Wall clock time and date at job start Tue Mar 31 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35674 * 117.00072 * 2 1 4 4 C 1.38817 * 119.64247 * 179.97438 * 3 2 1 5 5 C 1.38547 * 119.25841 * 179.97438 * 4 3 2 6 6 C 1.38559 * 118.55805 * 359.97438 * 5 4 3 7 7 C 1.38877 * 119.22707 * 0.02562 * 6 5 4 8 8 N 1.39389 * 119.65920 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00077 * 174.92380 * 8 7 6 10 10 O 1.21579 * 119.99969 * 5.08591 * 9 8 7 11 11 N 1.34778 * 120.00060 * 185.08506 * 9 8 7 12 12 C 1.46502 * 119.99778 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46993 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47423 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47413 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99777 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99804 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47376 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47103 * 120.00135 * 19 17 15 22 22 H 1.48505 * 109.46890 * 240.00043 * 19 17 15 23 23 N 1.32296 * 119.64355 * 359.71829 * 3 2 1 24 24 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47798 * 300.00490 * 1 2 3 26 26 H 1.09008 * 109.46991 * 60.00454 * 1 2 3 27 27 H 1.07995 * 120.36738 * 359.95169 * 4 3 2 28 28 H 1.08001 * 120.72252 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.38194 * 179.97438 * 6 5 4 30 30 H 0.96998 * 120.00145 * 354.91599 * 8 7 6 31 31 H 0.96999 * 120.00075 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.47376 * 300.00442 * 12 11 9 33 33 H 1.09002 * 109.47298 * 60.00346 * 12 11 9 34 34 H 1.09010 * 109.46923 * 299.99971 * 13 12 11 35 35 H 1.09002 * 109.47130 * 59.99858 * 13 12 11 36 36 H 1.09002 * 109.46895 * 300.00026 * 14 13 12 37 37 H 1.09006 * 109.47241 * 59.99174 * 14 13 12 38 38 H 0.97007 * 119.99797 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4316 1.2728 0.0005 5 6 4.0523 2.5115 0.0000 6 6 3.2611 3.6489 -0.0016 7 6 1.8789 3.5134 -0.0021 8 7 1.0743 4.6516 -0.0043 9 6 -0.2640 4.5306 -0.1080 10 8 -0.7766 3.4282 -0.1066 11 7 -1.0341 5.6317 -0.2133 12 6 -2.4887 5.5001 -0.3267 13 6 -3.1198 6.8899 -0.4325 14 6 -4.6391 6.7526 -0.5503 15 6 -5.2607 8.1214 -0.6539 16 1 -4.6348 9.0014 -0.6370 17 6 -6.6285 8.2504 -0.7703 18 7 -7.3907 7.1789 -0.7903 19 14 -7.3991 9.9473 -0.8980 20 1 -6.3329 10.9800 -0.8513 21 1 -8.1401 10.0592 -2.1800 22 1 -8.3368 10.1516 0.2353 23 7 1.3175 2.3139 -0.0057 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.0200 0.3672 0.0017 28 1 5.1296 2.5888 0.0000 29 1 3.7140 4.6294 -0.0017 30 1 1.4775 5.5308 0.0690 31 1 -0.6251 6.5113 -0.2149 32 1 -2.7330 4.9217 -1.2177 33 1 -2.8773 4.9905 0.5550 34 1 -2.8756 7.4686 0.4584 35 1 -2.7312 7.3992 -1.3144 36 1 -4.8836 6.1737 -1.4409 37 1 -5.0273 6.2433 0.3319 38 1 -8.3530 7.2697 -0.8718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596957293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:04 Heat of formation + Delta-G solvation = -52.454898 kcal Electronic energy + Delta-G solvation = -20695.619293 eV Core-core repulsion = 17344.874514 eV Total energy + Delta-G solvation = -3350.744779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00199 -40.78960 -38.91613 -37.04109 -35.74425 -35.19624 -33.32627 -32.86369 -30.85798 -28.65612 -27.94839 -25.36771 -24.18544 -23.98216 -22.32329 -21.83758 -19.97099 -19.21739 -18.49323 -18.03369 -17.18589 -16.90581 -16.83360 -16.78056 -16.52062 -15.92572 -15.73682 -15.38212 -14.90889 -14.52098 -14.28842 -14.09737 -13.73520 -13.56119 -13.16053 -12.80007 -12.68234 -12.55089 -12.50694 -12.34185 -11.74861 -11.68081 -11.42928 -11.41553 -11.18322 -10.61110 -10.56453 -10.27180 -10.09019 -9.00651 -8.19874 -6.31285 0.18502 0.43089 1.38379 1.41877 1.42348 1.55235 2.07524 2.18170 2.41614 2.91959 2.96144 3.14207 3.57445 4.04771 4.14164 4.16647 4.22231 4.35188 4.39028 4.43439 4.51923 4.55211 4.77672 4.91509 4.94889 4.98698 5.16637 5.26255 5.29046 5.42354 5.52783 5.58194 5.70840 5.76175 5.84346 6.22128 6.26979 6.71533 6.86776 7.17745 7.38466 7.53343 8.92583 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037087 B = 0.002695 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.800928 B =10386.530288 C =11105.380361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.319 6.319 3 C 0.313 3.687 4 C -0.225 4.225 5 C -0.005 4.005 6 C -0.231 4.231 7 C 0.388 3.612 8 N -0.655 5.655 9 C 0.687 3.313 10 O -0.580 6.580 11 N -0.723 5.723 12 C 0.151 3.849 13 C -0.100 4.100 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.281 1.281 22 H -0.280 1.280 23 N -0.571 5.571 24 H 0.122 0.878 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.160 0.840 28 H 0.191 0.809 29 H 0.178 0.822 30 H 0.435 0.565 31 H 0.414 0.586 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.069 0.931 36 H -0.009 1.009 37 H -0.008 1.008 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.113 -6.306 1.994 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.226 6.226 3 C 0.134 3.866 4 C -0.247 4.247 5 C -0.030 4.030 6 C -0.254 4.254 7 C 0.157 3.843 8 N -0.306 5.306 9 C 0.386 3.614 10 O -0.455 6.455 11 N -0.380 5.380 12 C 0.027 3.973 13 C -0.137 4.137 14 C -0.015 4.015 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 N -0.301 5.301 24 H 0.141 0.859 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.178 0.822 28 H 0.208 0.792 29 H 0.195 0.805 30 H 0.276 0.724 31 H 0.251 0.749 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.560 -7.621 1.960 26.744 hybrid contribution -0.471 1.368 -0.055 1.448 sum 25.088 -6.253 1.905 25.926 Atomic orbital electron populations 1.22749 0.76600 1.03524 1.01272 1.86181 1.23432 1.25031 1.87987 1.20126 0.90260 0.83948 0.92311 1.21335 0.90457 1.01644 1.11296 1.21686 1.02244 0.89095 0.90015 1.21693 0.89701 1.02955 1.11101 1.18185 0.88492 0.84438 0.93219 1.42554 1.04396 1.08888 1.74750 1.16282 0.81732 0.84896 0.78504 1.90995 1.72767 1.26107 1.55595 1.45049 1.06900 1.07928 1.78137 1.21088 0.77599 0.98314 1.00312 1.21587 0.95820 0.94125 1.02213 1.18946 0.91515 0.95989 0.95028 1.21713 0.92460 0.93739 1.49771 0.91394 1.26040 0.98280 1.01024 0.94891 1.70123 1.05144 1.30823 1.51572 0.85358 0.78482 0.79355 0.77585 1.18066 1.20645 1.20631 1.66976 1.41570 0.98585 1.22991 0.85942 0.94099 0.94209 0.82242 0.79205 0.80504 0.72411 0.74913 0.93571 0.93490 0.91150 0.91187 0.99026 0.99002 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.45 10.38 113.37 1.18 2.62 16 2 O -0.32 -8.80 10.47 -89.91 -0.94 -9.74 16 3 C 0.31 8.45 7.49 84.76 0.63 9.09 16 4 C -0.23 -4.02 10.04 22.48 0.23 -3.79 16 5 C -0.01 -0.06 10.16 22.42 0.23 0.17 16 6 C -0.23 -3.19 9.93 22.50 0.22 -2.96 16 7 C 0.39 9.22 7.42 132.86 0.99 10.21 16 8 N -0.65 -14.05 5.39 -322.27 -1.74 -15.78 16 9 C 0.69 21.11 8.52 179.05 1.53 22.64 16 10 O -0.58 -23.77 14.60 -3.97 -0.06 -23.83 16 11 N -0.72 -19.71 5.56 -478.53 -2.66 -22.37 16 12 C 0.15 5.37 5.67 86.38 0.49 5.86 16 13 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 14 C 0.02 1.19 4.97 29.85 0.15 1.34 16 15 C -0.54 -29.91 9.11 25.60 0.23 -29.67 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 17 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 18 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 19 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 N -0.57 -17.72 6.73 -306.13 -2.06 -19.78 16 24 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.04 1.25 8.11 -2.39 -0.02 1.23 16 26 H 0.04 1.23 8.10 -2.38 -0.02 1.21 16 27 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 29 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.44 4.91 8.72 -92.71 -0.81 4.10 16 31 H 0.41 7.89 8.49 -92.71 -0.79 7.10 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -80.54 331.95 0.83 -79.70 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -0.51 Total: 11.11 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.49 Total: 12.08 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -6.17 Total: -115.03 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.00 Total: -33.57 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.54 0.83 -79.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596957293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.250 kcal (2) G-P(sol) polarization free energy of solvation -80.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds