Wall clock time and date at job start Tue Mar 31 2020 00:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.46951 * 2 1 4 4 C 1.46898 * 111.00014 * 288.05852 * 3 2 1 5 5 C 1.50696 * 109.47443 * 160.35987 * 4 3 2 6 6 H 1.07998 * 119.99972 * 4.90404 * 5 4 3 7 7 C 1.37876 * 120.00346 * 184.89716 * 5 4 3 8 8 N 1.31512 * 119.99961 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99970 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47278 * 89.99507 * 9 7 5 11 11 H 1.48501 * 109.47315 * 209.99872 * 9 7 5 12 12 H 1.48502 * 109.46743 * 329.99692 * 9 7 5 13 13 C 1.46900 * 111.00223 * 164.10657 * 3 2 1 14 14 C 1.50704 * 109.46824 * 293.95406 * 13 3 2 15 15 C 1.38797 * 119.90380 * 94.72848 * 14 13 3 16 16 N 1.31755 * 120.12868 * 180.27629 * 15 14 13 17 17 C 1.33067 * 119.92050 * 359.97438 * 16 15 14 18 18 C 1.48047 * 120.09303 * 180.02562 * 17 16 15 19 19 O 1.21426 * 119.99944 * 179.97438 * 18 17 16 20 20 O 1.34687 * 120.00205 * 359.97276 * 18 17 16 21 21 C 1.45199 * 117.00000 * 179.97438 * 20 18 17 22 22 C 1.39428 * 119.80690 * 0.02562 * 17 16 15 23 23 N 1.32110 * 119.89787 * 274.99540 * 14 13 3 24 24 H 1.08993 * 109.46908 * 59.46333 * 1 2 3 25 25 H 1.09004 * 109.46881 * 179.46109 * 1 2 3 26 26 H 1.08998 * 109.47165 * 299.45743 * 1 2 3 27 27 H 1.08999 * 109.47516 * 239.99377 * 2 1 3 28 28 H 1.09010 * 109.46600 * 119.99447 * 2 1 3 29 29 H 1.09000 * 109.47499 * 280.36564 * 4 3 2 30 30 H 1.09006 * 109.46980 * 40.36591 * 4 3 2 31 31 H 0.97009 * 119.99994 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47346 * 173.95326 * 13 3 2 33 33 H 1.09000 * 109.47287 * 53.94930 * 13 3 2 34 34 H 1.08006 * 119.93320 * 0.26693 * 15 14 13 35 35 H 1.08998 * 109.47285 * 179.97438 * 21 20 18 36 36 H 1.08997 * 109.47520 * 300.01156 * 21 20 18 37 37 H 1.09007 * 109.46671 * 60.01087 * 21 20 18 38 38 H 1.08000 * 120.06644 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7943 2.0230 -1.3039 5 6 1.8457 3.5208 -1.1458 6 1 2.1056 3.9545 -0.1915 7 6 1.5610 4.3375 -2.2196 8 7 1.6064 5.6446 -2.0817 9 14 1.1108 3.5874 -3.8701 10 1 -0.3602 3.3970 -3.9426 11 1 1.5469 4.4949 -4.9617 12 1 1.7879 2.2741 -4.0180 13 6 3.4387 1.4417 0.3756 14 6 3.5966 1.0056 1.8094 15 6 3.9079 -0.3153 2.1007 16 7 4.0416 -0.7026 3.3529 17 6 3.8783 0.1747 4.3400 18 6 4.0283 -0.2562 5.7485 19 8 3.8794 0.5458 6.6479 20 8 4.3298 -1.5379 6.0322 21 6 4.4620 -1.8890 7.4348 22 6 3.5657 1.5008 4.0441 23 7 3.4331 1.8806 2.7857 24 1 -0.3633 0.5221 -0.8851 25 1 -0.3633 -1.0277 -0.0097 26 1 -0.3633 0.5054 0.8948 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5677 1.7046 -2.0028 30 1 0.8162 1.7315 -1.6868 31 1 1.4057 6.2193 -2.8371 32 1 3.8035 2.4628 0.2640 33 1 4.0126 0.7782 -0.2713 34 1 4.0406 -1.0270 1.2992 35 1 4.7052 -2.9479 7.5230 36 1 5.2570 -1.2945 7.8849 37 1 3.5223 -1.6885 7.9496 38 1 3.4318 2.2163 4.8420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599308304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:43 Heat of formation + Delta-G solvation = -45.190747 kcal Electronic energy + Delta-G solvation = -21297.129342 eV Core-core repulsion = 17946.699560 eV Total energy + Delta-G solvation = -3350.429781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59407 -41.23500 -38.77277 -37.68492 -35.67472 -34.72464 -33.54744 -31.81464 -30.20451 -28.75974 -27.28752 -25.85649 -24.60553 -24.08948 -22.61019 -21.40430 -19.66103 -18.97365 -18.80753 -17.92471 -17.64434 -17.43057 -16.94163 -16.11946 -16.03453 -15.83777 -15.41185 -15.13524 -14.66543 -14.50279 -14.33764 -14.11619 -13.52904 -13.35665 -13.05057 -12.95411 -12.82248 -12.63673 -12.54659 -12.38692 -12.18459 -12.11439 -11.87420 -11.86674 -11.59723 -11.45387 -10.72585 -10.53180 -10.30124 -9.01737 -8.22103 -6.25113 -0.97664 -0.12859 1.12371 1.36719 1.39222 1.40287 1.50662 2.38783 2.43966 2.78351 2.87909 3.09603 3.15140 3.31799 3.65279 3.78526 3.90732 4.17156 4.26811 4.30287 4.33737 4.37961 4.55785 4.64382 4.69679 4.71217 4.90982 4.95131 5.02982 5.06753 5.09174 5.17247 5.35614 5.62538 5.89379 6.00765 6.32046 6.42855 6.56566 6.67204 6.83201 7.37743 8.95087 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.003648 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.092221 B = 7673.282558 C = 8115.204899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 N -0.542 5.542 4 C 0.175 3.825 5 C -0.511 4.511 6 H 0.033 0.967 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.242 1.242 13 C 0.106 3.894 14 C 0.134 3.866 15 C 0.064 3.936 16 N -0.391 5.391 17 C 0.017 3.983 18 C 0.537 3.463 19 O -0.512 6.512 20 O -0.342 6.342 21 C 0.026 3.974 22 C 0.120 3.880 23 N -0.450 5.450 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.002 0.998 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -19.640 11.180 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 N -0.267 5.267 4 C 0.048 3.952 5 C -0.550 4.550 6 H 0.051 0.949 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.165 1.165 13 C -0.022 4.022 14 C -0.008 4.008 15 C -0.100 4.100 16 N -0.108 5.108 17 C -0.122 4.122 18 C 0.379 3.621 19 O -0.400 6.400 20 O -0.257 6.257 21 C -0.067 4.067 22 C -0.039 4.039 23 N -0.165 5.165 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.231 0.769 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.171 -19.019 11.823 22.984 hybrid contribution 0.104 0.365 -0.940 1.014 sum 5.275 -18.654 10.883 22.231 Atomic orbital electron populations 1.21755 0.95036 1.01947 1.01392 1.22293 0.96662 0.88460 1.01253 1.61763 1.15787 1.17106 1.32087 1.19966 0.96118 0.92970 0.86129 1.21295 1.45673 0.91106 0.96891 0.94887 1.25877 0.95237 0.94975 1.03128 1.70078 1.51555 1.04809 1.32887 0.85728 0.79306 0.79461 0.78492 1.19399 1.21240 1.16493 1.20917 0.90585 1.02796 0.87932 1.22859 0.89896 0.91395 0.96677 1.24212 0.96254 0.95080 0.94466 1.68482 1.07119 1.35093 1.00126 1.21092 1.06002 0.92799 0.92275 1.20434 0.72871 0.81290 0.87487 1.90856 1.47491 1.54297 1.47365 1.86657 1.79672 1.26865 1.32472 1.23722 1.02954 1.03788 0.76252 1.24063 0.90718 0.94314 0.94783 1.68604 1.10442 1.37420 1.00032 0.93686 0.89906 0.93928 0.93074 0.90416 0.98069 0.94530 0.92648 0.90664 0.89701 0.76857 0.84648 0.91259 0.91358 0.79108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.98 71.98 0.72 -3.36 16 2 C 0.04 1.16 5.53 86.30 0.48 1.63 16 3 N -0.54 -20.51 4.37 -905.35 -3.96 -24.47 16 4 C 0.17 7.76 3.65 85.56 0.31 8.07 16 5 C -0.51 -28.92 9.17 25.60 0.23 -28.69 16 6 H 0.03 2.14 7.89 -2.91 -0.02 2.12 16 7 C 0.00 0.26 5.47 84.65 0.46 0.72 16 8 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 9 Si 0.95 42.67 27.37 68.60 1.88 44.55 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.24 -9.77 6.69 99.48 0.67 -9.10 16 13 C 0.11 3.55 5.13 85.56 0.44 3.99 16 14 C 0.13 4.02 5.71 42.65 0.24 4.27 16 15 C 0.06 1.49 9.17 84.84 0.78 2.26 16 16 N -0.39 -9.91 10.28 -184.37 -1.90 -11.81 16 17 C 0.02 0.44 6.75 41.85 0.28 0.73 16 18 C 0.54 13.53 7.95 70.43 0.56 14.09 16 19 O -0.51 -14.21 16.13 20.08 0.32 -13.89 16 20 O -0.34 -7.34 10.40 -55.96 -0.58 -7.92 16 21 C 0.03 0.33 10.56 113.37 1.20 1.53 16 22 C 0.12 3.45 10.77 84.94 0.91 4.36 16 23 N -0.45 -15.28 10.41 -182.17 -1.90 -17.18 16 24 H 0.04 1.41 6.52 -2.39 -0.02 1.39 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.26 8.05 -2.39 -0.02 1.24 16 28 H 0.08 1.90 5.54 -2.38 -0.01 1.89 16 29 H 0.00 0.07 7.40 -2.39 -0.02 0.05 16 30 H 0.04 1.60 5.39 -2.38 -0.01 1.59 16 31 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 32 H 0.07 3.09 7.32 -2.38 -0.02 3.07 16 33 H 0.09 2.20 8.03 -2.39 -0.02 2.18 16 34 H 0.21 3.21 8.00 -2.91 -0.02 3.19 16 35 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.19 4.86 7.65 -2.91 -0.02 4.84 16 Total: -1.00 -72.70 324.47 1.82 -70.88 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.03 Total: 9.62 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.62 Total: 9.60 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -7.45 Total: -112.84 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.26 Total: -21.81 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -72.70 1.82 -70.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599308304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.689 kcal (2) G-P(sol) polarization free energy of solvation -72.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds