Wall clock time and date at job start Tue Mar 31 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35674 * 117.00072 * 2 1 4 4 C 1.38817 * 119.64247 * 179.97438 * 3 2 1 5 5 C 1.38547 * 119.25841 * 179.97438 * 4 3 2 6 6 C 1.38559 * 118.55805 * 359.97438 * 5 4 3 7 7 C 1.38877 * 119.22707 * 0.02562 * 6 5 4 8 8 N 1.39389 * 119.65920 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00077 * 174.92380 * 8 7 6 10 10 O 1.21579 * 119.99969 * 5.08591 * 9 8 7 11 11 N 1.34778 * 120.00060 * 185.08506 * 9 8 7 12 12 C 1.46502 * 119.99778 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46993 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47423 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47413 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99777 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99804 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47376 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47103 * 120.00135 * 19 17 15 22 22 H 1.48505 * 109.46890 * 240.00043 * 19 17 15 23 23 N 1.32296 * 119.64355 * 359.71829 * 3 2 1 24 24 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47798 * 300.00490 * 1 2 3 26 26 H 1.09008 * 109.46991 * 60.00454 * 1 2 3 27 27 H 1.07995 * 120.36738 * 359.95169 * 4 3 2 28 28 H 1.08001 * 120.72252 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.38194 * 179.97438 * 6 5 4 30 30 H 0.96998 * 120.00145 * 354.91599 * 8 7 6 31 31 H 0.96999 * 120.00075 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.47376 * 300.00442 * 12 11 9 33 33 H 1.09002 * 109.47298 * 60.00346 * 12 11 9 34 34 H 1.09010 * 109.46923 * 299.99971 * 13 12 11 35 35 H 1.09002 * 109.47130 * 59.99858 * 13 12 11 36 36 H 1.09002 * 109.46895 * 300.00026 * 14 13 12 37 37 H 1.09006 * 109.47241 * 59.99174 * 14 13 12 38 38 H 0.97007 * 119.99797 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4316 1.2728 0.0005 5 6 4.0523 2.5115 0.0000 6 6 3.2611 3.6489 -0.0016 7 6 1.8789 3.5134 -0.0021 8 7 1.0743 4.6516 -0.0043 9 6 -0.2640 4.5306 -0.1080 10 8 -0.7766 3.4282 -0.1066 11 7 -1.0341 5.6317 -0.2133 12 6 -2.4887 5.5001 -0.3267 13 6 -3.1198 6.8899 -0.4325 14 6 -4.6391 6.7526 -0.5503 15 6 -5.2607 8.1214 -0.6539 16 1 -4.6348 9.0014 -0.6370 17 6 -6.6285 8.2504 -0.7703 18 7 -7.3907 7.1789 -0.7903 19 14 -7.3991 9.9473 -0.8980 20 1 -6.3329 10.9800 -0.8513 21 1 -8.1401 10.0592 -2.1800 22 1 -8.3368 10.1516 0.2353 23 7 1.3175 2.3139 -0.0057 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.0200 0.3672 0.0017 28 1 5.1296 2.5888 0.0000 29 1 3.7140 4.6294 -0.0017 30 1 1.4775 5.5308 0.0690 31 1 -0.6251 6.5113 -0.2149 32 1 -2.7330 4.9217 -1.2177 33 1 -2.8773 4.9905 0.5550 34 1 -2.8756 7.4686 0.4584 35 1 -2.7312 7.3992 -1.3144 36 1 -4.8836 6.1737 -1.4409 37 1 -5.0273 6.2433 0.3319 38 1 -8.3530 7.2697 -0.8718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596957293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:04 Heat of formation + Delta-G solvation = -26.583210 kcal Electronic energy + Delta-G solvation = -20694.497412 eV Core-core repulsion = 17344.874514 eV Total energy + Delta-G solvation = -3349.622898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07217 -39.71391 -37.96601 -35.60510 -34.64014 -33.34759 -32.36409 -31.24776 -29.88083 -27.28277 -26.58010 -23.94104 -23.28667 -22.69491 -20.90635 -20.44039 -18.98985 -18.10838 -17.06656 -16.42480 -16.19798 -16.15791 -15.84233 -15.56494 -14.82524 -14.42276 -14.34227 -14.29294 -13.81326 -13.43400 -13.39806 -12.47569 -12.31332 -11.89514 -11.83652 -11.77277 -11.41665 -10.93961 -10.76836 -10.59285 -10.56462 -10.44425 -9.88945 -9.67053 -9.56003 -9.26170 -9.12628 -8.80745 -8.39354 -8.16561 -6.03748 -4.06851 1.02363 1.16836 2.39841 3.05161 3.20559 3.28587 3.36168 3.39446 3.79738 3.94584 4.41362 4.44793 4.78347 4.82545 5.02052 5.15958 5.32242 5.35084 5.47413 5.58834 5.68404 5.76740 5.79593 5.97469 5.99066 6.13921 6.42006 6.46440 6.57583 6.58127 6.86129 6.97877 7.18319 7.61819 7.68177 7.74033 7.95072 8.08795 8.35806 8.64221 9.00064 9.57485 11.07596 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037087 B = 0.002695 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.800928 B =10386.530288 C =11105.380361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.310 6.310 3 C 0.352 3.648 4 C -0.232 4.232 5 C -0.014 4.014 6 C -0.254 4.254 7 C 0.425 3.575 8 N -0.672 5.672 9 C 0.689 3.311 10 O -0.531 6.531 11 N -0.737 5.737 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.528 5.528 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.414 0.586 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.877 -8.340 1.926 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.216 6.216 3 C 0.172 3.828 4 C -0.254 4.254 5 C -0.039 4.039 6 C -0.278 4.278 7 C 0.193 3.807 8 N -0.320 5.320 9 C 0.388 3.612 10 O -0.402 6.402 11 N -0.393 5.393 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.257 5.257 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.250 0.750 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.241 -9.711 1.887 24.342 hybrid contribution 0.418 2.042 -0.039 2.085 sum 22.659 -7.668 1.848 23.993 Atomic orbital electron populations 1.22866 0.76330 1.02337 1.03641 1.86209 1.23664 1.24331 1.87404 1.19655 0.88891 0.84372 0.89883 1.20919 0.91884 0.99562 1.13067 1.21085 1.00105 0.90571 0.92169 1.21224 0.91587 1.00625 1.14402 1.17692 0.86906 0.85041 0.91090 1.42875 1.06060 1.07745 1.75358 1.16107 0.80477 0.85628 0.78994 1.91014 1.71418 1.24231 1.53540 1.45460 1.08458 1.06993 1.78361 1.21560 0.75524 0.99805 1.01866 1.21898 1.00073 0.93014 1.00842 1.19031 0.87282 0.97430 0.97648 1.21233 0.91845 0.92571 1.50389 0.92595 1.25035 0.97471 0.96687 0.95306 1.69974 1.04762 1.28151 1.50352 0.86527 0.79302 0.84441 0.77656 1.19767 1.20992 1.20986 1.67165 1.39467 0.97106 1.21998 0.89022 0.91870 0.91739 0.84306 0.83913 0.84535 0.74973 0.77263 0.91792 0.91774 0.92708 0.92705 0.96229 0.96229 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 101.05 1.05 1.59 16 2 O -0.31 -4.10 10.47 -18.72 -0.20 -4.29 16 3 C 0.35 4.71 7.49 -17.14 -0.13 4.58 16 4 C -0.23 -2.32 10.04 -39.25 -0.39 -2.71 16 5 C -0.01 -0.11 10.16 -39.35 -0.40 -0.51 16 6 C -0.25 -2.23 9.93 -39.23 -0.39 -2.62 16 7 C 0.43 5.31 7.42 -154.70 -1.15 4.16 16 8 N -0.67 -7.64 5.39 -15.83 -0.09 -7.72 16 9 C 0.69 10.53 8.52 -86.92 -0.74 9.79 16 10 O -0.53 -10.33 14.60 5.30 0.08 -10.25 16 11 N -0.74 -10.28 5.56 -65.22 -0.36 -10.64 16 12 C 0.14 2.35 5.67 -4.04 -0.02 2.32 16 13 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 N -0.53 -7.98 6.73 -12.45 -0.08 -8.06 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 26 H 0.06 0.90 8.10 -51.92 -0.42 0.48 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.41 2.90 8.72 -40.82 -0.36 2.55 16 31 H 0.39 4.18 8.49 -40.82 -0.35 3.83 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -34.86 331.95 -8.11 -42.97 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.31 Total: 1.29 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.86 Total: 1.36 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.20 Total: -52.41 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.12 Total: -14.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.86 -8.11 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596957293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.384 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds