Wall clock time and date at job start Tue Mar 31 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 109.47437 * 2 1 4 4 C 1.46496 * 120.00105 * 269.72856 * 3 2 1 5 5 C 1.50703 * 109.46988 * 270.27290 * 4 3 2 6 6 H 1.07994 * 120.00161 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99725 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00040 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46878 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47237 * 119.99596 * 9 7 5 12 12 H 1.48494 * 109.46928 * 239.99669 * 9 7 5 13 13 C 1.34783 * 119.99694 * 90.00444 * 3 2 1 14 14 O 1.21581 * 119.99794 * 179.72636 * 13 3 2 15 15 N 1.34774 * 120.00127 * 359.72156 * 13 3 2 16 16 C 1.39377 * 120.00198 * 174.86252 * 15 13 3 17 17 C 1.38930 * 119.66752 * 185.06176 * 16 15 13 18 18 C 1.38503 * 119.22794 * 179.73492 * 17 16 15 19 19 C 1.38600 * 118.55927 * 0.53445 * 18 17 16 20 20 C 1.38770 * 119.25979 * 359.73216 * 19 18 17 21 21 O 1.35675 * 119.64204 * 179.97438 * 20 19 18 22 22 C 1.42897 * 116.99986 * 180.02562 * 21 20 19 23 23 N 1.32331 * 120.71658 * 0.02562 * 20 19 18 24 24 H 1.09008 * 109.46981 * 299.99897 * 1 2 3 25 25 H 1.08997 * 109.47400 * 59.99212 * 1 2 3 26 26 H 1.09006 * 109.47698 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46981 * 240.00103 * 2 1 3 28 28 H 1.08997 * 109.47400 * 120.00788 * 2 1 3 29 29 H 1.08996 * 109.47551 * 30.27455 * 4 3 2 30 30 H 1.09007 * 109.46982 * 150.27765 * 4 3 2 31 31 H 0.97002 * 119.99665 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99914 * 354.87182 * 15 13 3 33 33 H 1.08003 * 120.37947 * 0.02562 * 17 16 15 34 34 H 1.08004 * 120.72106 * 180.24582 * 18 17 16 35 35 H 1.07991 * 120.36726 * 179.75430 * 19 18 17 36 36 H 1.09005 * 109.46912 * 60.00175 * 22 21 20 37 37 H 1.08999 * 109.46847 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47367 * 299.99954 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2682 2.0697 -1.2687 5 6 3.6915 1.8266 -1.7003 6 1 4.3446 1.2203 -1.0904 7 6 4.1600 2.3793 -2.8734 8 7 3.3647 3.1181 -3.6159 9 14 5.9240 2.0774 -3.4089 10 1 6.6055 1.2193 -2.4067 11 1 5.9311 1.3982 -4.7295 12 1 6.6377 3.3752 -3.5159 13 6 2.2431 2.0164 1.1673 14 8 2.6531 3.1610 1.1673 15 7 2.0131 1.3829 2.3344 16 6 2.3459 1.9994 3.5394 17 6 2.2045 1.3003 4.7316 18 6 2.5430 1.9198 5.9231 19 6 3.0028 3.2267 5.8832 20 6 3.1148 3.8692 4.6582 21 8 3.5635 5.1487 4.6101 22 6 3.6562 5.7556 3.3198 23 7 2.7877 3.2478 3.5366 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5875 1.6880 -2.0296 30 1 2.1055 3.1398 -1.1395 31 1 3.6943 3.5066 -4.4413 32 1 1.6162 0.4979 2.3359 33 1 1.8393 0.2839 4.7287 34 1 2.4464 1.3975 6.8635 35 1 3.2713 3.7392 6.7951 36 1 2.6703 5.7733 2.8550 37 1 4.0268 6.7754 3.4237 38 1 4.3415 5.1813 2.6964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596954721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:39 Heat of formation + Delta-G solvation = -7.004842 kcal Electronic energy + Delta-G solvation = -22022.529709 eV Core-core repulsion = 18673.755793 eV Total energy + Delta-G solvation = -3348.773916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72047 -39.36963 -37.64511 -35.36998 -34.35012 -32.71343 -32.00840 -30.14337 -29.74003 -27.22891 -26.57705 -23.72668 -23.08956 -22.93152 -22.10973 -19.44412 -18.63620 -17.18573 -16.80525 -16.40051 -15.91724 -15.78605 -15.60937 -14.84497 -14.75133 -14.13765 -13.94094 -13.55736 -13.41916 -13.20402 -12.98304 -12.44613 -12.19514 -12.07050 -11.77105 -11.47691 -11.21429 -11.12711 -10.93145 -10.80175 -10.55976 -10.23548 -10.12145 -9.79030 -9.59814 -9.28692 -8.73526 -8.43058 -7.90817 -7.60159 -6.03752 -4.08013 1.35891 1.47492 2.94268 3.29863 3.36091 3.37805 3.42470 3.74880 4.18607 4.28470 4.46367 4.68507 5.06734 5.11106 5.23141 5.29233 5.30609 5.45471 5.54705 5.63307 5.63449 5.79191 5.89825 5.95838 6.11821 6.17283 6.26298 6.31665 6.42756 6.68713 6.88312 7.26833 7.43890 7.54033 7.60821 7.93625 8.17056 8.24284 8.63634 8.93747 9.31354 9.57804 11.04092 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.005386 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.469744 B = 5197.853923 C = 6239.627694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.609 5.609 4 C 0.262 3.738 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.688 3.312 14 O -0.523 6.523 15 N -0.675 5.675 16 C 0.432 3.568 17 C -0.261 4.261 18 C -0.014 4.014 19 C -0.240 4.240 20 C 0.353 3.647 21 O -0.312 6.312 22 C 0.043 3.957 23 N -0.525 5.525 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.409 0.591 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -5.404 16.116 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.345 5.345 4 C 0.143 3.857 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.388 3.612 14 O -0.393 6.393 15 N -0.325 5.325 16 C 0.198 3.802 17 C -0.286 4.286 18 C -0.040 4.040 19 C -0.262 4.262 20 C 0.172 3.828 21 O -0.219 6.219 22 C -0.052 4.052 23 N -0.254 5.254 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.247 0.753 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.378 -3.811 15.148 16.222 hybrid contribution 0.662 -1.123 -0.009 1.304 sum -3.716 -4.934 15.139 16.351 Atomic orbital electron populations 1.22266 0.96728 1.01468 1.02541 1.21376 0.93500 0.84519 1.02495 1.47675 1.67436 1.13238 1.06192 1.19209 0.96117 0.93520 0.76882 1.21497 0.97067 1.31654 1.06135 0.92510 1.24916 0.97782 0.94943 0.96397 1.69941 1.35630 1.33536 1.14305 0.86461 0.84755 0.78061 0.78240 1.19894 1.20980 1.20895 1.16045 0.80070 0.85157 0.79891 1.90978 1.48294 1.15503 1.84573 1.43263 1.64582 1.20916 1.03698 1.17801 0.89743 0.87561 0.85062 1.21195 1.13550 1.02243 0.91575 1.21018 0.92341 0.92922 0.97719 1.20840 1.12175 0.96487 0.96715 1.19672 0.89138 0.85028 0.88965 1.86179 1.79484 1.22782 1.33425 1.22863 1.03483 0.96613 0.82236 1.67263 1.19402 1.09940 1.28812 0.93206 0.91745 0.92047 0.89474 0.92537 0.94834 0.93771 0.92801 0.75347 0.84850 0.84223 0.84613 0.91846 0.89260 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.15 0.38 -1.81 16 2 C 0.11 1.63 5.84 -4.05 -0.02 1.61 16 3 N -0.61 -12.83 2.46 -180.81 -0.44 -13.28 16 4 C 0.26 6.80 5.16 -5.19 -0.03 6.78 16 5 C -0.52 -14.87 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.69 14.90 8.24 -86.91 -0.72 14.18 16 14 O -0.52 -13.61 14.18 5.29 0.08 -13.53 16 15 N -0.67 -11.23 5.22 -15.83 -0.08 -11.31 16 16 C 0.43 7.19 7.42 -154.71 -1.15 6.04 16 17 C -0.26 -3.19 9.93 -39.23 -0.39 -3.58 16 18 C -0.01 -0.16 10.16 -39.35 -0.40 -0.56 16 19 C -0.24 -3.10 10.04 -39.25 -0.39 -3.49 16 20 C 0.35 5.90 7.48 -17.14 -0.13 5.77 16 21 O -0.31 -5.12 10.47 -18.73 -0.20 -5.31 16 22 C 0.04 0.69 10.38 101.05 1.05 1.74 16 23 N -0.52 -10.07 6.73 -12.44 -0.08 -10.16 16 24 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.40 8.07 -51.92 -0.42 0.98 16 28 H 0.06 0.71 6.46 -51.93 -0.34 0.37 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.41 5.16 6.51 -40.82 -0.27 4.89 16 33 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -34.82 328.54 -7.45 -42.28 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.17 Total: 2.02 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: -2.22 Total: 13.15 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.13 Total: -60.54 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.12 Total: -18.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.82 -7.45 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596954721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.272 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds