Wall clock time and date at job start Tue Mar 31 2020 01:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.47265 * 2 1 4 4 C 1.34751 * 117.00101 * 179.97438 * 3 2 1 5 5 O 1.21522 * 119.99788 * 0.02562 * 4 3 2 6 6 C 1.47383 * 120.00164 * 179.97438 * 4 3 2 7 7 N 1.34434 * 125.78160 * 359.96099 * 6 4 3 8 8 N 1.28759 * 109.51286 * 179.74322 * 7 6 4 9 9 N 1.40205 * 108.38470 * 0.45352 * 8 7 6 10 10 C 1.46499 * 126.58558 * 179.81164 * 9 8 7 11 11 C 1.53001 * 109.47259 * 275.45281 * 10 9 8 12 12 C 1.50693 * 115.55108 * 174.46298 * 11 10 9 13 13 H 1.07997 * 120.00091 * 219.84728 * 12 11 10 14 14 C 1.37875 * 120.00115 * 39.84871 * 12 11 10 15 15 N 1.31520 * 120.00109 * 9.41516 * 14 12 11 16 16 Si 1.86799 * 120.00296 * 189.41613 * 14 12 11 17 17 H 1.48496 * 109.47641 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47336 * 300.00102 * 16 14 12 19 19 H 1.48506 * 109.47167 * 59.99592 * 16 14 12 20 20 C 1.53007 * 117.51420 * 320.16205 * 11 10 9 21 21 C 1.53001 * 117.49780 * 28.79006 * 11 10 9 22 22 C 1.34779 * 106.82462 * 359.55282 * 9 8 7 23 23 C 1.50700 * 126.57985 * 180.28342 * 22 9 8 24 24 H 1.08993 * 109.47135 * 300.00434 * 1 2 3 25 25 H 1.08999 * 109.46431 * 59.99897 * 1 2 3 26 26 H 1.08998 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47135 * 239.99566 * 2 1 3 28 28 H 1.08999 * 109.46431 * 120.00103 * 2 1 3 29 29 H 1.08995 * 109.46896 * 155.45183 * 10 9 8 30 30 H 1.09000 * 109.47308 * 35.45414 * 10 9 8 31 31 H 0.96997 * 120.00133 * 174.98897 * 15 14 12 32 32 H 1.09001 * 117.49564 * 214.96979 * 20 11 10 33 33 H 1.08997 * 117.50245 * 359.97438 * 20 11 10 34 34 H 1.08996 * 117.50141 * 359.97375 * 21 11 10 35 35 H 1.08999 * 117.49822 * 145.00358 * 21 11 10 36 36 H 1.08997 * 109.47210 * 89.99860 * 23 22 9 37 37 H 1.08996 * 109.47329 * 210.00082 * 23 22 9 38 38 H 1.09004 * 109.47215 * 329.99722 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0902 0.5817 0.0005 6 6 3.9133 2.9074 0.0000 7 7 3.2060 4.0506 -0.0018 8 7 4.0118 5.0549 0.0037 9 7 5.3263 4.5672 -0.0011 10 6 6.5541 5.3664 -0.0013 11 6 6.9034 5.7643 -1.4368 12 6 8.0743 6.7013 -1.5849 13 1 8.0383 7.4999 -2.3110 14 6 9.1915 6.5390 -0.7935 15 7 9.3163 5.4653 -0.0442 16 14 10.5281 7.8439 -0.7855 17 1 11.6137 7.4350 0.1416 18 1 11.0786 7.9972 -2.1561 19 1 9.9543 9.1375 -0.3351 20 6 6.6944 4.7161 -2.5316 21 6 5.7485 5.9144 -2.4291 22 6 5.2433 3.2220 0.0004 23 6 6.3958 2.2511 0.0027 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 7.3695 4.7797 0.4217 30 1 6.4034 6.2641 0.5982 31 1 10.1335 5.3156 0.4564 32 1 7.4039 4.7043 -3.3591 33 1 6.3084 3.7426 -2.2293 34 1 4.7400 5.7292 -2.0595 35 1 5.8357 6.6908 -3.1892 36 1 6.6727 2.0182 1.0308 37 1 6.1009 1.3358 -0.5104 38 1 7.2476 2.6970 -0.5109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596296918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:03 Heat of formation + Delta-G solvation = 15.457295 kcal Electronic energy + Delta-G solvation = -22031.504426 eV Core-core repulsion = 18683.704541 eV Total energy + Delta-G solvation = -3347.799885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.43096 -41.21495 -38.86034 -37.71109 -35.12178 -34.25905 -33.37172 -32.48572 -29.37425 -28.53306 -27.47237 -25.45714 -23.77479 -23.07425 -22.72721 -21.65834 -20.88690 -19.06892 -18.56559 -17.91104 -17.74312 -17.05803 -16.93796 -16.28284 -15.55170 -15.28546 -14.92628 -14.87413 -14.43795 -14.26966 -14.04157 -13.75118 -13.60092 -13.48352 -13.00403 -12.90654 -12.84087 -12.78509 -12.48658 -12.45242 -12.27859 -12.11161 -11.99502 -11.70079 -11.50340 -11.17016 -11.01936 -10.70513 -10.26602 -10.13934 -8.23538 -6.30667 0.05117 0.41497 1.04981 1.46068 1.49940 1.55917 1.64294 1.89553 2.39337 2.88928 3.14131 3.40626 3.50095 3.66636 3.80298 4.04811 4.05991 4.10847 4.34707 4.36494 4.39442 4.53460 4.57763 4.65019 4.74096 4.80353 4.86384 4.95159 4.95971 5.03793 5.12512 5.16641 5.24119 5.39708 5.41681 5.53964 5.73818 6.22780 6.55705 6.67485 6.94516 7.32807 8.81525 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.004124 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.083226 B = 6787.220236 C = 7050.796453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.568 3.432 5 O -0.515 6.515 6 C -0.126 4.126 7 N -0.207 5.207 8 N -0.090 5.090 9 N -0.334 5.334 10 C 0.158 3.842 11 C 0.027 3.973 12 C -0.511 4.511 13 H 0.060 0.940 14 C 0.037 3.963 15 N -0.901 5.901 16 Si 0.960 3.040 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.273 1.273 20 C -0.195 4.195 21 C -0.201 4.201 22 C 0.142 3.858 23 C -0.096 4.096 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.273 0.727 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 -9.915 2.050 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.411 3.589 5 O -0.404 6.404 6 C -0.264 4.264 7 N -0.080 5.080 8 N -0.069 5.069 9 N -0.118 5.118 10 C 0.039 3.961 11 C 0.025 3.975 12 C -0.549 4.549 13 H 0.078 0.922 14 C -0.165 4.165 15 N -0.538 5.538 16 Si 0.786 3.214 17 H -0.204 1.204 18 H -0.202 1.202 19 H -0.199 1.199 20 C -0.233 4.233 21 C -0.238 4.238 22 C 0.002 3.998 23 C -0.154 4.154 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.160 0.840 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.120 -8.984 2.253 12.999 hybrid contribution 1.377 0.006 -0.212 1.393 sum -7.743 -8.978 2.041 12.030 Atomic orbital electron populations 1.21836 0.90452 1.04530 1.03521 1.23446 0.97088 0.78331 1.03266 1.86643 1.22092 1.34473 1.83485 1.19181 0.81263 0.86353 0.72097 1.90797 1.60670 1.41066 1.47820 1.20161 0.90066 0.92435 1.23751 1.74643 1.26767 0.96896 1.09707 1.81933 0.83992 1.17325 1.23695 1.50993 1.09113 1.05239 1.46406 1.22140 0.78955 0.95658 0.99344 1.19257 0.94430 0.97445 0.86356 1.20623 0.99586 1.13689 1.21001 0.92229 1.25575 0.99815 0.97066 0.94003 1.69664 1.28048 1.26152 1.29892 0.85569 0.78350 0.79518 0.78011 1.20413 1.20187 1.19874 1.23029 1.02787 0.92840 1.04612 1.22994 0.94767 1.01220 1.04844 1.22292 0.97168 0.85939 0.94442 1.20856 0.92467 0.96303 1.05765 0.91541 0.91680 0.87445 0.90605 0.90418 0.84002 0.89792 0.91688 0.90262 0.91092 0.90689 0.90023 0.87311 0.87212 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.05 6.20 71.98 0.45 1.50 16 3 O -0.35 -10.34 10.23 -56.61 -0.58 -10.92 16 4 C 0.57 18.72 7.96 70.23 0.56 19.28 16 5 O -0.51 -16.92 14.51 19.77 0.29 -16.63 16 6 C -0.13 -4.64 7.02 40.79 0.29 -4.35 16 7 N -0.21 -8.27 12.39 -50.04 -0.62 -8.89 16 8 N -0.09 -3.73 12.20 37.02 0.45 -3.28 16 9 N -0.33 -13.31 2.54 -333.75 -0.85 -14.16 16 10 C 0.16 6.72 5.67 86.38 0.49 7.21 16 11 C 0.03 1.21 2.31 -52.93 -0.12 1.09 16 12 C -0.51 -25.32 9.02 25.60 0.23 -25.09 16 13 H 0.06 2.99 7.83 -2.91 -0.02 2.97 16 14 C 0.04 1.78 5.26 84.65 0.45 2.23 16 15 N -0.90 -42.85 10.94 21.45 0.23 -42.62 16 16 Si 0.96 38.72 29.55 68.60 2.03 40.75 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 C -0.19 -8.41 9.64 30.60 0.30 -8.12 16 21 C -0.20 -8.74 9.61 30.60 0.29 -8.45 16 22 C 0.14 5.16 5.75 41.74 0.24 5.40 16 23 C -0.10 -2.91 8.91 71.24 0.63 -2.28 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.14 6.17 5.42 -2.39 -0.01 6.15 16 30 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.27 12.39 8.32 -92.71 -0.77 11.62 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.07 2.92 5.68 -2.39 -0.01 2.90 16 34 H 0.07 3.30 6.09 -2.39 -0.01 3.28 16 35 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.11 3.16 6.43 -2.39 -0.02 3.15 16 38 H 0.09 2.83 7.21 -2.38 -0.02 2.81 16 Total: -1.00 -54.26 321.55 6.57 -47.69 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.08 Total: 20.99 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.54 Total: -12.94 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.78 Total: -68.94 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.29 Total: -27.55 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -54.26 6.57 -47.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596296918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.145 kcal (2) G-P(sol) polarization free energy of solvation -54.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds