Wall clock time and date at job start Tue Mar 31 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 109.47437 * 2 1 4 4 C 1.46496 * 120.00105 * 269.72856 * 3 2 1 5 5 C 1.50703 * 109.46988 * 270.27290 * 4 3 2 6 6 H 1.07994 * 120.00161 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99725 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00040 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46878 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47237 * 119.99596 * 9 7 5 12 12 H 1.48494 * 109.46928 * 239.99669 * 9 7 5 13 13 C 1.34783 * 119.99694 * 90.00444 * 3 2 1 14 14 O 1.21581 * 119.99794 * 179.72636 * 13 3 2 15 15 N 1.34774 * 120.00127 * 359.72156 * 13 3 2 16 16 C 1.39377 * 120.00198 * 174.86252 * 15 13 3 17 17 C 1.38930 * 119.66752 * 185.06176 * 16 15 13 18 18 C 1.38503 * 119.22794 * 179.73492 * 17 16 15 19 19 C 1.38600 * 118.55927 * 0.53445 * 18 17 16 20 20 C 1.38770 * 119.25979 * 359.73216 * 19 18 17 21 21 O 1.35675 * 119.64204 * 179.97438 * 20 19 18 22 22 C 1.42897 * 116.99986 * 180.02562 * 21 20 19 23 23 N 1.32331 * 120.71658 * 0.02562 * 20 19 18 24 24 H 1.09008 * 109.46981 * 299.99897 * 1 2 3 25 25 H 1.08997 * 109.47400 * 59.99212 * 1 2 3 26 26 H 1.09006 * 109.47698 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46981 * 240.00103 * 2 1 3 28 28 H 1.08997 * 109.47400 * 120.00788 * 2 1 3 29 29 H 1.08996 * 109.47551 * 30.27455 * 4 3 2 30 30 H 1.09007 * 109.46982 * 150.27765 * 4 3 2 31 31 H 0.97002 * 119.99665 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99914 * 354.87182 * 15 13 3 33 33 H 1.08003 * 120.37947 * 0.02562 * 17 16 15 34 34 H 1.08004 * 120.72106 * 180.24582 * 18 17 16 35 35 H 1.07991 * 120.36726 * 179.75430 * 19 18 17 36 36 H 1.09005 * 109.46912 * 60.00175 * 22 21 20 37 37 H 1.08999 * 109.46847 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47367 * 299.99954 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2682 2.0697 -1.2687 5 6 3.6915 1.8266 -1.7003 6 1 4.3446 1.2203 -1.0904 7 6 4.1600 2.3793 -2.8734 8 7 3.3647 3.1181 -3.6159 9 14 5.9240 2.0774 -3.4089 10 1 6.6055 1.2193 -2.4067 11 1 5.9311 1.3982 -4.7295 12 1 6.6377 3.3752 -3.5159 13 6 2.2431 2.0164 1.1673 14 8 2.6531 3.1610 1.1673 15 7 2.0131 1.3829 2.3344 16 6 2.3459 1.9994 3.5394 17 6 2.2045 1.3003 4.7316 18 6 2.5430 1.9198 5.9231 19 6 3.0028 3.2267 5.8832 20 6 3.1148 3.8692 4.6582 21 8 3.5635 5.1487 4.6101 22 6 3.6562 5.7556 3.3198 23 7 2.7877 3.2478 3.5366 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5875 1.6880 -2.0296 30 1 2.1055 3.1398 -1.1395 31 1 3.6943 3.5066 -4.4413 32 1 1.6162 0.4979 2.3359 33 1 1.8393 0.2839 4.7287 34 1 2.4464 1.3975 6.8635 35 1 3.2713 3.7392 6.7951 36 1 2.6703 5.7733 2.8550 37 1 4.0268 6.7754 3.4237 38 1 4.3415 5.1813 2.6964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596954721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:39 Heat of formation + Delta-G solvation = -31.747987 kcal Electronic energy + Delta-G solvation = -22023.602653 eV Core-core repulsion = 18673.755793 eV Total energy + Delta-G solvation = -3349.846860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98527 -40.80616 -38.88961 -36.97699 -35.83106 -34.75373 -33.14451 -31.63198 -30.97610 -28.99567 -27.97997 -25.40326 -24.49536 -24.09388 -23.52695 -20.91991 -19.93041 -18.77838 -18.44115 -18.13299 -17.08063 -17.03593 -16.83107 -16.53841 -16.33949 -15.78682 -15.24860 -14.92958 -14.79489 -14.54310 -14.20358 -14.07649 -13.64847 -13.29871 -13.14095 -13.07543 -12.73190 -12.67759 -12.52992 -12.49113 -12.22211 -11.97637 -11.71557 -11.36426 -11.28941 -10.65092 -10.54861 -10.13829 -9.48669 -8.94713 -8.22331 -6.36913 0.23031 0.47477 1.34009 1.36806 1.47526 1.58541 2.18965 2.24905 2.38254 2.87585 2.98881 3.06893 3.53611 4.01836 4.09876 4.17258 4.35808 4.36605 4.38024 4.44151 4.50681 4.54729 4.78683 4.82203 4.95950 4.98370 5.03004 5.19770 5.28827 5.33509 5.36215 5.56900 5.64107 5.76621 5.95680 6.06716 6.28624 6.71766 6.82683 7.24627 7.31591 7.73527 8.84239 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.005386 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.469744 B = 5197.853923 C = 6239.627694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.615 5.615 4 C 0.281 3.719 5 C -0.540 4.540 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.266 1.266 12 H -0.283 1.283 13 C 0.683 3.317 14 O -0.581 6.581 15 N -0.658 5.658 16 C 0.389 3.611 17 C -0.234 4.234 18 C -0.002 4.002 19 C -0.226 4.226 20 C 0.310 3.690 21 O -0.317 6.317 22 C 0.056 3.944 23 N -0.575 5.575 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.028 0.972 30 H -0.005 1.005 31 H 0.267 0.733 32 H 0.428 0.572 33 H 0.177 0.823 34 H 0.195 0.805 35 H 0.163 0.837 36 H 0.037 0.963 37 H 0.126 0.874 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -8.178 18.865 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.351 5.351 4 C 0.159 3.841 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.191 1.191 12 H -0.209 1.209 13 C 0.384 3.616 14 O -0.455 6.455 15 N -0.311 5.311 16 C 0.157 3.843 17 C -0.258 4.258 18 C -0.027 4.027 19 C -0.248 4.248 20 C 0.131 3.869 21 O -0.225 6.225 22 C -0.039 4.039 23 N -0.305 5.305 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.270 0.730 33 H 0.194 0.806 34 H 0.212 0.788 35 H 0.180 0.820 36 H 0.056 0.944 37 H 0.144 0.856 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.345 -6.664 17.950 19.634 hybrid contribution 0.587 -0.300 -0.726 0.981 sum -3.758 -6.964 17.224 18.955 Atomic orbital electron populations 1.22181 0.94391 1.03733 1.01651 1.21730 0.95377 0.81386 1.03918 1.47546 1.67730 1.15217 1.04616 1.18603 0.95135 0.91267 0.79058 1.21726 0.98015 1.31761 1.06348 0.93314 1.25804 1.02195 0.94500 0.96415 1.70054 1.37657 1.34221 1.14776 0.85402 0.79225 0.77937 0.78411 1.19513 1.19107 1.20879 1.16266 0.79519 0.84703 0.81087 1.90941 1.50756 1.18120 1.85706 1.42825 1.64566 1.21367 1.02315 1.18315 0.92102 0.87762 0.86105 1.21684 1.10702 1.03518 0.89902 1.21685 0.89913 0.91843 0.99295 1.21321 1.10177 0.97348 0.95939 1.20195 0.91375 0.85326 0.89977 1.86156 1.80094 1.23431 1.32802 1.22698 1.01206 0.97914 0.82095 1.67021 1.20529 1.11927 1.30996 0.92658 0.94114 0.88053 0.90270 0.88854 0.95448 0.98641 0.92410 0.73032 0.80556 0.78798 0.81951 0.94397 0.85622 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.94 5.84 86.38 0.50 3.45 16 3 N -0.62 -26.84 2.46 -844.22 -2.07 -28.92 16 4 C 0.28 15.50 5.16 85.63 0.44 15.94 16 5 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 9 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 13 C 0.68 30.82 8.24 179.05 1.47 32.30 16 14 O -0.58 -32.50 14.18 -3.97 -0.06 -32.56 16 15 N -0.66 -21.54 5.22 -322.25 -1.68 -23.22 16 16 C 0.39 12.60 7.42 132.88 0.99 13.59 16 17 C -0.23 -4.74 9.93 22.50 0.22 -4.52 16 18 C 0.00 -0.04 10.16 22.42 0.23 0.19 16 19 C -0.23 -5.20 10.04 22.48 0.23 -4.97 16 20 C 0.31 10.47 7.48 84.75 0.63 11.10 16 21 O -0.32 -10.77 10.47 -89.93 -0.94 -11.71 16 22 C 0.06 1.94 10.38 113.37 1.18 3.12 16 23 N -0.58 -22.82 6.73 -306.11 -2.06 -24.88 16 24 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.08 2.51 8.07 -2.38 -0.02 2.49 16 28 H 0.09 2.09 6.46 -2.39 -0.02 2.07 16 29 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.43 9.76 6.51 -92.71 -0.60 9.15 16 33 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.16 2.80 8.06 -2.92 -0.02 2.77 16 36 H 0.04 1.46 8.10 -2.38 -0.02 1.44 16 37 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -84.12 328.54 3.30 -80.82 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.47 Total: 12.49 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: 7.33 Total: 36.53 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -5.53 Total: -133.52 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.00 Total: -44.27 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -84.12 3.30 -80.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596954721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.074 kcal (2) G-P(sol) polarization free energy of solvation -84.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds