Wall clock time and date at job start Tue Mar 31 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 119.99847 * 2 1 4 4 H 1.07996 * 120.00389 * 202.40106 * 3 2 1 5 5 C 1.38956 * 120.00000 * 22.40581 * 3 2 1 6 6 N 1.31412 * 120.00009 * 11.55996 * 5 3 2 7 7 Si 1.86796 * 120.00190 * 191.55442 * 5 3 2 8 8 H 1.48502 * 109.46914 * 90.00078 * 7 5 3 9 9 H 1.48491 * 109.47460 * 209.99955 * 7 5 3 10 10 H 1.48507 * 109.47004 * 330.00359 * 7 5 3 11 11 C 1.34771 * 120.00135 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99932 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00261 * 0.02562 * 11 2 1 14 14 H 1.09005 * 112.84451 * 311.19497 * 13 11 2 15 15 C 1.53953 * 113.74823 * 82.39684 * 13 11 2 16 16 C 1.53782 * 87.02062 * 139.94494 * 15 13 11 17 17 C 1.53783 * 87.17408 * 334.64178 * 16 15 13 18 18 H 1.08997 * 113.61219 * 270.75789 * 17 16 15 19 19 C 1.50703 * 113.61410 * 139.93424 * 17 16 15 20 20 O 1.21276 * 120.00313 * 259.50622 * 19 17 16 21 21 N 1.34777 * 119.99518 * 79.50647 * 19 17 16 22 22 C 1.46498 * 120.00534 * 359.97438 * 21 19 17 23 23 C 1.46508 * 119.99718 * 179.97438 * 21 19 17 24 24 C 1.47195 * 109.47209 * 89.99688 * 23 21 19 25 25 N 8.48009 * 88.11629 * 159.84557 * 2 1 3 26 26 H 1.09002 * 109.46957 * 272.21671 * 1 2 3 27 27 H 1.08997 * 109.47342 * 32.21621 * 1 2 3 28 28 H 1.09006 * 109.47009 * 152.21792 * 1 2 3 29 29 H 0.96991 * 120.00484 * 180.02562 * 6 5 3 30 30 H 1.09001 * 113.60783 * 25.42732 * 15 13 11 31 31 H 1.08995 * 113.66705 * 254.47607 * 15 13 11 32 32 H 1.08996 * 113.61475 * 220.04993 * 16 15 13 33 33 H 1.09003 * 113.61002 * 89.23402 * 16 15 13 34 34 H 1.08997 * 109.46670 * 89.99813 * 22 21 19 35 35 H 1.08993 * 109.47087 * 209.99983 * 22 21 19 36 36 H 1.08999 * 109.46646 * 330.00433 * 22 21 19 37 37 H 1.08996 * 109.47074 * 210.00098 * 23 21 19 38 38 H 1.09000 * 109.46595 * 329.99967 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2227 -0.3564 5 6 1.5343 2.3453 0.4587 6 7 0.3891 2.2708 1.0989 7 14 2.3339 4.0078 0.1654 8 1 1.8593 4.5642 -1.1270 9 1 1.9686 4.9340 1.2670 10 1 3.8096 3.8467 0.1229 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.6006 -2.5085 0.7539 15 6 0.9146 -2.9151 -1.3989 16 6 1.3036 -4.3452 -0.9888 17 6 2.2978 -3.7103 -0.0021 18 1 3.2829 -3.5281 -0.4315 19 6 2.3605 -4.4144 1.3288 20 8 1.7684 -3.9592 2.2842 21 7 3.0746 -5.5502 1.4572 22 6 3.7895 -6.1006 0.3029 23 6 3.1361 -6.2345 2.7512 24 6 2.0353 -7.2072 2.8446 25 7 1.1862 -7.9565 2.9202 26 1 -0.3633 0.0398 1.0269 27 1 -0.3634 0.8694 -0.5478 28 1 -0.3633 -0.9093 -0.4790 29 1 -0.0412 3.0790 1.4188 30 1 1.5205 -2.5138 -2.2113 31 1 -0.1550 -2.7834 -1.5623 32 1 1.7825 -4.9132 -1.7863 33 1 0.4972 -4.8947 -0.5031 34 1 4.7971 -5.6864 0.2684 35 1 3.8454 -7.1853 0.3936 36 1 3.2578 -5.8393 -0.6120 37 1 4.0895 -6.7549 2.8420 38 1 3.0436 -5.5028 3.5537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:06 Heat of formation + Delta-G solvation = -27.978423 kcal Electronic energy + Delta-G solvation = -22008.663502 eV Core-core repulsion = 18658.980103 eV Total energy + Delta-G solvation = -3349.683399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88380 -40.27345 -38.30658 -37.64262 -36.53531 -36.37072 -33.58781 -30.57296 -28.76556 -27.96556 -27.53556 -26.43944 -25.77870 -21.99886 -21.16064 -19.80401 -18.97125 -18.86001 -18.54273 -17.62046 -17.34387 -16.72443 -16.09838 -15.96419 -15.78653 -15.45168 -15.04560 -14.86262 -14.13628 -13.98269 -13.92364 -13.70378 -13.60134 -13.46811 -13.30111 -13.06263 -12.98732 -12.86983 -12.63215 -12.54278 -12.40357 -12.22820 -12.10482 -11.88604 -11.42940 -11.00075 -10.75202 -10.21338 -9.95966 -9.67257 -8.30335 -5.96738 1.28420 1.38301 1.40729 1.49649 1.53912 1.72990 2.03935 2.28097 2.34345 3.03240 3.08710 3.13371 3.40465 3.60277 3.68105 3.85657 4.02942 4.32373 4.34581 4.40295 4.54341 4.61777 4.71628 4.74761 4.82520 4.88312 5.01761 5.02108 5.09117 5.10415 5.36564 5.38762 5.45705 5.48303 6.11105 6.19147 6.46576 6.50461 7.06313 7.18340 7.51377 8.06649 8.71581 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.004140 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.318199 B = 6762.059420 C = 6843.519237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.463 5.463 3 C -0.345 4.345 4 H 0.075 0.925 5 C -0.007 4.007 6 N -0.902 5.902 7 Si 0.992 3.008 8 H -0.263 1.263 9 H -0.276 1.276 10 H -0.274 1.274 11 C 0.451 3.549 12 O -0.630 6.630 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.116 4.116 16 C -0.097 4.097 17 C -0.110 4.110 18 H 0.127 0.873 19 C 0.525 3.475 20 O -0.575 6.575 21 N -0.611 5.611 22 C 0.066 3.934 23 C 0.206 3.794 24 C 0.218 3.782 25 N -0.479 5.479 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.272 0.728 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.180 0.820 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 -16.545 -4.745 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.181 5.181 3 C -0.473 4.473 4 H 0.093 0.907 5 C -0.208 4.208 6 N -0.541 5.541 7 Si 0.815 3.185 8 H -0.188 1.188 9 H -0.201 1.201 10 H -0.199 1.199 11 C 0.241 3.759 12 O -0.518 6.518 13 C -0.135 4.135 14 H 0.115 0.885 15 C -0.154 4.154 16 C -0.134 4.134 17 C -0.132 4.132 18 H 0.145 0.855 19 C 0.315 3.685 20 O -0.453 6.453 21 N -0.344 5.344 22 C -0.075 4.075 23 C 0.080 3.920 24 C -0.101 4.101 25 N -0.157 5.157 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.197 0.803 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.165 -17.260 -4.053 18.010 hybrid contribution 0.378 1.591 0.467 1.701 sum 3.543 -15.669 -3.586 16.460 Atomic orbital electron populations 1.21376 0.79696 0.99997 1.00554 1.43812 1.06606 1.04835 1.62874 1.19686 0.99258 0.85868 1.42464 0.90727 1.26152 0.97019 1.03077 0.94545 1.70109 1.18143 1.30301 1.35544 0.84954 0.78291 0.76818 0.78398 1.18814 1.20103 1.19853 1.20776 0.87761 0.85993 0.81409 1.90423 1.15795 1.88000 1.57615 1.22569 0.98801 0.90681 1.01440 0.88475 1.22860 1.02767 0.96152 0.93607 1.22786 0.97158 0.96011 0.97495 1.22688 1.01912 0.94981 0.93585 0.85527 1.20973 0.76915 0.80302 0.90338 1.90702 1.46199 1.66555 1.41874 1.47869 1.50449 1.23981 1.12102 1.22283 0.97471 1.00848 0.86932 1.19298 0.93567 0.91250 0.87840 1.30333 0.94400 0.93185 0.92226 1.81154 1.11947 1.13705 1.08935 0.94665 0.92789 0.91385 0.91855 0.89462 0.88831 0.86407 0.89333 0.90241 0.88086 0.89752 0.80275 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.97 8.39 127.77 1.07 7.04 16 2 N -0.46 -24.97 3.02 -658.90 -1.99 -26.96 16 3 C -0.34 -20.22 9.29 84.04 0.78 -19.44 16 4 H 0.07 4.60 7.40 -2.91 -0.02 4.58 16 5 C -0.01 -0.38 5.11 84.93 0.43 0.06 16 6 N -0.90 -50.07 10.61 21.67 0.23 -49.84 16 7 Si 0.99 43.52 29.57 68.60 2.03 45.55 16 8 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 9 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 C 0.45 22.64 7.16 87.66 0.63 23.27 16 12 O -0.63 -35.53 15.59 -3.07 -0.05 -35.58 16 13 C -0.11 -4.19 2.07 -10.95 -0.02 -4.21 16 14 H 0.10 3.88 7.15 -2.38 -0.02 3.87 16 15 C -0.12 -3.05 6.95 31.18 0.22 -2.84 16 16 C -0.10 -1.95 6.77 31.12 0.21 -1.74 16 17 C -0.11 -3.18 2.15 -11.01 -0.02 -3.21 16 18 H 0.13 3.74 7.27 -2.39 -0.02 3.72 16 19 C 0.53 15.55 7.19 87.66 0.63 16.18 16 20 O -0.57 -22.60 15.50 -3.02 -0.05 -22.65 16 21 N -0.61 -11.43 2.83 -857.41 -2.43 -13.86 16 22 C 0.07 0.65 10.16 127.77 1.30 1.95 16 23 C 0.21 2.95 5.88 84.57 0.50 3.45 16 24 C 0.22 4.52 15.76 89.45 1.41 5.93 16 25 N -0.48 -13.02 18.53 19.99 0.37 -12.65 16 26 H 0.03 1.77 7.54 -2.39 -0.02 1.76 16 27 H 0.05 2.63 7.06 -2.39 -0.02 2.61 16 28 H 0.07 2.57 5.70 -2.38 -0.01 2.55 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 31 H 0.09 2.15 7.69 -2.39 -0.02 2.13 16 32 H 0.12 1.48 7.54 -2.39 -0.02 1.47 16 33 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.46 8.07 -2.39 -0.02 0.44 16 36 H 0.08 0.80 5.55 -2.39 -0.01 0.79 16 37 H 0.18 0.60 8.07 -2.39 -0.02 0.58 16 38 H 0.12 2.06 7.42 -2.39 -0.02 2.05 16 Total: -1.00 -83.80 322.97 6.33 -77.47 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.08 Total: 12.09 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 7.13 Total: 26.43 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -3.82 Total: -103.30 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: -0.09 Total: -58.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -83.80 6.33 -77.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.488 kcal (2) G-P(sol) polarization free energy of solvation -83.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds