Wall clock time and date at job start Tue Mar 31 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 119.99847 * 2 1 4 4 H 1.07996 * 120.00389 * 202.40106 * 3 2 1 5 5 C 1.38956 * 120.00000 * 22.40581 * 3 2 1 6 6 N 1.31412 * 120.00009 * 11.55996 * 5 3 2 7 7 Si 1.86796 * 120.00190 * 191.55442 * 5 3 2 8 8 H 1.48502 * 109.46914 * 90.00078 * 7 5 3 9 9 H 1.48491 * 109.47460 * 209.99955 * 7 5 3 10 10 H 1.48507 * 109.47004 * 330.00359 * 7 5 3 11 11 C 1.34771 * 120.00135 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99932 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00261 * 0.02562 * 11 2 1 14 14 H 1.09005 * 112.84451 * 311.19497 * 13 11 2 15 15 C 1.53953 * 113.74823 * 82.39684 * 13 11 2 16 16 C 1.53782 * 87.02062 * 139.94494 * 15 13 11 17 17 C 1.53783 * 87.17408 * 334.64178 * 16 15 13 18 18 H 1.08997 * 113.61219 * 270.75789 * 17 16 15 19 19 C 1.50703 * 113.61410 * 139.93424 * 17 16 15 20 20 O 1.21276 * 120.00313 * 259.50622 * 19 17 16 21 21 N 1.34777 * 119.99518 * 79.50647 * 19 17 16 22 22 C 1.46498 * 120.00534 * 359.97438 * 21 19 17 23 23 C 1.46508 * 119.99718 * 179.97438 * 21 19 17 24 24 C 1.47195 * 109.47209 * 89.99688 * 23 21 19 25 25 N 8.48009 * 88.11629 * 159.84557 * 2 1 3 26 26 H 1.09002 * 109.46957 * 272.21671 * 1 2 3 27 27 H 1.08997 * 109.47342 * 32.21621 * 1 2 3 28 28 H 1.09006 * 109.47009 * 152.21792 * 1 2 3 29 29 H 0.96991 * 120.00484 * 180.02562 * 6 5 3 30 30 H 1.09001 * 113.60783 * 25.42732 * 15 13 11 31 31 H 1.08995 * 113.66705 * 254.47607 * 15 13 11 32 32 H 1.08996 * 113.61475 * 220.04993 * 16 15 13 33 33 H 1.09003 * 113.61002 * 89.23402 * 16 15 13 34 34 H 1.08997 * 109.46670 * 89.99813 * 22 21 19 35 35 H 1.08993 * 109.47087 * 209.99983 * 22 21 19 36 36 H 1.08999 * 109.46646 * 330.00433 * 22 21 19 37 37 H 1.08996 * 109.47074 * 210.00098 * 23 21 19 38 38 H 1.09000 * 109.46595 * 329.99967 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2227 -0.3564 5 6 1.5343 2.3453 0.4587 6 7 0.3891 2.2708 1.0989 7 14 2.3339 4.0078 0.1654 8 1 1.8593 4.5642 -1.1270 9 1 1.9686 4.9340 1.2670 10 1 3.8096 3.8467 0.1229 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.6006 -2.5085 0.7539 15 6 0.9146 -2.9151 -1.3989 16 6 1.3036 -4.3452 -0.9888 17 6 2.2978 -3.7103 -0.0021 18 1 3.2829 -3.5281 -0.4315 19 6 2.3605 -4.4144 1.3288 20 8 1.7684 -3.9592 2.2842 21 7 3.0746 -5.5502 1.4572 22 6 3.7895 -6.1006 0.3029 23 6 3.1361 -6.2345 2.7512 24 6 2.0353 -7.2072 2.8446 25 7 1.1862 -7.9565 2.9202 26 1 -0.3633 0.0398 1.0269 27 1 -0.3634 0.8694 -0.5478 28 1 -0.3633 -0.9093 -0.4790 29 1 -0.0412 3.0790 1.4188 30 1 1.5205 -2.5138 -2.2113 31 1 -0.1550 -2.7834 -1.5623 32 1 1.7825 -4.9132 -1.7863 33 1 0.4972 -4.8947 -0.5031 34 1 4.7971 -5.6864 0.2684 35 1 3.8454 -7.1853 0.3936 36 1 3.2578 -5.8393 -0.6120 37 1 4.0895 -6.7549 2.8420 38 1 3.0436 -5.5028 3.5537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:07 Heat of formation + Delta-G solvation = -2.883348 kcal Electronic energy + Delta-G solvation = -22007.575298 eV Core-core repulsion = 18658.980103 eV Total energy + Delta-G solvation = -3348.595195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65407 -38.76673 -37.02300 -36.42059 -35.39704 -34.52050 -31.53055 -29.73447 -27.17852 -26.92168 -25.82102 -25.46490 -23.94226 -20.80865 -19.77047 -18.42770 -18.00313 -17.42738 -16.79536 -16.44736 -15.93176 -14.97293 -14.84755 -14.74824 -14.21067 -13.96317 -13.81514 -13.35681 -13.12676 -13.03454 -12.76231 -12.65899 -12.47546 -12.19037 -11.85070 -11.68614 -11.52549 -11.38169 -11.18639 -11.03770 -10.81892 -10.54524 -10.33097 -10.26611 -10.18042 -9.58320 -9.08504 -8.97100 -8.28623 -7.61648 -6.24834 -3.81791 2.16599 2.58572 2.63095 3.19260 3.20502 3.27947 3.33370 3.83733 3.89218 4.17750 4.49814 4.64831 4.70504 4.85193 4.88671 4.97678 5.09719 5.20837 5.28602 5.32936 5.37979 5.51194 5.70463 5.91237 5.94700 6.04334 6.09237 6.16869 6.28043 6.45607 6.67306 6.95981 7.13120 7.32020 7.32980 7.61742 8.14293 8.19538 8.54719 9.24472 9.50157 10.05620 10.78641 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.004140 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.318199 B = 6762.059420 C = 6843.519237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.443 5.443 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.458 3.542 12 O -0.594 6.594 13 C -0.100 4.100 14 H 0.111 0.889 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.111 4.111 18 H 0.129 0.871 19 C 0.532 3.468 20 O -0.521 6.521 21 N -0.620 5.620 22 C 0.076 3.924 23 C 0.208 3.792 24 C 0.193 3.807 25 N -0.426 5.426 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.267 0.733 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -15.032 -3.455 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.160 5.160 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.246 3.754 12 O -0.479 6.479 13 C -0.122 4.122 14 H 0.129 0.871 15 C -0.161 4.161 16 C -0.162 4.162 17 C -0.132 4.132 18 H 0.147 0.853 19 C 0.321 3.679 20 O -0.394 6.394 21 N -0.356 5.356 22 C -0.067 4.067 23 C 0.082 3.918 24 C -0.127 4.127 25 N -0.104 5.104 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.539 -15.695 -2.737 16.133 hybrid contribution 0.497 1.153 0.029 1.256 sum 3.036 -14.541 -2.707 15.100 Atomic orbital electron populations 1.21506 0.81148 0.98671 1.01744 1.43522 1.05538 1.04701 1.62272 1.19667 0.99429 0.83919 1.40430 0.88401 1.25339 0.96532 1.00017 0.95448 1.70011 1.17370 1.29165 1.35649 0.85930 0.79633 0.81369 0.77785 1.20443 1.20986 1.19401 1.19709 0.87735 0.84494 0.83459 1.90474 1.13942 1.87060 1.56453 1.22516 0.98306 0.92712 0.98654 0.87113 1.22832 1.01797 0.94794 0.96726 1.22861 0.98217 0.97277 0.97893 1.22680 1.01860 0.96275 0.92407 0.85280 1.20887 0.76831 0.79143 0.91030 1.90723 1.43540 1.64662 1.40510 1.47849 1.52093 1.25450 1.10224 1.21943 0.97353 0.99057 0.88351 1.18839 0.92152 0.91717 0.89093 1.29911 0.95002 0.94005 0.93770 1.81128 1.10379 1.11614 1.07305 0.92480 0.91435 0.95368 0.92319 0.89355 0.90522 0.90501 0.89975 0.91521 0.91090 0.90146 0.85820 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 8.39 59.85 0.50 3.10 16 2 N -0.44 -11.55 3.02 -122.19 -0.37 -11.92 16 3 C -0.31 -8.67 9.29 -14.93 -0.14 -8.81 16 4 H 0.10 2.87 7.40 -52.49 -0.39 2.48 16 5 C 0.03 0.80 5.11 -17.47 -0.09 0.71 16 6 N -0.88 -24.09 10.61 55.50 0.59 -23.50 16 7 Si 0.93 21.01 29.57 -169.99 -5.03 15.98 16 8 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 C 0.46 11.19 7.16 -10.99 -0.08 11.11 16 12 O -0.59 -16.17 15.59 5.55 0.09 -16.08 16 13 C -0.10 -1.86 2.07 -90.87 -0.19 -2.04 16 14 H 0.11 2.17 7.15 -51.93 -0.37 1.80 16 15 C -0.12 -1.76 6.95 -25.83 -0.18 -1.94 16 16 C -0.12 -1.46 6.77 -25.92 -0.18 -1.64 16 17 C -0.11 -1.67 2.15 -90.96 -0.20 -1.87 16 18 H 0.13 1.99 7.27 -51.93 -0.38 1.61 16 19 C 0.53 8.12 7.19 -10.98 -0.08 8.04 16 20 O -0.52 -10.06 15.50 5.56 0.09 -9.98 16 21 N -0.62 -6.59 2.83 -184.94 -0.52 -7.12 16 22 C 0.08 0.52 10.16 59.85 0.61 1.13 16 23 C 0.21 1.76 5.88 -6.83 -0.04 1.72 16 24 C 0.19 2.18 15.76 -20.80 -0.33 1.85 16 25 N -0.43 -6.01 18.53 42.11 0.78 -5.22 16 26 H 0.06 1.40 7.54 -51.93 -0.39 1.00 16 27 H 0.07 1.61 7.06 -51.93 -0.37 1.25 16 28 H 0.03 0.53 5.70 -51.93 -0.30 0.24 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 32 H 0.08 0.69 7.54 -51.93 -0.39 0.29 16 33 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 36 H 0.08 0.55 5.55 -51.93 -0.29 0.26 16 37 H 0.12 0.49 8.07 -51.93 -0.42 0.07 16 38 H 0.13 1.18 7.42 -51.93 -0.39 0.79 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -36.02 322.97 -4.78 -40.81 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.89 Total: 0.79 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -0.38 Total: 11.37 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.48 Total: -47.75 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.17 Total: -26.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.02 -4.78 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.925 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds