60 -155.84 -1.18 3.77 16 9 N -0.50 -9.48 10.62 -59.18 -0.63 -10.11 16 10 C 0.03 0.72 6.35 -4.04 -0.03 0.69 16 11 C -0.09 -2.04 5.48 -26.73 -0.15 -2.18 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -15.73 9.66 -34.44 -0.33 -16.06 16 14 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 15 C 0.06 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.91 -29.15 13.96 55.43 0.77 -28.38 16 17 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 21 C -0.18 -1.95 10.30 -37.23 -0.38 -2.33 16 22 C 0.10 0.70 11.29 -16.59 -0.19 0.51 16 23 N -0.62 -4.85 5.30 -10.58 -0.06 -4.90 16 24 H 0.42 2.10 8.16 -40.82 -0.33 1.77 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.29 6.70 -51.92 -0.35 0.94 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 35 H 0.01 0.29 7.57 -51.92 -0.39 -0.10 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.18 0.34 8.06 -52.48 -0.42 -0.08 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -37.35 332.34 -8.39 -45.74 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.26 Total: -3.18 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.77 Total: -4.56 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.01 Total: -50.97 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.71 Total: -10.11 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.35 -8.39 -45.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.326 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds