Wall clock time and date at job start Tue Mar 31 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.46951 * 2 1 4 4 C 1.46898 * 111.00014 * 288.05852 * 3 2 1 5 5 C 1.50696 * 109.47443 * 160.35987 * 4 3 2 6 6 H 1.07998 * 119.99972 * 4.90404 * 5 4 3 7 7 C 1.37876 * 120.00346 * 184.89716 * 5 4 3 8 8 N 1.31512 * 119.99961 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99970 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47278 * 89.99507 * 9 7 5 11 11 H 1.48501 * 109.47315 * 209.99872 * 9 7 5 12 12 H 1.48502 * 109.46743 * 329.99692 * 9 7 5 13 13 C 1.46900 * 111.00223 * 164.10657 * 3 2 1 14 14 C 1.50704 * 109.46824 * 293.95406 * 13 3 2 15 15 C 1.38797 * 119.90380 * 94.72848 * 14 13 3 16 16 N 1.31755 * 120.12868 * 180.27629 * 15 14 13 17 17 C 1.33067 * 119.92050 * 359.97438 * 16 15 14 18 18 C 1.48047 * 120.09303 * 180.02562 * 17 16 15 19 19 O 1.21426 * 119.99944 * 179.97438 * 18 17 16 20 20 O 1.34687 * 120.00205 * 359.97276 * 18 17 16 21 21 C 1.45199 * 117.00000 * 179.97438 * 20 18 17 22 22 C 1.39428 * 119.80690 * 0.02562 * 17 16 15 23 23 N 1.32110 * 119.89787 * 274.99540 * 14 13 3 24 24 H 1.08993 * 109.46908 * 59.46333 * 1 2 3 25 25 H 1.09004 * 109.46881 * 179.46109 * 1 2 3 26 26 H 1.08998 * 109.47165 * 299.45743 * 1 2 3 27 27 H 1.08999 * 109.47516 * 239.99377 * 2 1 3 28 28 H 1.09010 * 109.46600 * 119.99447 * 2 1 3 29 29 H 1.09000 * 109.47499 * 280.36564 * 4 3 2 30 30 H 1.09006 * 109.46980 * 40.36591 * 4 3 2 31 31 H 0.97009 * 119.99994 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47346 * 173.95326 * 13 3 2 33 33 H 1.09000 * 109.47287 * 53.94930 * 13 3 2 34 34 H 1.08006 * 119.93320 * 0.26693 * 15 14 13 35 35 H 1.08998 * 109.47285 * 179.97438 * 21 20 18 36 36 H 1.08997 * 109.47520 * 300.01156 * 21 20 18 37 37 H 1.09007 * 109.46671 * 60.01087 * 21 20 18 38 38 H 1.08000 * 120.06644 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7943 2.0230 -1.3039 5 6 1.8457 3.5208 -1.1458 6 1 2.1056 3.9545 -0.1915 7 6 1.5610 4.3375 -2.2196 8 7 1.6064 5.6446 -2.0817 9 14 1.1108 3.5874 -3.8701 10 1 -0.3602 3.3970 -3.9426 11 1 1.5469 4.4949 -4.9617 12 1 1.7879 2.2741 -4.0180 13 6 3.4387 1.4417 0.3756 14 6 3.5966 1.0056 1.8094 15 6 3.9079 -0.3153 2.1007 16 7 4.0416 -0.7026 3.3529 17 6 3.8783 0.1747 4.3400 18 6 4.0283 -0.2562 5.7485 19 8 3.8794 0.5458 6.6479 20 8 4.3298 -1.5379 6.0322 21 6 4.4620 -1.8890 7.4348 22 6 3.5657 1.5008 4.0441 23 7 3.4331 1.8806 2.7857 24 1 -0.3633 0.5221 -0.8851 25 1 -0.3633 -1.0277 -0.0097 26 1 -0.3633 0.5054 0.8948 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5677 1.7046 -2.0028 30 1 0.8162 1.7315 -1.6868 31 1 1.4057 6.2193 -2.8371 32 1 3.8035 2.4628 0.2640 33 1 4.0126 0.7782 -0.2713 34 1 4.0406 -1.0270 1.2992 35 1 4.7052 -2.9479 7.5230 36 1 5.2570 -1.2945 7.8849 37 1 3.5223 -1.6885 7.9496 38 1 3.4318 2.2163 4.8420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599308304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:44 Heat of formation + Delta-G solvation = -21.380986 kcal Electronic energy + Delta-G solvation = -21296.096873 eV Core-core repulsion = 17946.699560 eV Total energy + Delta-G solvation = -3349.397313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49666 -40.23287 -37.35895 -36.72162 -34.52163 -32.76268 -32.28223 -30.43538 -28.80829 -27.71557 -25.94292 -24.76386 -23.41146 -22.41294 -21.55067 -19.92988 -18.62757 -17.78562 -16.97801 -16.85059 -16.70186 -16.19620 -15.48715 -15.09760 -14.59962 -14.49740 -13.96624 -13.81409 -13.60536 -13.38956 -12.96636 -12.46748 -12.37072 -12.14909 -11.79247 -11.68019 -11.43090 -11.41767 -11.13577 -11.08243 -11.06725 -10.91380 -10.54915 -10.24880 -9.94773 -9.51951 -9.26208 -9.16426 -8.58109 -7.56367 -6.05954 -4.03607 0.13702 0.95944 2.17585 2.28157 3.25629 3.33507 3.34051 3.56274 3.77830 4.01963 4.24239 4.39333 4.58380 4.65196 4.82555 4.90963 4.95799 5.00584 5.24503 5.25143 5.32818 5.39567 5.56221 5.80479 5.84293 5.94703 6.02793 6.11437 6.26881 6.33728 6.59527 6.71773 6.78463 6.96508 7.42414 7.53619 7.65270 7.73605 7.86806 8.61500 9.06449 9.54817 11.07156 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.003648 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.092221 B = 7673.282558 C = 8115.204899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 N -0.517 5.517 4 C 0.164 3.836 5 C -0.509 4.509 6 H 0.084 0.916 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.102 3.898 14 C 0.146 3.854 15 C 0.046 3.954 16 N -0.389 5.389 17 C 0.014 3.986 18 C 0.533 3.467 19 O -0.496 6.496 20 O -0.336 6.336 21 C 0.034 3.966 22 C 0.126 3.874 23 N -0.413 5.413 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.058 0.942 29 H -0.008 1.008 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.177 0.823 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -15.941 11.769 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 N -0.242 5.242 4 C 0.038 3.962 5 C -0.548 4.548 6 H 0.102 0.898 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.027 4.027 14 C 0.003 3.997 15 C -0.119 4.119 16 N -0.106 5.106 17 C -0.125 4.125 18 C 0.375 3.625 19 O -0.383 6.383 20 O -0.251 6.251 21 C -0.060 4.060 22 C -0.033 4.033 23 N -0.126 5.126 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.010 0.990 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.965 -15.273 12.377 20.276 hybrid contribution 0.121 -0.771 -1.311 1.526 sum 5.086 -16.045 11.066 20.143 Atomic orbital electron populations 1.21739 0.95050 1.00294 1.03087 1.22193 0.96658 0.90578 0.99353 1.61977 1.13893 1.14393 1.33896 1.20251 0.95713 0.96150 0.84067 1.21045 1.46745 0.87983 0.98982 0.89774 1.24891 0.95212 0.94706 0.98427 1.69894 1.49496 1.02840 1.31409 0.86926 0.79228 0.79439 0.84501 1.20184 1.21194 1.19332 1.21031 0.91460 1.04110 0.86053 1.23002 0.88515 0.90325 0.97830 1.23795 0.98351 0.95837 0.93896 1.68371 1.06879 1.35353 0.99947 1.20963 1.06915 0.92992 0.91587 1.20577 0.73077 0.80787 0.88025 1.90864 1.46675 1.53734 1.47040 1.86678 1.80279 1.28116 1.30015 1.23357 1.02512 1.01828 0.78321 1.23956 0.90437 0.93573 0.95349 1.68713 1.09354 1.35781 0.98801 0.92069 0.93241 0.92176 0.95265 0.92354 0.99033 0.95053 0.92653 0.86690 0.93112 0.80620 0.87800 0.91678 0.91664 0.80023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.98 37.16 0.37 -1.85 16 2 C 0.04 0.64 5.53 -3.83 -0.02 0.62 16 3 N -0.52 -10.00 4.37 -237.51 -1.04 -11.04 16 4 C 0.16 3.71 3.65 -4.98 -0.02 3.69 16 5 C -0.51 -13.94 9.17 -34.44 -0.32 -14.25 16 6 H 0.08 2.56 7.89 -52.49 -0.41 2.14 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.87 20.77 27.37 -169.99 -4.65 16.11 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.08 6.69 56.52 0.38 -5.70 16 13 C 0.10 1.74 5.13 -4.97 -0.03 1.71 16 14 C 0.15 2.24 5.71 -82.26 -0.47 1.77 16 15 C 0.05 0.60 9.17 -17.38 -0.16 0.44 16 16 N -0.39 -5.38 10.28 -9.63 -0.10 -5.47 16 17 C 0.01 0.19 6.75 -82.87 -0.56 -0.36 16 18 C 0.53 7.03 7.95 34.75 0.28 7.31 16 19 O -0.50 -7.06 16.13 -19.21 -0.31 -7.37 16 20 O -0.34 -3.94 10.40 -40.46 -0.42 -4.36 16 21 C 0.03 0.26 10.56 101.05 1.07 1.32 16 22 C 0.13 1.80 10.77 -16.99 -0.18 1.62 16 23 N -0.41 -6.86 10.41 -8.93 -0.09 -6.95 16 24 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 28 H 0.06 0.82 5.54 -51.92 -0.29 0.53 16 29 H -0.01 -0.18 7.40 -51.93 -0.38 -0.56 16 30 H 0.03 0.71 5.39 -51.93 -0.28 0.43 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 32 H 0.12 2.24 7.32 -51.93 -0.38 1.86 16 33 H 0.05 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.18 1.75 8.00 -52.48 -0.42 1.33 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.18 2.25 7.65 -52.49 -0.40 1.84 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -32.10 324.47 -6.10 -38.20 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.01 Total: -1.60 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.13 Total: 3.87 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.46 Total: -49.74 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.73 Total: -11.73 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.65 Total: 16.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.10 -6.10 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599308304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.815 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds