Wall clock time and date at job start Tue Mar 31 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 120.00372 * 2 1 4 4 H 1.07996 * 120.00430 * 204.03971 * 3 2 1 5 5 C 1.38954 * 119.99800 * 24.04828 * 3 2 1 6 6 N 1.31411 * 120.00255 * 12.75952 * 5 3 2 7 7 Si 1.86801 * 120.00009 * 192.76654 * 5 3 2 8 8 H 1.48499 * 109.47052 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47094 * 119.99375 * 7 5 3 10 10 H 1.48494 * 109.47123 * 239.99849 * 7 5 3 11 11 C 1.34779 * 119.99802 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00151 * 184.50324 * 11 2 1 13 13 C 1.50700 * 119.99881 * 4.51825 * 11 2 1 14 14 H 1.09000 * 112.85360 * 21.17138 * 13 11 2 15 15 C 1.53781 * 113.61427 * 152.37760 * 13 11 2 16 16 C 1.53776 * 87.08310 * 89.11277 * 15 13 11 17 17 C 1.53782 * 87.08306 * 25.43022 * 16 15 13 18 18 H 1.09001 * 113.61622 * 89.11863 * 17 16 15 19 19 C 1.50702 * 113.61387 * 220.02073 * 17 16 15 20 20 O 1.21276 * 119.99860 * 115.74178 * 19 17 16 21 21 N 1.34774 * 119.99898 * 295.73457 * 19 17 16 22 22 C 1.46503 * 120.00385 * 0.02562 * 21 19 17 23 23 C 1.46498 * 120.00135 * 180.02562 * 21 19 17 24 24 C 1.47202 * 109.47308 * 89.99827 * 23 21 19 25 25 N 6.67142 * 77.11759 * 109.34602 * 2 1 3 26 26 H 1.09003 * 109.47193 * 264.65865 * 1 2 3 27 27 H 1.08998 * 109.46876 * 24.64713 * 1 2 3 28 28 H 1.08993 * 109.47436 * 144.65441 * 1 2 3 29 29 H 0.96997 * 120.00340 * 180.02562 * 6 5 3 30 30 H 1.08998 * 113.61726 * 334.56155 * 15 13 11 31 31 H 1.09006 * 113.61184 * 203.65647 * 15 13 11 32 32 H 1.09001 * 113.61779 * 139.98172 * 16 15 13 33 33 H 1.09001 * 113.61709 * 270.87993 * 16 15 13 34 34 H 1.09001 * 109.46855 * 89.99450 * 22 21 19 35 35 H 1.09004 * 109.47298 * 209.99853 * 22 21 19 36 36 H 1.09004 * 109.47027 * 329.99875 * 22 21 19 37 37 H 1.08993 * 109.47735 * 210.00088 * 23 21 19 38 38 H 1.09006 * 109.47350 * 330.00554 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1603 1.2278 -0.3810 5 6 1.5463 2.3384 0.4904 6 7 0.4297 2.2526 1.1780 7 14 2.3210 4.0081 0.1721 8 1 3.5650 3.8337 -0.6200 9 1 1.3679 4.8601 -0.5835 10 1 2.6464 4.6578 1.4672 11 6 2.1388 -1.1672 0.0005 12 8 3.3489 -1.1689 0.0830 13 6 1.3888 -2.4703 -0.1017 14 1 0.3930 -2.3532 -0.5292 15 6 2.2062 -3.6028 -0.7453 16 6 2.7058 -3.9399 0.6694 17 6 1.4113 -3.2972 1.1947 18 1 0.5800 -3.9971 1.2806 19 6 1.6101 -2.4673 2.4368 20 8 1.4061 -1.2722 2.4066 21 7 2.0145 -3.0532 3.5811 22 6 2.2614 -4.4969 3.6175 23 6 2.2074 -2.2466 4.7887 24 6 0.9484 -2.1937 5.5497 25 7 -0.0224 -2.1544 6.1363 26 1 -0.3634 -0.0957 1.0232 27 1 -0.3633 0.9340 -0.4286 28 1 -0.3634 -0.8382 -0.5945 29 1 0.0077 3.0562 1.5200 30 1 2.9918 -3.2492 -1.4131 31 1 1.5923 -4.3862 -1.1897 32 1 2.7728 -5.0100 0.8654 33 1 3.6085 -3.3992 0.9541 34 1 3.3027 -4.6939 3.3625 35 1 2.0544 -4.8758 4.6184 36 1 1.6107 -4.9950 2.8987 37 1 2.9859 -2.6957 5.4053 38 1 2.5044 -1.2363 4.5073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024471.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:02 Heat of formation + Delta-G solvation = -14.916428 kcal Electronic energy + Delta-G solvation = -22959.214022 eV Core-core repulsion = 19610.097034 eV Total energy + Delta-G solvation = -3349.116988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94422 -39.96247 -38.13607 -37.64301 -36.30163 -36.20370 -33.49019 -30.51225 -28.62798 -27.87138 -27.29035 -26.35619 -25.69163 -22.25180 -21.16570 -19.35597 -18.91265 -18.68839 -18.41487 -17.46227 -17.18341 -16.48270 -16.32591 -15.81831 -15.38337 -15.22739 -15.15945 -14.84453 -14.23229 -13.90058 -13.76801 -13.57970 -13.49427 -13.48633 -13.19197 -13.14117 -12.99014 -12.72890 -12.65395 -12.46287 -12.32821 -12.11573 -12.08636 -11.62882 -11.10638 -10.89529 -10.55496 -10.02943 -9.81790 -9.46003 -8.21231 -5.83938 1.32027 1.35496 1.37550 1.52447 1.69218 1.75466 2.16698 2.31575 2.41354 3.05069 3.13610 3.25849 3.59662 3.67102 3.88133 4.05569 4.10963 4.32608 4.34631 4.44764 4.54592 4.64983 4.78914 4.87380 4.88476 4.97843 5.09546 5.11928 5.19770 5.21703 5.47017 5.49222 5.53276 5.64239 6.22053 6.36391 6.44649 6.63548 7.31197 7.33187 7.70368 8.26196 8.81039 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.007150 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.884677 B = 3915.385125 C = 5035.632988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.447 5.447 3 C -0.329 4.329 4 H 0.066 0.934 5 C -0.010 4.010 6 N -0.896 5.896 7 Si 0.984 3.016 8 H -0.270 1.270 9 H -0.267 1.267 10 H -0.281 1.281 11 C 0.477 3.523 12 O -0.636 6.636 13 C -0.130 4.130 14 H 0.098 0.902 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.106 4.106 18 H 0.160 0.840 19 C 0.497 3.503 20 O -0.541 6.541 21 N -0.616 5.616 22 C 0.071 3.929 23 C 0.210 3.790 24 C 0.219 3.781 25 N -0.480 5.480 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.264 0.736 30 H 0.052 0.948 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.177 0.823 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -17.818 2.224 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.164 5.164 3 C -0.458 4.458 4 H 0.084 0.916 5 C -0.210 4.210 6 N -0.535 5.535 7 Si 0.808 3.192 8 H -0.195 1.195 9 H -0.192 1.192 10 H -0.207 1.207 11 C 0.267 3.733 12 O -0.525 6.525 13 C -0.152 4.152 14 H 0.116 0.884 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.127 4.127 18 H 0.177 0.823 19 C 0.286 3.714 20 O -0.415 6.415 21 N -0.351 5.351 22 C -0.070 4.070 23 C 0.084 3.916 24 C -0.100 4.100 25 N -0.159 5.159 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.194 0.806 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.936 -16.957 3.187 17.280 hybrid contribution 0.358 1.671 -0.031 1.709 sum 1.294 -15.287 3.157 15.663 Atomic orbital electron populations 1.21206 0.80657 0.99470 0.99393 1.43459 1.05887 1.04585 1.62480 1.19519 0.99782 0.86216 1.40266 0.91587 1.26073 0.97269 1.02878 0.94819 1.70182 1.19913 1.29581 1.33795 0.85022 0.78433 0.77818 0.77904 1.19477 1.19152 1.20744 1.20090 0.87314 0.85386 0.80466 1.90410 1.16234 1.87793 1.58022 1.22442 1.00911 0.92830 0.98988 0.88387 1.22784 0.98922 0.96090 0.97108 1.22803 0.94390 1.02004 0.94740 1.22829 1.03373 0.97876 0.88651 0.82305 1.21447 0.75893 0.88456 0.85651 1.91003 1.49384 1.16886 1.84270 1.47868 1.68775 1.10739 1.07758 1.22250 1.03423 0.76422 1.04927 1.19094 0.87295 1.00304 0.84947 1.30385 0.95389 0.91548 0.92672 1.81106 1.12433 1.10304 1.12098 0.95242 0.93301 0.92328 0.92642 0.92886 0.85285 0.85949 0.92040 0.90131 0.89029 0.89103 0.80552 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.84 8.15 127.77 1.04 7.88 16 2 N -0.45 -24.96 2.44 -658.90 -1.61 -26.57 16 3 C -0.33 -20.19 9.22 84.04 0.78 -19.42 16 4 H 0.07 4.28 7.49 -2.91 -0.02 4.26 16 5 C -0.01 -0.56 5.04 84.93 0.43 -0.14 16 6 N -0.90 -53.07 10.82 21.66 0.23 -52.83 16 7 Si 0.98 46.13 29.57 68.60 2.03 48.16 16 8 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 C 0.48 24.06 4.50 87.66 0.39 24.46 16 12 O -0.64 -36.26 14.96 -3.06 -0.05 -36.30 16 13 C -0.13 -4.52 3.60 -11.01 -0.04 -4.56 16 14 H 0.10 3.14 5.94 -2.39 -0.01 3.13 16 15 C -0.11 -2.84 7.44 31.12 0.23 -2.61 16 16 C -0.10 -2.33 5.92 31.12 0.18 -2.15 16 17 C -0.11 -2.82 2.84 -11.01 -0.03 -2.85 16 18 H 0.16 2.78 7.83 -2.39 -0.02 2.76 16 19 C 0.50 17.06 6.81 87.66 0.60 17.65 16 20 O -0.54 -26.26 12.58 -3.02 -0.04 -26.30 16 21 N -0.62 -14.66 2.83 -857.38 -2.43 -17.09 16 22 C 0.07 0.83 9.36 127.77 1.20 2.02 16 23 C 0.21 4.76 5.88 84.57 0.50 5.26 16 24 C 0.22 6.28 15.76 89.45 1.41 7.69 16 25 N -0.48 -16.55 18.53 19.99 0.37 -16.18 16 26 H 0.03 1.60 7.25 -2.39 -0.02 1.58 16 27 H 0.05 2.58 6.70 -2.39 -0.02 2.57 16 28 H 0.06 2.38 5.94 -2.39 -0.01 2.36 16 29 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.05 1.64 7.93 -2.39 -0.02 1.62 16 31 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.12 1.47 7.98 -2.39 -0.02 1.45 16 33 H 0.06 1.92 7.17 -2.39 -0.02 1.90 16 34 H 0.08 0.72 8.12 -2.39 -0.02 0.71 16 35 H 0.09 0.68 8.07 -2.38 -0.02 0.67 16 36 H 0.09 0.80 6.42 -2.38 -0.02 0.79 16 37 H 0.18 1.92 8.07 -2.39 -0.02 1.90 16 38 H 0.10 3.01 7.42 -2.38 -0.02 2.99 16 Total: -1.00 -90.57 316.35 6.28 -84.29 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.08 Total: 9.60 kcal Atomic # 6 Polarization: 26.55 SS G_CDS: 6.68 Total: 33.23 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -3.43 Total: -112.68 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -0.08 Total: -62.60 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -90.57 6.28 -84.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024471.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.372 kcal (2) G-P(sol) polarization free energy of solvation -90.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds