Wall clock time and date at job start Tue Mar 31 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34626 * 116.99714 * 179.97438 * 3 2 1 5 5 O 1.21341 * 120.00505 * 0.02562 * 4 3 2 6 6 C 1.48673 * 119.99499 * 179.97438 * 4 3 2 7 7 N 1.30697 * 119.03714 * 0.02562 * 6 4 3 8 8 C 1.35292 * 120.57167 * 179.97438 * 7 6 4 9 9 N 1.31855 * 120.59668 * 180.02562 * 8 7 6 10 10 C 1.46492 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47133 * 120.00308 * 10 9 8 12 12 C 1.52995 * 109.47436 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47455 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99426 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00207 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99743 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99984 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47150 * 89.99648 * 17 15 13 19 19 H 1.48499 * 109.46986 * 209.99478 * 17 15 13 20 20 H 1.48496 * 109.46803 * 329.99469 * 17 15 13 21 21 C 1.46855 * 118.80993 * 0.02562 * 8 7 6 22 22 C 1.35061 * 118.23765 * 359.97438 * 21 8 7 23 23 N 1.36075 * 119.02726 * 179.72570 * 6 4 3 24 24 H 0.96997 * 119.41190 * 0.02562 * 23 6 4 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 30 30 H 1.08996 * 109.47996 * 240.00520 * 10 9 8 31 31 H 1.09008 * 109.47173 * 0.02562 * 10 9 8 32 32 H 1.09006 * 109.46975 * 300.00412 * 11 10 9 33 33 H 1.08998 * 109.47279 * 59.99944 * 11 10 9 34 34 H 1.09004 * 109.47317 * 300.00359 * 12 11 10 35 35 H 1.09008 * 109.47396 * 60.00064 * 12 11 10 36 36 H 0.97007 * 120.00009 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.87827 * 180.02562 * 21 8 7 38 38 H 1.08005 * 120.36182 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5454 0.0005 5 8 4.0878 0.5832 0.0005 6 6 3.9167 2.9194 0.0000 7 7 3.1031 3.9422 -0.0005 8 6 3.5865 5.2059 -0.0005 9 7 2.7662 6.2382 -0.0005 10 6 1.3172 6.0224 -0.0010 11 6 0.7061 6.6604 1.2482 12 6 -0.8071 6.4345 1.2480 13 6 -1.4090 7.0623 2.4787 14 1 -0.7755 7.5719 3.1897 15 6 -2.7684 6.9871 2.6965 16 7 -3.2936 7.5355 3.7703 17 14 -3.8641 6.1063 1.4663 18 1 -3.9759 4.6735 1.8401 19 1 -5.2134 6.7263 1.4727 20 1 -3.2739 6.2191 0.1083 21 6 5.0412 5.4072 -0.0005 22 6 5.8372 4.3161 0.0000 23 7 5.2685 3.0749 0.0062 24 1 5.8383 2.2899 0.0106 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 0.8823 6.4772 -0.8910 31 1 1.1092 4.9523 -0.0010 32 1 1.1409 6.2055 2.1382 33 1 0.9140 7.7303 1.2485 34 1 -1.2423 6.8890 0.3579 35 1 -1.0148 5.3644 1.2479 36 1 -4.2500 7.4822 3.9237 37 1 5.4631 6.4013 0.0000 38 1 6.9118 4.4244 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596106383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:28 Heat of formation + Delta-G solvation = -49.087735 kcal Electronic energy + Delta-G solvation = -20985.243233 eV Core-core repulsion = 17634.644466 eV Total energy + Delta-G solvation = -3350.598767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.42077 -41.07879 -38.17238 -37.47552 -35.83642 -34.57390 -33.82147 -32.56525 -31.85823 -28.73115 -27.29033 -25.34005 -24.24763 -23.13249 -22.30812 -21.73965 -20.21274 -19.41955 -18.96056 -18.21375 -17.98362 -17.97721 -16.71459 -16.30789 -16.15133 -15.87275 -15.11804 -14.99921 -14.81311 -14.68652 -14.20633 -14.04016 -13.68798 -13.53543 -13.20197 -13.08655 -12.80248 -12.59364 -12.46301 -12.34866 -11.90454 -11.78258 -11.63660 -11.59197 -11.44404 -11.32354 -11.23250 -10.78382 -10.16831 -8.63642 -8.31356 -6.36328 -0.72259 0.43132 0.71239 1.13568 1.33711 1.36866 1.50409 2.07941 2.35926 2.63395 2.72646 3.02896 3.29823 3.63016 3.95778 3.98249 4.11867 4.14769 4.24919 4.29684 4.48236 4.67014 4.68212 4.72940 4.88138 4.88498 4.94472 4.97245 5.03105 5.15269 5.28506 5.41994 5.45569 5.54420 5.62822 5.96415 6.18743 6.26114 6.69238 6.72868 7.01304 7.27933 8.85849 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.004572 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.119422 B = 6123.404846 C = 7771.393296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.056 3.944 3 O -0.339 6.339 4 C 0.536 3.464 5 O -0.490 6.490 6 C 0.389 3.611 7 N -0.538 5.538 8 C 0.321 3.679 9 N -0.568 5.568 10 C 0.056 3.944 11 C -0.075 4.075 12 C -0.004 4.004 13 C -0.537 4.537 14 H 0.025 0.975 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.249 1.249 21 C -0.220 4.220 22 C 0.154 3.846 23 N -0.595 5.595 24 H 0.444 0.556 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.043 0.957 34 H 0.022 0.978 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.171 0.829 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.619 -19.422 -12.453 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 O -0.252 6.252 4 C 0.375 3.625 5 O -0.376 6.376 6 C 0.111 3.889 7 N -0.268 5.268 8 C 0.046 3.954 9 N -0.290 5.290 10 C -0.074 4.074 11 C -0.113 4.113 12 C -0.042 4.042 13 C -0.575 4.575 14 H 0.044 0.956 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.777 3.223 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.173 1.173 21 C -0.250 4.250 22 C 0.029 3.971 23 N -0.218 5.218 24 H 0.286 0.714 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.189 0.811 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 20.564 -18.546 -12.364 30.327 hybrid contribution -0.339 -0.794 0.169 0.879 sum 20.225 -19.340 -12.196 30.525 Atomic orbital electron populations 1.21889 0.91408 1.04617 1.03317 1.23564 0.96520 0.77453 1.04149 1.86720 1.21512 1.35182 1.81807 1.20225 0.82213 0.86655 0.73368 1.90868 1.60582 1.40811 1.45370 1.20846 0.82573 0.92163 0.93366 1.69305 1.36725 1.00421 1.20389 1.21940 0.94682 0.85201 0.93532 1.73340 1.04641 1.27829 1.23151 1.21828 0.88356 0.99750 0.97502 1.21163 0.95373 0.99149 0.95660 1.19452 0.93241 0.96015 0.95496 1.21446 0.93336 1.35573 1.07114 0.95611 1.26055 0.99655 0.95913 0.97534 1.70076 1.12976 1.46960 1.29155 0.85586 0.77447 0.79066 0.80152 1.18667 1.20256 1.17311 1.22420 0.88959 1.01824 1.11814 1.22821 1.01412 0.80234 0.92675 1.41956 1.04269 1.11588 1.64002 0.71426 0.92499 0.91747 0.87067 0.89044 0.89625 0.91578 0.92915 0.95292 0.93860 0.96005 0.96474 0.92300 0.81143 0.73845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.29 71.98 0.74 -1.64 16 2 C 0.06 0.90 6.19 71.98 0.45 1.35 16 3 O -0.34 -8.04 10.01 -55.34 -0.55 -8.59 16 4 C 0.54 11.27 8.00 70.61 0.56 11.83 16 5 O -0.49 -9.42 16.16 20.35 0.33 -9.09 16 6 C 0.39 8.35 7.68 137.12 1.05 9.40 16 7 N -0.54 -16.62 8.55 -182.17 -1.56 -18.18 16 8 C 0.32 10.31 7.60 136.49 1.04 11.35 16 9 N -0.57 -22.71 10.62 -341.13 -3.62 -26.33 16 10 C 0.06 2.44 6.35 86.38 0.55 2.99 16 11 C -0.08 -3.75 5.48 30.59 0.17 -3.58 16 12 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 13 C -0.54 -34.38 9.66 25.60 0.25 -34.14 16 14 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 15 C 0.01 0.31 5.47 84.65 0.46 0.78 16 16 N -0.95 -62.93 13.96 21.45 0.30 -62.63 16 17 Si 0.96 47.16 27.47 68.60 1.88 49.05 16 18 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 21 C -0.22 -4.22 10.30 23.79 0.25 -3.98 16 22 C 0.15 1.27 11.29 83.23 0.94 2.21 16 23 N -0.59 -6.56 5.30 -187.38 -0.99 -7.55 16 24 H 0.44 1.89 8.16 -92.71 -0.76 1.13 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.05 2.31 6.70 -2.38 -0.02 2.29 16 32 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 35 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 36 H 0.27 16.35 8.31 -92.70 -0.77 15.58 16 37 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.25 -1.12 8.06 -2.91 -0.02 -1.14 16 Total: -1.00 -88.10 332.34 2.62 -85.48 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 0.26 Total: 1.38 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 6.57 Total: -3.53 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -5.87 Total: -114.70 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.23 Total: -17.69 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.88 Total: 49.05 kcal Total: -88.10 2.62 -85.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.397 kcal (2) G-P(sol) polarization free energy of solvation -88.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds