Wall clock time and date at job start Tue Mar 31 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.47265 * 2 1 4 4 C 1.34751 * 117.00101 * 179.97438 * 3 2 1 5 5 O 1.21522 * 119.99788 * 0.02562 * 4 3 2 6 6 C 1.47383 * 120.00164 * 179.97438 * 4 3 2 7 7 N 1.34434 * 125.78160 * 359.96099 * 6 4 3 8 8 N 1.28759 * 109.51286 * 179.74322 * 7 6 4 9 9 N 1.40205 * 108.38470 * 0.45352 * 8 7 6 10 10 C 1.46499 * 126.58558 * 179.81164 * 9 8 7 11 11 C 1.53001 * 109.47259 * 275.45281 * 10 9 8 12 12 C 1.50693 * 115.55108 * 174.46298 * 11 10 9 13 13 H 1.07997 * 120.00091 * 219.84728 * 12 11 10 14 14 C 1.37875 * 120.00115 * 39.84871 * 12 11 10 15 15 N 1.31520 * 120.00109 * 9.41516 * 14 12 11 16 16 Si 1.86799 * 120.00296 * 189.41613 * 14 12 11 17 17 H 1.48496 * 109.47641 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47336 * 300.00102 * 16 14 12 19 19 H 1.48506 * 109.47167 * 59.99592 * 16 14 12 20 20 C 1.53007 * 117.51420 * 320.16205 * 11 10 9 21 21 C 1.53001 * 117.49780 * 28.79006 * 11 10 9 22 22 C 1.34779 * 106.82462 * 359.55282 * 9 8 7 23 23 C 1.50700 * 126.57985 * 180.28342 * 22 9 8 24 24 H 1.08993 * 109.47135 * 300.00434 * 1 2 3 25 25 H 1.08999 * 109.46431 * 59.99897 * 1 2 3 26 26 H 1.08998 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47135 * 239.99566 * 2 1 3 28 28 H 1.08999 * 109.46431 * 120.00103 * 2 1 3 29 29 H 1.08995 * 109.46896 * 155.45183 * 10 9 8 30 30 H 1.09000 * 109.47308 * 35.45414 * 10 9 8 31 31 H 0.96997 * 120.00133 * 174.98897 * 15 14 12 32 32 H 1.09001 * 117.49564 * 214.96979 * 20 11 10 33 33 H 1.08997 * 117.50245 * 359.97438 * 20 11 10 34 34 H 1.08996 * 117.50141 * 359.97375 * 21 11 10 35 35 H 1.08999 * 117.49822 * 145.00358 * 21 11 10 36 36 H 1.08997 * 109.47210 * 89.99860 * 23 22 9 37 37 H 1.08996 * 109.47329 * 210.00082 * 23 22 9 38 38 H 1.09004 * 109.47215 * 329.99722 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0902 0.5817 0.0005 6 6 3.9133 2.9074 0.0000 7 7 3.2060 4.0506 -0.0018 8 7 4.0118 5.0549 0.0037 9 7 5.3263 4.5672 -0.0011 10 6 6.5541 5.3664 -0.0013 11 6 6.9034 5.7643 -1.4368 12 6 8.0743 6.7013 -1.5849 13 1 8.0383 7.4999 -2.3110 14 6 9.1915 6.5390 -0.7935 15 7 9.3163 5.4653 -0.0442 16 14 10.5281 7.8439 -0.7855 17 1 11.6137 7.4350 0.1416 18 1 11.0786 7.9972 -2.1561 19 1 9.9543 9.1375 -0.3351 20 6 6.6944 4.7161 -2.5316 21 6 5.7485 5.9144 -2.4291 22 6 5.2433 3.2220 0.0004 23 6 6.3958 2.2511 0.0027 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 7.3695 4.7797 0.4217 30 1 6.4034 6.2641 0.5982 31 1 10.1335 5.3156 0.4564 32 1 7.4039 4.7043 -3.3591 33 1 6.3084 3.7426 -2.2293 34 1 4.7400 5.7292 -2.0595 35 1 5.8357 6.6908 -3.1892 36 1 6.6727 2.0182 1.0308 37 1 6.1009 1.3358 -0.5104 38 1 7.2476 2.6970 -0.5109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596296918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:04 Heat of formation + Delta-G solvation = 28.517363 kcal Electronic energy + Delta-G solvation = -22030.938099 eV Core-core repulsion = 18683.704541 eV Total energy + Delta-G solvation = -3347.233558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90936 -39.95205 -37.13442 -36.48807 -33.55160 -32.43334 -32.03826 -31.48877 -27.91893 -26.93372 -25.66806 -24.20783 -22.64292 -21.43744 -21.18962 -20.22358 -19.21776 -17.62717 -16.88353 -16.64130 -16.46930 -15.51610 -15.34094 -14.62226 -14.15591 -13.85730 -13.61453 -13.57715 -12.92337 -12.87419 -12.71763 -12.60598 -12.15751 -11.97125 -11.85988 -11.69340 -11.44240 -11.13507 -11.07031 -10.78303 -10.63860 -10.51911 -10.41744 -10.34997 -10.32060 -9.38662 -9.30876 -8.96253 -8.74257 -8.35235 -6.40639 -4.41611 1.48569 1.93633 2.48136 2.95036 3.14137 3.19925 3.23068 3.30872 4.14389 4.55536 4.70530 4.80653 4.84564 4.90461 5.03619 5.17600 5.23768 5.34049 5.51610 5.67253 5.76402 5.82776 5.84467 5.99074 6.04165 6.13245 6.21068 6.26939 6.39682 6.52544 6.59426 6.77810 6.80717 6.90360 7.16679 7.19492 7.60518 7.85328 8.05384 8.46978 8.56153 9.19994 10.65682 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.004124 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.083226 B = 6787.220236 C = 7050.796453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.342 6.342 4 C 0.565 3.435 5 O -0.512 6.512 6 C -0.121 4.121 7 N -0.200 5.200 8 N -0.068 5.068 9 N -0.329 5.329 10 C 0.143 3.857 11 C 0.040 3.960 12 C -0.485 4.485 13 H 0.070 0.930 14 C 0.069 3.931 15 N -0.891 5.891 16 Si 0.906 3.094 17 H -0.284 1.284 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.202 4.202 21 C -0.206 4.206 22 C 0.142 3.858 23 C -0.102 4.102 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.092 0.908 31 H 0.270 0.730 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 -8.798 1.778 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.257 6.257 4 C 0.408 3.592 5 O -0.400 6.400 6 C -0.258 4.258 7 N -0.074 5.074 8 N -0.049 5.049 9 N -0.112 5.112 10 C 0.025 3.975 11 C 0.039 3.961 12 C -0.523 4.523 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.528 5.528 16 Si 0.733 3.267 17 H -0.210 1.210 18 H -0.200 1.200 19 H -0.198 1.198 20 C -0.240 4.240 21 C -0.243 4.243 22 C 0.000 4.000 23 C -0.161 4.161 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.164 0.836 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.936 -7.857 1.984 12.063 hybrid contribution 1.406 -0.248 -0.125 1.433 sum -7.530 -8.105 1.858 11.218 Atomic orbital electron populations 1.21793 0.92691 1.02680 1.03728 1.23026 0.95342 0.80316 1.02543 1.86652 1.23330 1.31732 1.84036 1.19428 0.80528 0.87176 0.72036 1.90809 1.60358 1.41261 1.47547 1.19807 0.89906 0.91835 1.24275 1.74675 1.26566 0.96456 1.09685 1.81951 0.83639 1.16811 1.22464 1.51141 1.09654 1.04718 1.45668 1.22478 0.78632 0.95925 1.00441 1.19197 0.94477 0.97071 0.85360 1.20463 0.98308 1.13126 1.20356 0.91212 1.25029 0.98372 0.95662 0.94367 1.69604 1.27614 1.25579 1.30046 0.86403 0.80439 0.81610 0.78252 1.20966 1.20017 1.19817 1.23081 1.03090 0.92637 1.05207 1.23044 0.95094 1.01118 1.05083 1.21839 0.96359 0.86278 0.95477 1.20797 0.93888 0.96883 1.04519 0.91421 0.91395 0.90378 0.91208 0.91235 0.83602 0.88948 0.91958 0.89868 0.91845 0.90467 0.90187 0.89313 0.88091 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.69 6.20 37.16 0.23 0.92 16 3 O -0.34 -5.26 10.23 -40.63 -0.42 -5.68 16 4 C 0.56 9.68 7.96 34.45 0.27 9.96 16 5 O -0.51 -8.87 14.51 -19.28 -0.28 -9.14 16 6 C -0.12 -2.27 7.02 -83.57 -0.59 -2.86 16 7 N -0.20 -4.04 12.39 32.83 0.41 -3.63 16 8 N -0.07 -1.42 12.20 60.35 0.74 -0.69 16 9 N -0.33 -6.59 2.54 -56.84 -0.14 -6.73 16 10 C 0.14 3.05 5.67 -4.04 -0.02 3.03 16 11 C 0.04 0.92 2.31 -155.66 -0.36 0.56 16 12 C -0.48 -11.98 9.02 -34.44 -0.31 -12.29 16 13 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 14 C 0.07 1.66 5.26 -17.82 -0.09 1.56 16 15 N -0.89 -21.51 10.94 55.43 0.61 -20.90 16 16 Si 0.91 19.12 29.55 -169.99 -5.02 14.10 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.20 -4.40 9.64 -26.72 -0.26 -4.66 16 21 C -0.21 -4.49 9.61 -26.73 -0.26 -4.74 16 22 C 0.14 2.63 5.75 -81.87 -0.47 2.16 16 23 C -0.10 -1.63 8.91 36.01 0.32 -1.31 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.15 3.18 5.42 -51.93 -0.28 2.90 16 30 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 31 H 0.27 6.27 8.32 -40.82 -0.34 5.93 16 32 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.06 1.33 5.68 -51.93 -0.30 1.03 16 34 H 0.08 1.70 6.09 -51.93 -0.32 1.38 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.55 6.43 -51.93 -0.33 1.21 16 38 H 0.10 1.62 7.21 -51.93 -0.37 1.25 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -26.32 321.55 -5.37 -31.69 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.95 Total: 4.70 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.15 Total: -8.56 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 1.61 Total: -31.95 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.70 Total: -14.82 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.32 -5.37 -31.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596296918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.209 kcal (2) G-P(sol) polarization free energy of solvation -26.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds